Wall clock time and date at job start Tue Mar 31 2020 00:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38725 * 118.91515 * 2 1 4 4 C 1.36789 * 120.43513 * 180.02562 * 3 2 1 5 5 C 1.41195 * 118.37474 * 359.97438 * 4 3 2 6 6 C 1.40760 * 120.98051 * 180.02562 * 5 4 3 7 7 H 1.07994 * 119.99861 * 136.22136 * 6 5 4 8 8 C 1.39960 * 119.99968 * 316.22012 * 6 5 4 9 9 N 1.30848 * 120.00300 * 172.31902 * 8 6 5 10 10 Si 1.86804 * 120.00270 * 352.32281 * 8 6 5 11 11 H 1.48503 * 109.47298 * 89.29586 * 10 8 6 12 12 H 1.48496 * 109.47315 * 209.30039 * 10 8 6 13 13 H 1.48499 * 109.46591 * 329.29888 * 10 8 6 14 14 C 1.46523 * 118.04261 * 0.02562 * 5 4 3 15 15 C 1.47260 * 120.33420 * 180.02562 * 14 5 4 16 16 C 1.36414 * 126.79903 * 352.80461 * 15 14 5 17 17 N 1.35997 * 109.67401 * 180.02562 * 16 15 14 18 18 H 0.96998 * 124.75704 * 179.74018 * 17 16 15 19 19 C 1.37694 * 110.48047 * 0.02562 * 17 16 15 20 20 N 1.32664 * 132.92198 * 179.97438 * 19 17 16 21 21 C 1.31621 * 121.69955 * 180.02562 * 20 19 17 22 22 C 1.38582 * 121.54478 * 359.97438 * 21 20 19 23 23 C 1.38339 * 119.33696 * 359.97438 * 22 21 20 24 24 C 1.39393 * 118.05768 * 0.03012 * 23 22 21 25 25 N 1.31609 * 118.90657 * 180.27288 * 2 1 3 26 26 H 1.08998 * 109.46675 * 90.00225 * 1 2 3 27 27 H 1.08996 * 109.47333 * 210.00246 * 1 2 3 28 28 H 1.09000 * 109.46761 * 330.00495 * 1 2 3 29 29 H 1.07996 * 119.78491 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.80904 * 179.97438 * 4 3 2 31 31 H 0.96993 * 120.00600 * 179.97438 * 9 8 6 32 32 H 1.07999 * 125.15936 * 359.97124 * 16 15 14 33 33 H 1.07995 * 119.22871 * 179.97438 * 21 20 19 34 34 H 1.08007 * 120.33235 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.97336 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1778 1.2143 0.0000 4 6 3.5452 1.2506 -0.0005 5 6 4.2489 0.0265 -0.0005 6 6 5.6563 -0.0002 -0.0005 7 1 6.1833 -0.6855 0.6466 8 6 6.3725 0.8616 -0.8391 9 7 7.6740 0.9454 -0.7333 10 14 5.4705 1.8921 -2.1095 11 1 5.0740 3.1888 -1.5040 12 1 6.3631 2.1401 -3.2701 13 1 4.2572 1.1666 -2.5643 14 6 3.4711 -1.2152 -0.0005 15 6 4.1534 -2.5202 0.0001 16 6 5.4925 -2.7422 -0.1362 17 7 5.7425 -4.0781 -0.0862 18 1 6.6221 -4.4793 -0.1644 19 6 4.5712 -4.7814 0.0848 20 7 4.3019 -6.0762 0.1896 21 6 3.0719 -6.5159 0.3513 22 6 1.9945 -5.6470 0.4208 23 6 2.2146 -4.2851 0.3187 24 6 3.5257 -3.8437 0.1477 25 7 2.1432 -1.1521 -0.0055 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6167 2.1371 0.0004 30 1 4.0736 2.1926 -0.0009 31 1 8.1705 1.5423 -1.3148 32 1 6.2403 -1.9738 -0.2651 33 1 2.8981 -7.5788 0.4317 34 1 0.9932 -6.0293 0.5543 35 1 1.3945 -3.5842 0.3697 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242862156.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:36 Heat of formation + Delta-G solvation = 78.596309 kcal Electronic energy + Delta-G solvation = -20742.787147 eV Core-core repulsion = 17705.034095 eV Total energy + Delta-G solvation = -3037.753052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34338 -40.24445 -38.61543 -35.97998 -34.31150 -33.47979 -32.73711 -30.73715 -30.24823 -29.20749 -25.95503 -24.59684 -23.96095 -23.38821 -22.50855 -20.54631 -19.57924 -19.07144 -17.72361 -17.19506 -16.92117 -16.11620 -15.98984 -15.90097 -15.49188 -15.18492 -15.01439 -14.68320 -14.06183 -13.98723 -13.69659 -13.55806 -13.26340 -13.08449 -12.98142 -12.80131 -12.66432 -12.59569 -12.14375 -11.77313 -11.33941 -11.24657 -10.39229 -10.34723 -9.90372 -9.62351 -9.31527 -8.84259 -8.39728 -6.46575 0.00473 0.37312 0.62214 0.80080 1.25605 1.33553 1.44110 1.93824 1.99329 2.10933 2.67810 3.03590 3.48941 3.60101 3.73809 3.91084 4.10144 4.21125 4.25753 4.37832 4.48617 4.54802 4.69112 4.82261 4.91317 4.97207 4.99830 5.06748 5.09749 5.26203 5.34980 5.43388 5.57369 5.62458 5.74798 5.84204 5.97453 6.12748 6.27286 6.49741 6.59502 6.75433 7.13524 7.59916 8.19801 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.007199 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.301491 B = 3888.416786 C = 5358.164031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.009 3.991 3 C -0.141 4.141 4 C -0.193 4.193 5 C 0.030 3.970 6 C -0.467 4.467 7 H 0.090 0.910 8 C 0.061 3.939 9 N -0.844 5.844 10 Si 0.943 3.057 11 H -0.253 1.253 12 H -0.276 1.276 13 H -0.269 1.269 14 C 0.091 3.909 15 C -0.124 4.124 16 C 0.073 3.927 17 N -0.568 5.568 18 H 0.429 0.571 19 C 0.253 3.747 20 N -0.519 5.519 21 C 0.127 3.873 22 C -0.200 4.200 23 C -0.032 4.032 24 C -0.153 4.153 25 N -0.469 5.469 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.116 0.884 31 H 0.293 0.707 32 H 0.206 0.794 33 H 0.198 0.802 34 H 0.171 0.829 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 -5.885 -0.130 10.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.130 4.130 3 C -0.161 4.161 4 C -0.219 4.219 5 C 0.025 3.975 6 C -0.497 4.497 7 H 0.107 0.893 8 C -0.154 4.154 9 N -0.471 5.471 10 Si 0.767 3.233 11 H -0.177 1.177 12 H -0.202 1.202 13 H -0.194 1.194 14 C -0.049 4.049 15 C -0.131 4.131 16 C -0.056 4.056 17 N -0.174 5.174 18 H 0.268 0.732 19 C 0.021 3.979 20 N -0.233 5.233 21 C -0.039 4.039 22 C -0.221 4.221 23 C -0.058 4.058 24 C -0.160 4.160 25 N -0.178 5.178 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.159 0.841 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.222 0.778 33 H 0.215 0.785 34 H 0.189 0.811 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.788 -7.111 -0.250 10.549 hybrid contribution 0.550 1.981 -0.471 2.109 sum -7.237 -5.130 -0.721 8.901 Atomic orbital electron populations 1.20462 0.87515 1.02993 1.02325 1.21222 0.97716 0.87928 1.06137 1.21509 0.94471 0.99247 1.00876 1.21455 0.94953 0.97366 1.08102 1.19656 0.94459 0.91371 0.91966 1.19180 0.89741 1.19315 1.21500 0.89267 1.26411 0.95225 0.95230 0.98508 1.69618 1.08277 1.33377 1.35823 0.85779 0.78945 0.79965 0.78595 1.17717 1.20205 1.19379 1.20487 0.88285 0.90508 1.05598 1.18531 0.92060 0.89803 1.12746 1.23418 0.98189 0.83665 1.00322 1.41460 1.07817 1.04988 1.63141 0.73158 1.18671 0.86782 0.89708 1.02737 1.66548 1.25697 1.12788 1.18313 1.23103 0.85335 1.01617 0.93804 1.22231 1.02170 0.92315 1.05394 1.21287 0.94750 0.96672 0.93139 1.19971 0.95036 0.93256 1.07752 1.67124 1.09266 1.29588 1.11787 0.91307 0.91672 0.89790 0.84147 0.86586 0.89587 0.77790 0.78509 0.81140 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 10.13 71.24 0.72 -1.45 16 2 C 0.01 0.35 6.77 42.71 0.29 0.64 16 3 C -0.14 -5.56 9.57 22.05 0.21 -5.35 16 4 C -0.19 -8.67 7.25 22.66 0.16 -8.51 16 5 C 0.03 1.48 4.98 -19.78 -0.10 1.38 16 6 C -0.47 -23.44 7.14 23.30 0.17 -23.27 16 7 H 0.09 4.66 5.97 -2.91 -0.02 4.64 16 8 C 0.06 2.99 5.49 85.26 0.47 3.46 16 9 N -0.84 -41.90 13.93 21.83 0.30 -41.59 16 10 Si 0.94 40.17 24.76 68.60 1.70 41.87 16 11 H -0.25 -10.08 6.79 99.48 0.68 -9.41 16 12 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.27 -12.30 6.97 99.48 0.69 -11.60 16 14 C 0.09 4.41 6.96 43.51 0.30 4.71 16 15 C -0.12 -5.63 6.24 -18.97 -0.12 -5.75 16 16 C 0.07 3.05 10.39 83.62 0.87 3.92 16 17 N -0.57 -20.41 5.99 -191.39 -1.15 -21.56 16 18 H 0.43 12.42 8.96 -92.71 -0.83 11.59 16 19 C 0.25 9.65 8.41 133.78 1.13 10.77 16 20 N -0.52 -17.49 10.39 -192.74 -2.00 -19.49 16 21 C 0.13 3.33 11.15 84.81 0.95 4.28 16 22 C -0.20 -5.26 10.10 22.38 0.23 -5.03 16 23 C -0.03 -1.12 9.96 22.57 0.22 -0.90 16 24 C -0.15 -6.29 6.28 -20.07 -0.13 -6.42 16 25 N -0.47 -21.04 9.17 -167.74 -1.54 -22.58 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 1.95 8.06 -2.39 -0.02 1.93 16 29 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.12 5.01 5.84 -2.91 -0.02 5.00 16 31 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 32 H 0.21 8.92 4.71 -2.91 -0.01 8.91 16 33 H 0.20 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.14 4.77 7.37 -2.91 -0.02 4.75 16 Total: -1.00 -61.76 295.60 2.96 -58.80 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.28 Total: 32.07 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 5.37 Total: -27.51 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -4.38 Total: -105.22 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.70 Total: 41.87 kcal Total: -61.76 2.96 -58.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242862156.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.392 kcal (2) G-P(sol) polarization free energy of solvation -61.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds