Wall clock time and date at job start Tue Mar 31 2020 00:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31190 * 119.78314 * 2 1 4 4 C 1.33320 * 121.67564 * 179.97438 * 3 2 1 5 5 C 1.47147 * 119.48391 * 179.97438 * 4 3 2 6 6 C 1.40410 * 126.55660 * 180.02562 * 5 4 3 7 7 N 1.30850 * 108.80890 * 180.02562 * 6 5 4 8 8 N 1.40003 * 109.57328 * 359.97438 * 7 6 5 9 9 C 1.36357 * 132.08254 * 179.97438 * 8 7 6 10 10 C 1.35258 * 120.67168 * 179.16887 * 9 8 7 11 11 C 1.40140 * 120.33700 * 0.71759 * 10 9 8 12 12 C 1.36589 * 119.44852 * 359.55571 * 11 10 9 13 13 C 1.36843 * 107.85074 * 359.73277 * 8 7 6 14 14 C 1.40327 * 121.02909 * 359.97438 * 4 3 2 15 15 C 1.36335 * 119.45170 * 0.02562 * 14 4 3 16 16 C 1.40991 * 119.78754 * 179.97438 * 2 1 3 17 17 C 1.40912 * 120.51807 * 0.02562 * 16 2 1 18 18 H 1.08005 * 120.00110 * 25.01490 * 17 16 2 19 19 C 1.39792 * 120.00137 * 205.00615 * 17 16 2 20 20 N 1.30941 * 119.99511 * 14.90362 * 19 17 16 21 21 Si 1.86805 * 119.99955 * 194.90826 * 19 17 16 22 22 H 1.48489 * 109.47155 * 89.99992 * 21 19 17 23 23 H 1.48504 * 109.46560 * 210.00088 * 21 19 17 24 24 H 1.48499 * 109.46879 * 329.99733 * 21 19 17 25 25 H 1.09001 * 109.46688 * 89.99752 * 1 2 3 26 26 H 1.09003 * 109.47221 * 209.99797 * 1 2 3 27 27 H 1.09000 * 109.47343 * 330.00134 * 1 2 3 28 28 H 1.08004 * 125.59085 * 0.02562 * 6 5 4 29 29 H 1.07998 * 119.66016 * 359.97438 * 9 8 7 30 30 H 1.08003 * 119.82873 * 180.26711 * 10 9 8 31 31 H 1.07993 * 120.27354 * 179.57947 * 11 10 9 32 32 H 1.07992 * 120.36706 * 179.97438 * 12 11 10 33 33 H 1.08007 * 120.27445 * 179.97438 * 14 4 3 34 34 H 1.08005 * 120.77433 * 179.97438 * 15 14 4 35 35 H 0.97002 * 119.99896 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1386 0.0000 4 6 3.4911 1.1826 0.0005 5 6 4.1727 2.4868 -0.0001 6 6 5.5596 2.7056 -0.0002 7 7 5.7833 3.9948 -0.0002 8 7 4.5638 4.6824 -0.0007 9 6 4.2648 6.0128 -0.0005 10 6 2.9786 6.4310 -0.0181 11 6 1.9315 5.4996 -0.0216 12 6 2.2202 4.1646 -0.0164 13 6 3.5586 3.7539 -0.0071 14 6 4.2538 0.0047 0.0016 15 6 3.6216 -1.2032 0.0016 16 6 2.2074 -1.2236 0.0005 17 6 1.5094 -2.4477 0.0006 18 1 0.5057 -2.4970 -0.3953 19 6 2.1160 -3.5983 0.5128 20 7 3.1943 -3.4974 1.2488 21 14 1.3883 -5.2795 0.1472 22 1 1.9890 -5.8184 -1.0993 23 1 1.6790 -6.2005 1.2753 24 1 -0.0815 -5.1559 -0.0248 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 6.3174 1.9360 -0.0002 29 1 5.0633 6.7400 0.0006 30 1 2.7574 7.4881 -0.0220 31 1 0.9049 5.8346 -0.0287 32 1 1.4249 3.4340 -0.0186 33 1 5.3327 0.0546 0.0016 34 1 4.1875 -2.1231 0.0020 35 1 3.6150 -4.2958 1.6046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242963785.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:50 Heat of formation + Delta-G solvation = 106.306342 kcal Electronic energy + Delta-G solvation = -20298.603577 eV Core-core repulsion = 17262.052122 eV Total energy + Delta-G solvation = -3036.551455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.82048 -40.18641 -38.03751 -36.02432 -34.23666 -33.19242 -32.33378 -31.53237 -29.57995 -28.66187 -26.49074 -24.63850 -23.98424 -23.33863 -22.12206 -21.28163 -19.20572 -18.07839 -17.75087 -17.13815 -16.77179 -16.52428 -16.25889 -15.89767 -15.51334 -15.27861 -14.82327 -14.42411 -13.91123 -13.56188 -13.41233 -13.27013 -13.09242 -12.97929 -12.76674 -12.63465 -12.61472 -12.55696 -12.15042 -11.72693 -11.51070 -11.41351 -11.11096 -10.25592 -10.10151 -9.84858 -9.53605 -8.68421 -8.15973 -6.25639 -0.14973 0.16890 0.76577 1.13302 1.40636 1.41378 1.46259 1.54380 1.94104 2.19810 2.54537 2.88851 3.34945 3.78850 3.80484 3.88005 4.00186 4.14935 4.33492 4.44743 4.54378 4.63875 4.69192 4.81045 4.89050 5.03475 5.07509 5.11713 5.18572 5.29718 5.34439 5.45035 5.49707 5.59688 5.62765 5.93314 6.03404 6.06176 6.10474 6.55296 6.63184 6.80015 6.87695 7.80481 8.27147 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033377 B = 0.004311 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.706544 B = 6493.615759 C = 7254.442817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.011 4.011 3 N -0.467 5.467 4 C 0.059 3.941 5 C -0.202 4.202 6 C 0.079 3.921 7 N -0.348 5.348 8 N -0.280 5.280 9 C 0.079 3.921 10 C -0.143 4.143 11 C -0.083 4.083 12 C -0.120 4.120 13 C 0.094 3.906 14 C -0.147 4.147 15 C -0.153 4.153 16 C 0.033 3.967 17 C -0.464 4.464 18 H 0.092 0.908 19 C 0.032 3.968 20 N -0.821 5.821 21 Si 0.987 3.013 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.252 1.252 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.207 0.793 29 H 0.195 0.805 30 H 0.202 0.798 31 H 0.174 0.826 32 H 0.142 0.858 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 12.725 -1.851 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.154 4.154 3 N -0.176 5.176 4 C -0.078 4.078 5 C -0.214 4.214 6 C -0.098 4.098 7 N -0.172 5.172 8 N -0.047 5.047 9 C -0.045 4.045 10 C -0.164 4.164 11 C -0.106 4.106 12 C -0.140 4.140 13 C -0.025 4.025 14 C -0.168 4.168 15 C -0.179 4.179 16 C 0.029 3.971 17 C -0.493 4.493 18 H 0.110 0.890 19 C -0.184 4.184 20 N -0.446 5.446 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.176 1.176 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.223 0.777 29 H 0.212 0.788 30 H 0.219 0.781 31 H 0.191 0.809 32 H 0.159 0.841 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.038 14.186 -1.696 14.325 hybrid contribution 0.150 -2.659 0.055 2.663 sum -0.888 11.528 -1.641 11.678 Atomic orbital electron populations 1.20229 0.88763 1.01700 1.01314 1.21555 0.96882 0.87886 1.09117 1.66890 1.08783 1.29982 1.11961 1.18384 0.88776 0.90259 1.10366 1.18678 0.92248 0.90473 1.20029 1.24088 0.95676 0.93633 0.96367 1.77314 1.00545 1.05899 1.33446 1.46186 1.05436 1.06404 1.46626 1.22309 1.00432 0.80888 1.00899 1.21421 0.89222 1.03098 1.02703 1.21717 1.02213 0.90992 0.95635 1.20970 0.92964 0.98335 1.01683 1.19658 0.90749 0.89418 1.02673 1.21412 0.99618 0.92882 1.02839 1.21341 0.95114 0.96857 1.04554 1.18735 0.92959 0.94314 0.91091 1.19783 1.02087 0.92667 1.34754 0.89017 1.26869 0.94540 1.05237 0.91727 1.69904 1.18242 1.33285 1.23191 0.85118 0.79971 0.75410 0.78797 1.18840 1.19505 1.17553 0.91998 0.91585 0.91943 0.77693 0.78824 0.78145 0.80896 0.84064 0.86262 0.86608 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.56 9.57 71.24 0.68 -1.88 16 2 C -0.01 -0.56 6.86 43.33 0.30 -0.26 16 3 N -0.47 -23.16 8.49 -171.21 -1.45 -24.62 16 4 C 0.06 2.88 6.75 41.77 0.28 3.16 16 5 C -0.20 -8.76 6.15 -19.78 -0.12 -8.88 16 6 C 0.08 2.99 11.35 85.37 0.97 3.96 16 7 N -0.35 -12.71 12.58 -56.65 -0.71 -13.42 16 8 N -0.28 -9.39 3.87 -187.06 -0.72 -10.11 16 9 C 0.08 1.77 11.19 83.30 0.93 2.70 16 10 C -0.14 -2.38 9.98 22.04 0.22 -2.16 16 11 C -0.08 -1.75 10.09 22.35 0.23 -1.53 16 12 C -0.12 -3.90 9.69 22.31 0.22 -3.68 16 13 C 0.09 3.62 6.76 39.42 0.27 3.89 16 14 C -0.15 -7.21 9.54 22.33 0.21 -6.99 16 15 C -0.15 -8.15 8.72 22.61 0.20 -7.96 16 16 C 0.03 1.80 5.59 -21.16 -0.12 1.68 16 17 C -0.46 -23.70 8.14 23.30 0.19 -23.51 16 18 H 0.09 4.39 6.83 -2.91 -0.02 4.37 16 19 C 0.03 1.54 5.21 85.20 0.44 1.98 16 20 N -0.82 -41.61 10.84 21.80 0.24 -41.37 16 21 Si 0.99 36.33 29.58 68.60 2.03 38.36 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 24 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.07 2.67 6.75 -2.39 -0.02 2.65 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.21 6.57 7.28 -2.91 -0.02 6.55 16 29 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 30 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.14 5.09 6.84 -2.91 -0.02 5.07 16 33 H 0.12 5.07 6.99 -2.91 -0.02 5.05 16 34 H 0.12 6.30 6.17 -2.91 -0.02 6.28 16 35 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 Total: -1.00 -68.43 301.89 5.39 -63.04 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 1.13 Total: 27.61 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 4.89 Total: -39.49 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -2.65 Total: -89.52 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -68.43 5.39 -63.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242963785.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.345 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds