Wall clock time and date at job start Tue Mar 31 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34849 * 126.46579 * 2 1 4 4 N 1.30772 * 109.11048 * 179.97438 * 3 2 1 5 5 C 1.33478 * 109.65065 * 359.72922 * 4 3 2 6 6 C 1.36672 * 107.81049 * 0.43481 * 5 4 3 7 7 C 1.47104 * 126.81824 * 179.83549 * 6 5 4 8 8 N 1.31912 * 119.47934 * 294.25315 * 7 6 5 9 9 C 1.33573 * 121.71562 * 179.97438 * 8 7 6 10 10 C 1.40538 * 120.96614 * 180.02562 * 9 8 7 11 11 C 1.36208 * 119.70774 * 179.97438 * 10 9 8 12 12 C 1.39195 * 121.75990 * 359.97438 * 11 10 9 13 13 C 1.36117 * 121.47117 * 0.02562 * 12 11 10 14 14 C 1.40799 * 119.47650 * 359.97438 * 13 12 11 15 15 C 1.39995 * 121.36125 * 180.02562 * 14 13 12 16 16 C 1.40365 * 118.00231 * 179.66172 * 15 14 13 17 17 C 1.40713 * 120.42298 * 180.29731 * 16 15 14 18 18 H 1.08001 * 119.99911 * 151.78309 * 17 16 15 19 19 C 1.40079 * 120.00251 * 331.78179 * 17 16 15 20 20 N 1.30780 * 120.00241 * 161.65559 * 19 17 16 21 21 Si 1.86799 * 119.99818 * 341.65853 * 19 17 16 22 22 H 1.48511 * 109.47072 * 90.06009 * 21 19 17 23 23 H 1.48497 * 109.47150 * 210.05895 * 21 19 17 24 24 H 1.48503 * 109.47244 * 330.06263 * 21 19 17 25 25 H 1.09002 * 109.47093 * 273.02901 * 1 2 3 26 26 H 1.08999 * 109.47062 * 33.03199 * 1 2 3 27 27 H 1.08997 * 109.47161 * 153.03177 * 1 2 3 28 28 H 1.07995 * 125.44099 * 359.97050 * 3 2 1 29 29 H 1.07996 * 126.09300 * 180.28147 * 5 4 3 30 30 H 1.08001 * 120.14508 * 0.02562 * 10 9 8 31 31 H 1.08000 * 119.12466 * 179.97438 * 11 10 9 32 32 H 1.07995 * 119.26756 * 179.97438 * 12 11 10 33 33 H 1.07999 * 120.25993 * 179.97438 * 13 12 11 34 34 H 1.07997 * 121.00119 * 359.97438 * 15 14 13 35 35 H 0.96992 * 119.99784 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2666 1.0845 0.0000 4 7 3.5147 0.6944 0.0006 5 6 3.5682 -0.6393 0.0069 6 6 2.2848 -1.1092 0.0006 7 6 1.8618 -2.5181 0.0007 8 7 2.1327 -3.2773 -1.0434 9 6 1.7701 -4.5620 -1.0905 10 6 2.0674 -5.3567 -2.2108 11 6 1.6860 -6.6641 -2.2314 12 6 1.0039 -7.2452 -1.1661 13 6 0.6855 -6.5311 -0.0519 14 6 1.0525 -5.1743 0.0298 15 6 0.7455 -4.4031 1.1571 16 6 1.1514 -3.0594 1.1668 17 6 0.8749 -2.2396 2.2766 18 1 1.5254 -1.4097 2.5102 19 6 -0.2439 -2.4998 3.0783 20 7 -0.3167 -1.9958 4.2828 21 14 -1.6318 -3.5670 2.4269 22 1 -1.3670 -4.9874 2.7700 23 1 -2.9145 -3.1402 3.0413 24 1 -1.7171 -3.4218 0.9514 25 1 -0.3633 0.0543 1.0262 26 1 -0.3633 0.8616 -0.5602 27 1 -0.3633 -0.9159 -0.4660 28 1 1.9312 2.1110 -0.0005 29 1 4.4656 -1.2400 0.0131 30 1 2.5967 -4.9328 -3.0514 31 1 1.9189 -7.2661 -3.0973 32 1 0.7204 -8.2856 -1.2253 33 1 0.1555 -7.0016 0.7630 34 1 0.2169 -4.8305 1.9963 35 1 -1.0913 -2.1763 4.8380 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243068194.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:52 Heat of formation + Delta-G solvation = 103.737153 kcal Electronic energy + Delta-G solvation = -21013.857177 eV Core-core repulsion = 17977.194313 eV Total energy + Delta-G solvation = -3036.662863 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.35100 -39.15557 -36.19856 -34.33007 -33.41734 -32.36930 -30.70777 -29.82957 -27.87793 -26.50580 -25.60861 -23.46459 -21.99455 -21.01051 -20.64979 -19.90800 -18.31342 -17.00764 -16.54205 -16.19177 -15.37178 -15.02259 -14.75476 -13.98979 -13.77058 -13.62891 -13.23507 -13.04436 -12.91839 -12.71889 -12.44225 -12.31774 -12.20881 -12.17336 -11.44699 -11.21583 -10.87037 -10.77874 -10.47439 -10.19792 -9.83999 -9.51513 -9.27593 -9.03901 -8.53094 -7.94556 -7.61323 -7.43086 -7.38294 -4.86650 1.20966 1.72144 2.57750 2.78655 2.88627 2.93173 3.08593 3.28992 3.60179 3.62186 3.77082 4.41547 4.94265 5.10611 5.14047 5.21399 5.38268 5.48891 5.59208 5.63174 5.76150 5.91218 5.92846 5.97129 6.04648 6.23232 6.36678 6.42213 6.71105 6.73199 6.85152 6.95581 7.02504 7.14453 7.25733 7.34946 7.46631 7.59664 7.73852 7.85541 8.11559 8.25882 8.60776 8.90903 9.54507 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.009056 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.271802 B = 3091.112093 C = 4714.212187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.439 5.439 3 C 0.165 3.835 4 N -0.499 5.499 5 C -0.012 4.012 6 C 0.068 3.932 7 C 0.155 3.845 8 N -0.435 5.435 9 C 0.018 3.982 10 C -0.050 4.050 11 C -0.182 4.182 12 C -0.101 4.101 13 C -0.148 4.148 14 C -0.015 4.015 15 C -0.266 4.266 16 C 0.061 3.939 17 C -0.396 4.396 18 H 0.101 0.899 19 C 0.081 3.919 20 N -0.772 5.772 21 Si 0.916 3.084 22 H -0.262 1.262 23 H -0.287 1.287 24 H -0.245 1.245 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.199 0.801 29 H 0.165 0.835 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 -0.755 -5.097 6.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.120 5.120 3 C -0.116 4.116 4 N -0.217 5.217 5 C -0.162 4.162 6 C -0.048 4.048 7 C -0.005 4.005 8 N -0.142 5.142 9 C -0.103 4.103 10 C -0.069 4.069 11 C -0.202 4.202 12 C -0.119 4.119 13 C -0.167 4.167 14 C -0.017 4.017 15 C -0.290 4.290 16 C 0.055 3.945 17 C -0.423 4.423 18 H 0.119 0.881 19 C -0.143 4.143 20 N -0.392 5.392 21 Si 0.742 3.258 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.169 1.169 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.216 0.784 29 H 0.182 0.818 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.470 0.112 -5.605 6.126 hybrid contribution -1.845 -1.394 0.829 2.456 sum -4.315 -1.281 -4.776 6.563 Atomic orbital electron populations 1.22006 0.76731 1.03620 1.04144 1.45226 1.07458 1.06287 1.53057 1.24640 0.85816 0.93019 1.08093 1.69982 1.19102 1.12436 1.20196 1.22214 0.95220 0.90445 1.08320 1.19031 0.90251 0.85908 1.09655 1.19840 1.01153 0.89352 0.90133 1.67494 1.16270 1.04938 1.25480 1.19272 1.05397 0.90260 0.95396 1.20548 0.97352 0.92999 0.95974 1.20304 1.05130 0.95364 0.99419 1.20546 0.98594 0.98846 0.93938 1.20847 1.03500 0.93824 0.98557 1.19521 0.94811 0.93598 0.93788 1.21137 1.14723 0.93615 0.99558 1.19281 0.91343 0.92248 0.91663 1.19537 1.07517 1.11532 1.03698 0.88114 1.26366 1.00336 0.94262 0.93369 1.69651 1.29255 1.33867 1.06449 0.86227 0.77913 0.79977 0.81687 1.18758 1.21392 1.16855 0.89648 0.90336 0.89967 0.78427 0.81776 0.86485 0.87315 0.87497 0.87026 0.86443 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.58 59.85 0.63 1.81 16 2 N -0.44 -8.00 3.18 -121.83 -0.39 -8.39 16 3 C 0.17 2.81 12.54 -90.32 -1.13 1.68 16 4 N -0.50 -9.83 11.21 -14.33 -0.16 -9.99 16 5 C -0.01 -0.24 11.87 -17.40 -0.21 -0.45 16 6 C 0.07 1.43 5.39 -82.10 -0.44 0.99 16 7 C 0.15 3.53 6.31 -80.74 -0.51 3.02 16 8 N -0.44 -9.97 10.23 -4.94 -0.05 -10.02 16 9 C 0.02 0.39 6.75 -82.94 -0.56 -0.17 16 10 C -0.05 -0.95 9.98 -39.45 -0.39 -1.34 16 11 C -0.18 -3.05 9.90 -39.96 -0.40 -3.44 16 12 C -0.10 -1.70 9.91 -39.99 -0.40 -2.10 16 13 C -0.15 -2.84 9.80 -39.38 -0.39 -3.23 16 14 C -0.01 -0.33 5.87 -104.97 -0.62 -0.95 16 15 C -0.27 -6.15 7.15 -38.12 -0.27 -6.42 16 16 C 0.06 1.43 5.31 -104.66 -0.56 0.88 16 17 C -0.40 -9.42 8.50 -37.96 -0.32 -9.74 16 18 H 0.10 2.60 7.56 -52.49 -0.40 2.20 16 19 C 0.08 1.84 5.42 -17.31 -0.09 1.75 16 20 N -0.77 -17.93 13.93 55.55 0.77 -17.16 16 21 Si 0.92 18.59 24.55 -169.99 -4.17 14.42 16 22 H -0.26 -5.28 6.42 56.52 0.36 -4.92 16 23 H -0.29 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.25 -5.14 7.04 56.52 0.40 -4.75 16 25 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.36 7.84 -51.93 -0.41 0.95 16 28 H 0.20 2.43 8.06 -52.49 -0.42 2.01 16 29 H 0.16 3.19 8.06 -52.49 -0.42 2.77 16 30 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 34 H 0.12 2.67 4.43 -52.49 -0.23 2.44 16 35 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 LS Contribution 301.62 15.07 4.55 4.55 Total: -1.00 -27.68 301.62 -8.69 -36.37 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -3.59 Total: 7.93 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -5.65 Total: -17.71 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.18 Total: -45.56 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.17 Total: 14.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.68 -8.69 -36.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243068194.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.109 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds