Wall clock time and date at job start Tue Mar 31 2020 00:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31190 * 119.78314 * 2 1 4 4 C 1.33320 * 121.67564 * 179.97438 * 3 2 1 5 5 C 1.47147 * 119.48391 * 179.97438 * 4 3 2 6 6 C 1.40410 * 126.55660 * 180.02562 * 5 4 3 7 7 N 1.30850 * 108.80890 * 180.02562 * 6 5 4 8 8 N 1.40003 * 109.57328 * 359.97438 * 7 6 5 9 9 C 1.36357 * 132.08254 * 179.97438 * 8 7 6 10 10 C 1.35258 * 120.67168 * 179.16887 * 9 8 7 11 11 C 1.40140 * 120.33700 * 0.71759 * 10 9 8 12 12 C 1.36589 * 119.44852 * 359.55571 * 11 10 9 13 13 C 1.36843 * 107.85074 * 359.73277 * 8 7 6 14 14 C 1.40327 * 121.02909 * 359.97438 * 4 3 2 15 15 C 1.36335 * 119.45170 * 0.02562 * 14 4 3 16 16 C 1.40991 * 119.78754 * 179.97438 * 2 1 3 17 17 C 1.40912 * 120.51807 * 0.02562 * 16 2 1 18 18 H 1.08005 * 120.00110 * 25.01490 * 17 16 2 19 19 C 1.39792 * 120.00137 * 205.00615 * 17 16 2 20 20 N 1.30941 * 119.99511 * 14.90362 * 19 17 16 21 21 Si 1.86805 * 119.99955 * 194.90826 * 19 17 16 22 22 H 1.48489 * 109.47155 * 89.99992 * 21 19 17 23 23 H 1.48504 * 109.46560 * 210.00088 * 21 19 17 24 24 H 1.48499 * 109.46879 * 329.99733 * 21 19 17 25 25 H 1.09001 * 109.46688 * 89.99752 * 1 2 3 26 26 H 1.09003 * 109.47221 * 209.99797 * 1 2 3 27 27 H 1.09000 * 109.47343 * 330.00134 * 1 2 3 28 28 H 1.08004 * 125.59085 * 0.02562 * 6 5 4 29 29 H 1.07998 * 119.66016 * 359.97438 * 9 8 7 30 30 H 1.08003 * 119.82873 * 180.26711 * 10 9 8 31 31 H 1.07993 * 120.27354 * 179.57947 * 11 10 9 32 32 H 1.07992 * 120.36706 * 179.97438 * 12 11 10 33 33 H 1.08007 * 120.27445 * 179.97438 * 14 4 3 34 34 H 1.08005 * 120.77433 * 179.97438 * 15 14 4 35 35 H 0.97002 * 119.99896 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1386 0.0000 4 6 3.4911 1.1826 0.0005 5 6 4.1727 2.4868 -0.0001 6 6 5.5596 2.7056 -0.0002 7 7 5.7833 3.9948 -0.0002 8 7 4.5638 4.6824 -0.0007 9 6 4.2648 6.0128 -0.0005 10 6 2.9786 6.4310 -0.0181 11 6 1.9315 5.4996 -0.0216 12 6 2.2202 4.1646 -0.0164 13 6 3.5586 3.7539 -0.0071 14 6 4.2538 0.0047 0.0016 15 6 3.6216 -1.2032 0.0016 16 6 2.2074 -1.2236 0.0005 17 6 1.5094 -2.4477 0.0006 18 1 0.5057 -2.4970 -0.3953 19 6 2.1160 -3.5983 0.5128 20 7 3.1943 -3.4974 1.2488 21 14 1.3883 -5.2795 0.1472 22 1 1.9890 -5.8184 -1.0993 23 1 1.6790 -6.2005 1.2753 24 1 -0.0815 -5.1559 -0.0248 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 6.3174 1.9360 -0.0002 29 1 5.0633 6.7400 0.0006 30 1 2.7574 7.4881 -0.0220 31 1 0.9049 5.8346 -0.0287 32 1 1.4249 3.4340 -0.0186 33 1 5.3327 0.0546 0.0016 34 1 4.1875 -2.1231 0.0020 35 1 3.6150 -4.2958 1.6046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242963785.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:50 Heat of formation + Delta-G solvation = 121.994619 kcal Electronic energy + Delta-G solvation = -20297.923283 eV Core-core repulsion = 17262.052122 eV Total energy + Delta-G solvation = -3035.871160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49247 -38.42400 -36.80760 -34.29408 -32.76429 -31.58477 -30.68977 -30.19869 -28.14911 -26.93110 -24.86348 -23.44589 -22.43961 -21.85629 -20.44899 -19.73989 -17.42502 -16.72971 -16.42597 -15.74668 -15.41056 -15.17640 -14.57434 -14.41609 -14.20979 -13.67673 -13.10041 -12.99743 -12.38810 -12.03799 -11.84881 -11.69406 -11.63142 -11.52057 -11.40942 -11.22108 -11.11022 -10.91610 -10.64391 -10.31110 -10.03553 -9.75201 -9.44210 -9.00186 -8.27868 -8.04178 -7.88665 -6.96831 -6.62561 -4.44241 1.07198 1.39996 2.42235 2.64152 2.94000 2.97243 2.98861 3.00797 3.41635 3.78052 3.86183 4.57643 4.61904 4.99277 5.04018 5.16274 5.43236 5.59396 5.60646 5.78462 5.89537 5.98874 6.18448 6.34606 6.38506 6.50996 6.56545 6.63457 6.75825 6.81445 6.87823 6.92915 7.02031 7.13354 7.29646 7.33799 7.73115 7.82969 7.90275 8.02741 8.37144 8.59623 8.68820 9.61685 9.96909 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033377 B = 0.004311 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.706544 B = 6493.615759 C = 7254.442817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.008 3.992 3 N -0.458 5.458 4 C 0.055 3.945 5 C -0.136 4.136 6 C 0.073 3.927 7 N -0.329 5.329 8 N -0.278 5.278 9 C 0.093 3.907 10 C -0.162 4.162 11 C -0.125 4.125 12 C -0.067 4.067 13 C 0.091 3.909 14 C -0.134 4.134 15 C -0.134 4.134 16 C 0.067 3.933 17 C -0.435 4.435 18 H 0.087 0.913 19 C 0.071 3.929 20 N -0.785 5.785 21 Si 0.914 3.086 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.260 1.260 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.189 0.811 29 H 0.159 0.841 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 9.665 -1.596 9.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.136 4.136 3 N -0.167 5.167 4 C -0.081 4.081 5 C -0.148 4.148 6 C -0.105 4.105 7 N -0.152 5.152 8 N -0.047 5.047 9 C -0.032 4.032 10 C -0.185 4.185 11 C -0.148 4.148 12 C -0.087 4.087 13 C -0.027 4.027 14 C -0.154 4.154 15 C -0.159 4.159 16 C 0.063 3.937 17 C -0.464 4.464 18 H 0.105 0.895 19 C -0.148 4.148 20 N -0.409 5.409 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.183 1.183 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.206 0.794 29 H 0.176 0.824 30 H 0.163 0.837 31 H 0.151 0.849 32 H 0.177 0.823 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.040 11.104 -1.440 11.197 hybrid contribution -0.152 -2.224 -0.025 2.230 sum -0.192 8.880 -1.465 9.002 Atomic orbital electron populations 1.20251 0.91166 1.01144 1.00274 1.20940 0.94988 0.88060 1.09603 1.66758 1.08458 1.30266 1.11191 1.17894 0.88649 0.88929 1.12672 1.18692 0.91081 0.90614 1.14421 1.23838 0.96029 0.92973 0.97617 1.77369 0.99984 1.06117 1.31779 1.45832 1.06138 1.05095 1.47604 1.21303 0.98027 0.82119 1.01746 1.20706 0.90873 1.00748 1.06131 1.21103 0.99515 0.92640 1.01554 1.20957 0.94348 0.96464 0.96934 1.19387 0.89437 0.89376 1.04486 1.21165 0.98337 0.93258 1.02682 1.21311 0.94740 0.96660 1.03165 1.18377 0.92494 0.93135 0.89729 1.19572 1.01502 0.92044 1.33301 0.89540 1.26025 0.94362 1.01845 0.92581 1.69842 1.16838 1.32033 1.22183 0.86201 0.80606 0.80353 0.79047 1.19114 1.20134 1.18328 0.93409 0.91507 0.93313 0.79387 0.82393 0.83715 0.84892 0.82307 0.88423 0.85408 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 9.57 36.01 0.34 -1.08 16 2 C 0.01 0.20 6.86 -81.82 -0.56 -0.36 16 3 N -0.46 -10.91 8.49 -5.47 -0.05 -10.95 16 4 C 0.05 1.28 6.75 -82.82 -0.56 0.72 16 5 C -0.14 -2.87 6.15 -104.49 -0.64 -3.51 16 6 C 0.07 1.35 11.35 -17.15 -0.19 1.16 16 7 N -0.33 -6.11 12.58 30.74 0.39 -5.72 16 8 N -0.28 -4.93 3.87 -10.48 -0.04 -4.97 16 9 C 0.09 1.25 11.19 -16.60 -0.19 1.06 16 10 C -0.16 -1.85 9.98 -39.93 -0.40 -2.25 16 11 C -0.13 -1.62 10.09 -39.46 -0.40 -2.02 16 12 C -0.07 -1.14 9.69 -39.52 -0.38 -1.53 16 13 C 0.09 1.76 6.76 -84.00 -0.57 1.19 16 14 C -0.13 -3.10 9.54 -39.48 -0.38 -3.47 16 15 C -0.13 -3.34 8.72 -39.05 -0.34 -3.68 16 16 C 0.07 1.71 5.59 -106.63 -0.60 1.12 16 17 C -0.43 -10.66 8.14 -37.99 -0.31 -10.97 16 18 H 0.09 2.00 6.83 -52.48 -0.36 1.64 16 19 C 0.07 1.66 5.21 -17.35 -0.09 1.57 16 20 N -0.78 -19.03 10.84 55.54 0.60 -18.43 16 21 Si 0.91 17.41 29.58 -169.99 -5.03 12.38 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.32 6.75 -51.93 -0.35 0.97 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.19 2.93 7.28 -52.48 -0.38 2.55 16 29 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.16 2.84 6.84 -52.49 -0.36 2.48 16 33 H 0.10 1.96 6.99 -52.48 -0.37 1.60 16 34 H 0.13 3.24 6.17 -52.48 -0.32 2.91 16 35 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 LS Contribution 301.89 15.07 4.55 4.55 Total: -1.00 -29.12 301.89 -8.23 -37.35 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.39 Total: 7.85 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -5.26 Total: -22.06 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.90 Total: -40.07 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.12 -8.23 -37.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242963785.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.340 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds