Wall clock time and date at job start Tue Mar 31 2020 00:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38725 * 118.91515 * 2 1 4 4 C 1.36789 * 120.43513 * 180.02562 * 3 2 1 5 5 C 1.41195 * 118.37474 * 359.97438 * 4 3 2 6 6 C 1.40760 * 120.98051 * 180.02562 * 5 4 3 7 7 H 1.07994 * 119.99861 * 136.22136 * 6 5 4 8 8 C 1.39960 * 119.99968 * 316.22012 * 6 5 4 9 9 N 1.30848 * 120.00300 * 172.31902 * 8 6 5 10 10 Si 1.86804 * 120.00270 * 352.32281 * 8 6 5 11 11 H 1.48503 * 109.47298 * 89.29586 * 10 8 6 12 12 H 1.48496 * 109.47315 * 209.30039 * 10 8 6 13 13 H 1.48499 * 109.46591 * 329.29888 * 10 8 6 14 14 C 1.46523 * 118.04261 * 0.02562 * 5 4 3 15 15 C 1.47260 * 120.33420 * 180.02562 * 14 5 4 16 16 C 1.36414 * 126.79903 * 352.80461 * 15 14 5 17 17 N 1.35997 * 109.67401 * 180.02562 * 16 15 14 18 18 H 0.96998 * 124.75704 * 179.74018 * 17 16 15 19 19 C 1.37694 * 110.48047 * 0.02562 * 17 16 15 20 20 N 1.32664 * 132.92198 * 179.97438 * 19 17 16 21 21 C 1.31621 * 121.69955 * 180.02562 * 20 19 17 22 22 C 1.38582 * 121.54478 * 359.97438 * 21 20 19 23 23 C 1.38339 * 119.33696 * 359.97438 * 22 21 20 24 24 C 1.39393 * 118.05768 * 0.03012 * 23 22 21 25 25 N 1.31609 * 118.90657 * 180.27288 * 2 1 3 26 26 H 1.08998 * 109.46675 * 90.00225 * 1 2 3 27 27 H 1.08996 * 109.47333 * 210.00246 * 1 2 3 28 28 H 1.09000 * 109.46761 * 330.00495 * 1 2 3 29 29 H 1.07996 * 119.78491 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.80904 * 179.97438 * 4 3 2 31 31 H 0.96993 * 120.00600 * 179.97438 * 9 8 6 32 32 H 1.07999 * 125.15936 * 359.97124 * 16 15 14 33 33 H 1.07995 * 119.22871 * 179.97438 * 21 20 19 34 34 H 1.08007 * 120.33235 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.97336 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1778 1.2143 0.0000 4 6 3.5452 1.2506 -0.0005 5 6 4.2489 0.0265 -0.0005 6 6 5.6563 -0.0002 -0.0005 7 1 6.1833 -0.6855 0.6466 8 6 6.3725 0.8616 -0.8391 9 7 7.6740 0.9454 -0.7333 10 14 5.4705 1.8921 -2.1095 11 1 5.0740 3.1888 -1.5040 12 1 6.3631 2.1401 -3.2701 13 1 4.2572 1.1666 -2.5643 14 6 3.4711 -1.2152 -0.0005 15 6 4.1534 -2.5202 0.0001 16 6 5.4925 -2.7422 -0.1362 17 7 5.7425 -4.0781 -0.0862 18 1 6.6221 -4.4793 -0.1644 19 6 4.5712 -4.7814 0.0848 20 7 4.3019 -6.0762 0.1896 21 6 3.0719 -6.5159 0.3513 22 6 1.9945 -5.6470 0.4208 23 6 2.2146 -4.2851 0.3187 24 6 3.5257 -3.8437 0.1477 25 7 2.1432 -1.1521 -0.0055 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6167 2.1371 0.0004 30 1 4.0736 2.1926 -0.0009 31 1 8.1705 1.5423 -1.3148 32 1 6.2403 -1.9738 -0.2651 33 1 2.8981 -7.5788 0.4317 34 1 0.9932 -6.0293 0.5543 35 1 1.3945 -3.5842 0.3697 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242862156.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:37 Heat of formation + Delta-G solvation = 94.181602 kcal Electronic energy + Delta-G solvation = -20742.111318 eV Core-core repulsion = 17705.034095 eV Total energy + Delta-G solvation = -3037.077223 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92266 -38.59961 -37.24407 -34.26011 -32.83472 -31.81511 -31.22455 -29.35372 -28.78882 -27.63244 -24.34566 -23.20317 -22.42212 -21.89406 -20.90330 -19.00869 -17.92051 -17.55766 -16.20023 -15.61526 -15.54060 -14.56753 -14.53144 -14.37769 -14.07325 -13.58134 -13.48012 -13.06841 -12.62704 -12.47449 -12.13724 -12.09018 -11.81713 -11.66342 -11.55135 -11.36183 -11.11834 -10.97372 -10.48713 -10.04775 -9.87985 -9.50069 -9.01692 -8.71323 -8.24848 -8.04645 -7.90157 -7.08283 -6.79824 -4.67979 1.47725 1.76103 2.14613 2.49281 2.97267 3.05224 3.17211 3.33394 3.56902 3.83688 4.34876 4.47718 4.92759 5.16915 5.20965 5.35654 5.37801 5.57097 5.68027 5.75676 5.94078 6.01452 6.12256 6.20643 6.25607 6.27421 6.44702 6.49699 6.57154 6.77008 6.83146 6.93036 7.08866 7.16500 7.30876 7.41091 7.62076 7.71146 7.84552 8.03771 8.31636 8.46649 8.53358 9.28544 9.91910 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.007199 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.301491 B = 3888.416786 C = 5358.164031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.009 3.991 3 C -0.133 4.133 4 C -0.185 4.185 5 C 0.056 3.944 6 C -0.453 4.453 7 H 0.108 0.892 8 C 0.087 3.913 9 N -0.812 5.812 10 Si 0.901 3.099 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.248 1.248 14 C 0.105 3.895 15 C -0.088 4.088 16 C 0.067 3.933 17 N -0.579 5.579 18 H 0.416 0.584 19 C 0.268 3.732 20 N -0.507 5.507 21 C 0.120 3.880 22 C -0.219 4.219 23 C -0.014 4.014 24 C -0.124 4.124 25 N -0.454 5.454 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.288 0.712 32 H 0.216 0.784 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 -4.824 -0.044 7.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C -0.154 4.154 4 C -0.210 4.210 5 C 0.051 3.949 6 C -0.483 4.483 7 H 0.126 0.874 8 C -0.132 4.132 9 N -0.437 5.437 10 Si 0.726 3.274 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.171 1.171 14 C -0.036 4.036 15 C -0.095 4.095 16 C -0.061 4.061 17 N -0.184 5.184 18 H 0.252 0.748 19 C 0.035 3.965 20 N -0.221 5.221 21 C -0.045 4.045 22 C -0.241 4.241 23 C -0.040 4.040 24 C -0.131 4.131 25 N -0.162 5.162 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.098 0.902 32 H 0.231 0.769 33 H 0.168 0.832 34 H 0.146 0.854 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.254 -6.038 -0.169 8.006 hybrid contribution -0.013 1.841 -0.563 1.925 sum -5.267 -4.197 -0.732 6.775 Atomic orbital electron populations 1.20365 0.91115 1.01292 1.00883 1.20294 0.95222 0.88328 1.09050 1.21105 0.95001 0.97575 1.01690 1.21259 0.93782 0.97735 1.08210 1.19474 0.94343 0.90440 0.90627 1.19274 0.89406 1.18797 1.20775 0.87447 1.26005 0.94870 0.94615 0.97677 1.69599 1.07625 1.31968 1.34469 0.86405 0.80553 0.80686 0.79729 1.19133 1.21154 1.17108 1.20129 0.87601 0.89839 1.06015 1.18319 0.91096 0.89295 1.10836 1.23669 0.98823 0.82859 1.00712 1.41580 1.07156 1.05819 1.63839 0.74767 1.18509 0.86841 0.89129 1.01991 1.66406 1.24082 1.13897 1.17689 1.22209 0.86374 0.99377 0.96532 1.21778 1.00064 0.93951 1.08329 1.21117 0.95781 0.95000 0.92121 1.19758 0.93503 0.93795 1.06061 1.66990 1.09708 1.28592 1.10947 0.92782 0.92209 0.92593 0.87805 0.86891 0.90164 0.76852 0.83173 0.85379 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.13 36.01 0.36 -0.89 16 2 C 0.01 0.19 6.77 -82.51 -0.56 -0.37 16 3 C -0.13 -2.74 9.57 -39.93 -0.38 -3.12 16 4 C -0.18 -4.14 7.25 -38.98 -0.28 -4.42 16 5 C 0.06 1.33 4.98 -104.48 -0.52 0.81 16 6 C -0.45 -10.80 7.14 -37.98 -0.27 -11.08 16 7 H 0.11 2.60 5.97 -52.49 -0.31 2.29 16 8 C 0.09 2.05 5.49 -17.33 -0.10 1.95 16 9 N -0.81 -19.45 13.93 55.55 0.77 -18.67 16 10 Si 0.90 19.27 24.76 -169.99 -4.21 15.06 16 11 H -0.27 -5.51 6.79 56.52 0.38 -5.12 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 13 H -0.25 -5.61 6.97 56.52 0.39 -5.22 16 14 C 0.11 2.47 6.96 -80.38 -0.56 1.91 16 15 C -0.09 -1.93 6.24 -103.24 -0.64 -2.57 16 16 C 0.07 1.32 10.39 -16.36 -0.17 1.15 16 17 N -0.58 -10.13 5.99 -11.85 -0.07 -10.20 16 18 H 0.42 5.87 8.96 -40.82 -0.37 5.51 16 19 C 0.27 5.14 8.41 -155.51 -1.31 3.83 16 20 N -0.51 -9.03 10.39 -12.27 -0.13 -9.16 16 21 C 0.12 1.81 11.15 -17.52 -0.20 1.61 16 22 C -0.22 -3.27 10.10 -39.42 -0.40 -3.67 16 23 C -0.01 -0.25 9.96 -39.11 -0.39 -0.64 16 24 C -0.12 -2.52 6.28 -104.93 -0.66 -3.18 16 25 N -0.45 -10.19 9.17 -4.37 -0.04 -10.23 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 29 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.11 2.45 5.84 -52.49 -0.31 2.14 16 31 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 32 H 0.22 4.31 4.71 -52.49 -0.25 4.06 16 33 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.14 2.52 7.37 -52.49 -0.39 2.13 16 LS Contribution 295.60 15.07 4.45 4.45 Total: -1.00 -27.64 295.60 -8.60 -36.24 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.31 Total: 11.18 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -6.07 Total: -18.67 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.54 Total: -48.26 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.21 Total: 15.06 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.64 -8.60 -36.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242862156.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.420 kcal (2) G-P(sol) polarization free energy of solvation -27.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds