Wall clock time and date at job start Tue Mar 31 2020 00:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31246 * 119.78593 * 2 1 4 4 C 1.33201 * 121.69300 * 180.02562 * 3 2 1 5 5 C 1.47454 * 119.47237 * 179.97438 * 4 3 2 6 6 C 1.36299 * 126.79012 * 179.97438 * 5 4 3 7 7 N 1.36058 * 109.68779 * 179.97438 * 6 5 4 8 8 H 0.96993 * 124.77297 * 180.02562 * 7 6 5 9 9 C 1.37682 * 110.45280 * 0.02562 * 7 6 5 10 10 N 1.32664 * 132.92987 * 180.02562 * 9 7 6 11 11 C 1.31620 * 121.69510 * 179.97438 * 10 9 7 12 12 C 1.38595 * 121.54692 * 0.02562 * 11 10 9 13 13 C 1.38327 * 119.34195 * 0.27229 * 12 11 10 14 14 C 1.39420 * 118.05459 * 359.46783 * 13 12 11 15 15 C 1.40187 * 121.05275 * 0.25068 * 4 3 2 16 16 C 1.36426 * 119.45359 * 359.46277 * 15 4 3 17 17 C 1.40959 * 119.79463 * 179.97438 * 2 1 3 18 18 C 1.40965 * 120.53158 * 359.97438 * 17 2 1 19 19 H 1.08001 * 120.00357 * 24.96319 * 18 17 2 20 20 C 1.39901 * 119.99901 * 204.96140 * 18 17 2 21 21 N 1.30875 * 120.00114 * 14.82575 * 20 18 17 22 22 Si 1.86803 * 120.00178 * 194.82743 * 20 18 17 23 23 H 1.48499 * 109.46934 * 60.00054 * 22 20 18 24 24 H 1.48498 * 109.47246 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46842 * 300.00182 * 22 20 18 26 26 H 1.08992 * 109.47424 * 90.00647 * 1 2 3 27 27 H 1.09007 * 109.46823 * 210.00205 * 1 2 3 28 28 H 1.09003 * 109.47195 * 329.99646 * 1 2 3 29 29 H 1.07998 * 125.15550 * 359.96970 * 6 5 4 30 30 H 1.07998 * 119.22441 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.32538 * 179.97438 * 12 11 10 32 32 H 1.07999 * 120.97308 * 179.70095 * 13 12 11 33 33 H 1.07995 * 120.26850 * 179.73084 * 15 4 3 34 34 H 1.07997 * 120.77291 * 180.24052 * 16 15 4 35 35 H 0.97005 * 120.00081 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1391 0.0000 4 6 3.4902 1.1834 -0.0005 5 6 4.1726 2.4906 -0.0011 6 6 5.5180 2.7091 -0.0011 7 7 5.7650 4.0470 -0.0023 8 1 6.6490 4.4463 -0.0029 9 6 4.5838 4.7544 -0.0024 10 7 4.3077 6.0520 -0.0038 11 6 3.0684 6.4952 -0.0041 12 6 1.9878 5.6273 -0.0025 13 6 2.2145 4.2628 0.0052 14 6 3.5356 3.8175 -0.0003 15 6 4.2529 0.0072 -0.0063 16 6 3.6212 -1.2020 -0.0004 17 6 2.2074 -1.2233 0.0005 18 6 1.5095 -2.4480 0.0016 19 1 0.5053 -2.4978 -0.3927 20 6 2.1178 -3.5992 0.5135 21 7 3.1975 -3.4982 1.2463 22 14 1.3891 -5.2806 0.1510 23 1 1.3715 -5.5065 -1.3166 24 1 2.2139 -6.3288 0.8037 25 1 0.0022 -5.3430 0.6781 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 6.2733 1.9372 -0.0003 30 1 2.8893 7.5603 -0.0056 31 1 0.9789 6.0127 -0.0023 32 1 1.3920 3.5628 0.0115 33 1 5.3317 0.0579 -0.0110 34 1 4.1878 -2.1214 -0.0008 35 1 3.6190 -4.2964 1.6015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242863040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:39 Heat of formation + Delta-G solvation = 70.406635 kcal Electronic energy + Delta-G solvation = -20221.588117 eV Core-core repulsion = 17183.479934 eV Total energy + Delta-G solvation = -3038.108183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33947 -40.18418 -38.62160 -36.03426 -34.20436 -33.32168 -32.37273 -30.82940 -30.10811 -28.65595 -26.62290 -24.55152 -23.80431 -23.43503 -22.11291 -20.54960 -19.26526 -19.10840 -17.66895 -17.14700 -16.77340 -16.24758 -15.96441 -15.81665 -15.56354 -15.14692 -14.82597 -14.25042 -14.05875 -13.70490 -13.44130 -13.33402 -13.29531 -13.25725 -12.89853 -12.79930 -12.63031 -12.59957 -12.19373 -11.57750 -11.35773 -11.09823 -10.37913 -10.10770 -9.79992 -9.67985 -9.33779 -8.72516 -8.43763 -6.29823 0.05215 0.43804 0.74569 1.13211 1.40652 1.46322 1.52643 1.92644 2.00165 2.19493 2.82602 3.06527 3.66511 3.76284 3.79670 3.91829 4.14334 4.25175 4.41307 4.51641 4.57430 4.63710 4.71357 4.87437 5.01229 5.06092 5.09045 5.15346 5.17352 5.34264 5.42112 5.55983 5.57206 5.68139 5.90427 5.99592 6.09691 6.15924 6.49745 6.54490 6.78311 6.86313 7.12612 7.82724 8.25098 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033382 B = 0.004242 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.572750 B = 6598.789292 C = 7358.978635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.015 4.015 3 N -0.464 5.464 4 C 0.042 3.958 5 C -0.113 4.113 6 C 0.064 3.936 7 N -0.561 5.561 8 H 0.433 0.567 9 C 0.258 3.742 10 N -0.518 5.518 11 C 0.130 3.870 12 C -0.205 4.205 13 C -0.034 4.034 14 C -0.159 4.159 15 C -0.140 4.140 16 C -0.157 4.157 17 C 0.037 3.963 18 C -0.464 4.464 19 H 0.091 0.909 20 C 0.034 3.966 21 N -0.817 5.817 22 Si 0.985 3.015 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.257 1.257 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.209 0.791 30 H 0.198 0.802 31 H 0.165 0.835 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 8.957 -1.743 9.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.159 4.159 3 N -0.173 5.173 4 C -0.095 4.095 5 C -0.120 4.120 6 C -0.064 4.064 7 N -0.169 5.169 8 H 0.274 0.726 9 C 0.025 3.975 10 N -0.233 5.233 11 C -0.035 4.035 12 C -0.226 4.226 13 C -0.060 4.060 14 C -0.166 4.166 15 C -0.160 4.160 16 C -0.182 4.182 17 C 0.033 3.967 18 C -0.493 4.493 19 H 0.109 0.891 20 C -0.182 4.182 21 N -0.442 5.442 22 Si 0.806 3.194 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.181 1.181 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.226 0.774 30 H 0.214 0.786 31 H 0.183 0.817 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.542 10.159 -1.590 10.593 hybrid contribution 0.081 -2.241 0.046 2.243 sum 2.623 7.918 -1.545 8.484 Atomic orbital electron populations 1.20225 0.89083 1.01578 1.01213 1.21529 0.96796 0.87964 1.09599 1.66879 1.09305 1.30045 1.11102 1.18588 0.88832 0.90637 1.11409 1.18816 0.92369 0.89827 1.11035 1.22159 0.96180 0.84359 1.03721 1.41135 1.06849 1.04485 1.64402 0.72636 1.18606 0.86670 0.89482 1.02739 1.66556 1.25268 1.12817 1.18618 1.23061 0.85236 1.01513 0.93721 1.22214 1.02168 0.92412 1.05823 1.21319 0.95321 0.96534 0.92857 1.19994 0.94667 0.93811 1.08137 1.21474 0.99914 0.92609 1.02052 1.21372 0.94946 0.97112 1.04772 1.18742 0.93191 0.94123 0.90694 1.19804 1.02031 0.92713 1.34760 0.89138 1.26855 0.94523 1.05136 0.91703 1.69854 1.17951 1.33474 1.22891 0.85184 0.79326 0.75185 0.79731 1.18392 1.19363 1.18077 0.92122 0.91536 0.92243 0.77436 0.78560 0.81710 0.85471 0.85357 0.86418 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.64 9.57 71.24 0.68 -1.95 16 2 C -0.02 -0.77 6.86 43.31 0.30 -0.47 16 3 N -0.46 -22.93 9.01 -171.10 -1.54 -24.47 16 4 C 0.04 1.95 6.76 41.84 0.28 2.23 16 5 C -0.11 -4.51 6.26 -18.95 -0.12 -4.63 16 6 C 0.06 1.95 11.26 83.59 0.94 2.90 16 7 N -0.56 -15.44 6.00 -191.43 -1.15 -16.59 16 8 H 0.43 8.48 8.96 -92.71 -0.83 7.65 16 9 C 0.26 8.67 8.41 133.79 1.13 9.79 16 10 N -0.52 -15.91 10.39 -192.73 -2.00 -17.91 16 11 C 0.13 3.26 11.15 84.81 0.95 4.21 16 12 C -0.20 -5.46 10.10 22.38 0.23 -5.23 16 13 C -0.03 -1.20 9.92 22.58 0.22 -0.98 16 14 C -0.16 -6.12 6.26 -20.07 -0.13 -6.25 16 15 C -0.14 -6.42 9.53 22.32 0.21 -6.21 16 16 C -0.16 -8.00 8.72 22.62 0.20 -7.81 16 17 C 0.04 1.95 5.59 -21.17 -0.12 1.83 16 18 C -0.46 -23.36 8.15 23.34 0.19 -23.17 16 19 H 0.09 4.29 6.83 -2.91 -0.02 4.27 16 20 C 0.03 1.61 5.22 85.24 0.44 2.05 16 21 N -0.82 -40.19 10.84 21.82 0.24 -39.96 16 22 Si 0.99 35.54 29.58 68.60 2.03 37.57 16 23 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 24 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 25 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 26 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.07 2.71 6.75 -2.38 -0.02 2.69 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.21 4.72 7.20 -2.91 -0.02 4.70 16 30 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.13 4.86 7.28 -2.91 -0.02 4.84 16 33 H 0.13 4.82 6.96 -2.91 -0.02 4.80 16 34 H 0.12 6.13 6.17 -2.91 -0.02 6.11 16 35 H 0.29 12.95 8.30 -92.70 -0.77 12.18 16 Total: -1.00 -65.68 301.74 3.30 -62.38 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.32 Total: 32.66 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 5.41 Total: -33.69 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -4.46 Total: -98.93 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Total: -65.68 3.30 -62.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242863040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.788 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds