Wall clock time and date at job start Tue Mar 31 2020 00:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31246 * 119.78593 * 2 1 4 4 C 1.33201 * 121.69300 * 180.02562 * 3 2 1 5 5 C 1.47454 * 119.47237 * 179.97438 * 4 3 2 6 6 C 1.36299 * 126.79012 * 179.97438 * 5 4 3 7 7 N 1.36058 * 109.68779 * 179.97438 * 6 5 4 8 8 H 0.96993 * 124.77297 * 180.02562 * 7 6 5 9 9 C 1.37682 * 110.45280 * 0.02562 * 7 6 5 10 10 N 1.32664 * 132.92987 * 180.02562 * 9 7 6 11 11 C 1.31620 * 121.69510 * 179.97438 * 10 9 7 12 12 C 1.38595 * 121.54692 * 0.02562 * 11 10 9 13 13 C 1.38327 * 119.34195 * 0.27229 * 12 11 10 14 14 C 1.39420 * 118.05459 * 359.46783 * 13 12 11 15 15 C 1.40187 * 121.05275 * 0.25068 * 4 3 2 16 16 C 1.36426 * 119.45359 * 359.46277 * 15 4 3 17 17 C 1.40959 * 119.79463 * 179.97438 * 2 1 3 18 18 C 1.40965 * 120.53158 * 359.97438 * 17 2 1 19 19 H 1.08001 * 120.00357 * 24.96319 * 18 17 2 20 20 C 1.39901 * 119.99901 * 204.96140 * 18 17 2 21 21 N 1.30875 * 120.00114 * 14.82575 * 20 18 17 22 22 Si 1.86803 * 120.00178 * 194.82743 * 20 18 17 23 23 H 1.48499 * 109.46934 * 60.00054 * 22 20 18 24 24 H 1.48498 * 109.47246 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46842 * 300.00182 * 22 20 18 26 26 H 1.08992 * 109.47424 * 90.00647 * 1 2 3 27 27 H 1.09007 * 109.46823 * 210.00205 * 1 2 3 28 28 H 1.09003 * 109.47195 * 329.99646 * 1 2 3 29 29 H 1.07998 * 125.15550 * 359.96970 * 6 5 4 30 30 H 1.07998 * 119.22441 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.32538 * 179.97438 * 12 11 10 32 32 H 1.07999 * 120.97308 * 179.70095 * 13 12 11 33 33 H 1.07995 * 120.26850 * 179.73084 * 15 4 3 34 34 H 1.07997 * 120.77291 * 180.24052 * 16 15 4 35 35 H 0.97005 * 120.00081 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1391 0.0000 4 6 3.4902 1.1834 -0.0005 5 6 4.1726 2.4906 -0.0011 6 6 5.5180 2.7091 -0.0011 7 7 5.7650 4.0470 -0.0023 8 1 6.6490 4.4463 -0.0029 9 6 4.5838 4.7544 -0.0024 10 7 4.3077 6.0520 -0.0038 11 6 3.0684 6.4952 -0.0041 12 6 1.9878 5.6273 -0.0025 13 6 2.2145 4.2628 0.0052 14 6 3.5356 3.8175 -0.0003 15 6 4.2529 0.0072 -0.0063 16 6 3.6212 -1.2020 -0.0004 17 6 2.2074 -1.2233 0.0005 18 6 1.5095 -2.4480 0.0016 19 1 0.5053 -2.4978 -0.3927 20 6 2.1178 -3.5992 0.5135 21 7 3.1975 -3.4982 1.2463 22 14 1.3891 -5.2806 0.1510 23 1 1.3715 -5.5065 -1.3166 24 1 2.2139 -6.3288 0.8037 25 1 0.0022 -5.3430 0.6781 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 6.2733 1.9372 -0.0003 30 1 2.8893 7.5603 -0.0056 31 1 0.9789 6.0127 -0.0023 32 1 1.3920 3.5628 0.0115 33 1 5.3317 0.0579 -0.0110 34 1 4.1878 -2.1214 -0.0008 35 1 3.6190 -4.2964 1.6015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242863040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:40 Heat of formation + Delta-G solvation = 86.052041 kcal Electronic energy + Delta-G solvation = -20220.909682 eV Core-core repulsion = 17183.479934 eV Total energy + Delta-G solvation = -3037.429747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03897 -38.45602 -37.35167 -34.32170 -32.73422 -31.76247 -30.67528 -29.48976 -28.71620 -26.93738 -24.97415 -23.27354 -22.21535 -22.04460 -20.41762 -19.03966 -17.91348 -17.39796 -16.27936 -15.75336 -15.32326 -14.65680 -14.57838 -14.39934 -14.10729 -13.60842 -13.11794 -12.84386 -12.59561 -12.35179 -12.00370 -11.76679 -11.73503 -11.60692 -11.42932 -11.26966 -11.12498 -10.92894 -10.69287 -9.94724 -9.82506 -9.47174 -9.07692 -8.33537 -8.13072 -8.05170 -8.01536 -7.05668 -6.84174 -4.50353 1.37531 1.71530 2.32677 2.91838 2.93720 2.95464 2.98013 3.14594 3.54913 3.75593 4.28475 4.60699 4.82741 5.16400 5.21069 5.34062 5.54791 5.57926 5.70973 5.83262 6.04787 6.10964 6.25913 6.35501 6.52245 6.62607 6.66613 6.75700 6.81956 6.85967 6.91978 7.03006 7.11823 7.29751 7.37073 7.63339 7.71542 7.81269 7.90979 8.33242 8.34995 8.55455 8.64889 9.60658 9.92686 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033382 B = 0.004242 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.572750 B = 6598.789292 C = 7358.978635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.008 3.992 3 N -0.449 5.449 4 C 0.039 3.961 5 C -0.051 4.051 6 C 0.021 3.979 7 N -0.578 5.578 8 H 0.414 0.586 9 C 0.275 3.725 10 N -0.512 5.512 11 C 0.128 3.872 12 C -0.222 4.222 13 C -0.004 4.004 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.137 4.137 17 C 0.070 3.930 18 C -0.434 4.434 19 H 0.087 0.913 20 C 0.072 3.928 21 N -0.783 5.783 22 Si 0.914 3.086 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.262 1.262 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.175 0.825 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 7.355 -1.533 7.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.137 4.137 3 N -0.158 5.158 4 C -0.096 4.096 5 C -0.058 4.058 6 C -0.105 4.105 7 N -0.184 5.184 8 H 0.250 0.750 9 C 0.042 3.958 10 N -0.226 5.226 11 C -0.037 4.037 12 C -0.244 4.244 13 C -0.030 4.030 14 C -0.138 4.138 15 C -0.153 4.153 16 C -0.162 4.162 17 C 0.065 3.935 18 C -0.463 4.463 19 H 0.105 0.895 20 C -0.148 4.148 21 N -0.407 5.407 22 Si 0.738 3.262 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.187 1.187 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.192 0.808 30 H 0.170 0.830 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.115 0.885 34 H 0.146 0.854 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.988 8.519 -1.381 8.856 hybrid contribution 0.157 -2.054 -0.022 2.060 sum 2.145 6.465 -1.403 6.954 Atomic orbital electron populations 1.20255 0.91122 1.01190 1.00321 1.20975 0.95067 0.88026 1.09621 1.66763 1.08536 1.30209 1.10255 1.18026 0.88821 0.89057 1.13716 1.18772 0.90578 0.90496 1.05979 1.21693 0.96827 0.83312 1.08656 1.41128 1.06352 1.05043 1.65879 0.74952 1.18428 0.86327 0.89194 1.01855 1.66413 1.24030 1.13639 1.18492 1.22260 0.86198 0.99475 0.95798 1.21824 1.00123 0.93920 1.08572 1.21234 0.96025 0.95041 0.90688 1.19734 0.93422 0.93581 1.07110 1.21183 0.98251 0.93372 1.02450 1.21313 0.94754 0.96653 1.03510 1.18388 0.92517 0.93138 0.89437 1.19589 1.01452 0.92012 1.33245 0.89507 1.26047 0.94326 1.01893 0.92541 1.69802 1.16655 1.32243 1.22009 0.86247 0.80010 0.79884 0.80042 1.18588 1.20153 1.18667 0.93366 0.91509 0.93233 0.80827 0.83022 0.85173 0.83741 0.88481 0.85414 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.57 36.00 0.34 -1.10 16 2 C 0.01 0.19 6.86 -81.81 -0.56 -0.37 16 3 N -0.45 -10.72 9.01 -5.43 -0.05 -10.77 16 4 C 0.04 0.90 6.76 -82.79 -0.56 0.34 16 5 C -0.05 -1.02 6.26 -103.21 -0.65 -1.67 16 6 C 0.02 0.35 11.26 -16.38 -0.18 0.16 16 7 N -0.58 -8.68 6.00 -11.86 -0.07 -8.76 16 8 H 0.41 4.72 8.96 -40.82 -0.37 4.36 16 9 C 0.28 4.88 8.41 -155.51 -1.31 3.57 16 10 N -0.51 -8.55 10.39 -12.27 -0.13 -8.68 16 11 C 0.13 1.83 11.15 -17.51 -0.20 1.63 16 12 C -0.22 -3.23 10.10 -39.42 -0.40 -3.63 16 13 C 0.00 -0.07 9.92 -39.11 -0.39 -0.45 16 14 C -0.13 -2.55 6.26 -104.94 -0.66 -3.21 16 15 C -0.13 -2.97 9.53 -39.50 -0.38 -3.35 16 16 C -0.14 -3.38 8.72 -39.03 -0.34 -3.72 16 17 C 0.07 1.76 5.59 -106.63 -0.60 1.17 16 18 C -0.43 -10.54 8.15 -37.93 -0.31 -10.84 16 19 H 0.09 1.99 6.83 -52.49 -0.36 1.63 16 20 C 0.07 1.65 5.22 -17.34 -0.09 1.56 16 21 N -0.78 -18.72 10.84 55.55 0.60 -18.11 16 22 Si 0.91 17.18 29.58 -169.99 -5.03 12.15 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 24 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 25 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.32 6.75 -51.93 -0.35 0.97 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.17 2.28 7.20 -52.49 -0.38 1.91 16 30 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.14 2.67 7.28 -52.49 -0.38 2.28 16 33 H 0.10 1.86 6.96 -52.49 -0.37 1.50 16 34 H 0.13 3.18 6.17 -52.49 -0.32 2.85 16 35 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -28.89 301.74 -9.74 -38.64 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -3.35 Total: 10.88 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -6.26 Total: -19.90 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.35 Total: -46.32 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.89 -9.74 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242863040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.687 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds