Wall clock time and date at job start Tue Mar 31 2020 01:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34849 * 126.46579 * 2 1 4 4 N 1.30772 * 109.11048 * 179.97438 * 3 2 1 5 5 C 1.33478 * 109.65065 * 359.72922 * 4 3 2 6 6 C 1.36672 * 107.81049 * 0.43481 * 5 4 3 7 7 C 1.47104 * 126.81824 * 179.83549 * 6 5 4 8 8 N 1.31912 * 119.47934 * 294.25315 * 7 6 5 9 9 C 1.33573 * 121.71562 * 179.97438 * 8 7 6 10 10 C 1.40538 * 120.96614 * 180.02562 * 9 8 7 11 11 C 1.36208 * 119.70774 * 179.97438 * 10 9 8 12 12 C 1.39195 * 121.75990 * 359.97438 * 11 10 9 13 13 C 1.36117 * 121.47117 * 0.02562 * 12 11 10 14 14 C 1.40799 * 119.47650 * 359.97438 * 13 12 11 15 15 C 1.39995 * 121.36125 * 180.02562 * 14 13 12 16 16 C 1.40365 * 118.00231 * 179.66172 * 15 14 13 17 17 C 1.40713 * 120.42298 * 180.29731 * 16 15 14 18 18 H 1.08001 * 119.99911 * 151.78309 * 17 16 15 19 19 C 1.40079 * 120.00251 * 331.78179 * 17 16 15 20 20 N 1.30780 * 120.00241 * 161.65559 * 19 17 16 21 21 Si 1.86799 * 119.99818 * 341.65853 * 19 17 16 22 22 H 1.48511 * 109.47072 * 90.06009 * 21 19 17 23 23 H 1.48497 * 109.47150 * 210.05895 * 21 19 17 24 24 H 1.48503 * 109.47244 * 330.06263 * 21 19 17 25 25 H 1.09002 * 109.47093 * 273.02901 * 1 2 3 26 26 H 1.08999 * 109.47062 * 33.03199 * 1 2 3 27 27 H 1.08997 * 109.47161 * 153.03177 * 1 2 3 28 28 H 1.07995 * 125.44099 * 359.97050 * 3 2 1 29 29 H 1.07996 * 126.09300 * 180.28147 * 5 4 3 30 30 H 1.08001 * 120.14508 * 0.02562 * 10 9 8 31 31 H 1.08000 * 119.12466 * 179.97438 * 11 10 9 32 32 H 1.07995 * 119.26756 * 179.97438 * 12 11 10 33 33 H 1.07999 * 120.25993 * 179.97438 * 13 12 11 34 34 H 1.07997 * 121.00119 * 359.97438 * 15 14 13 35 35 H 0.96992 * 119.99784 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2666 1.0845 0.0000 4 7 3.5147 0.6944 0.0006 5 6 3.5682 -0.6393 0.0069 6 6 2.2848 -1.1092 0.0006 7 6 1.8618 -2.5181 0.0007 8 7 2.1327 -3.2773 -1.0434 9 6 1.7701 -4.5620 -1.0905 10 6 2.0674 -5.3567 -2.2108 11 6 1.6860 -6.6641 -2.2314 12 6 1.0039 -7.2452 -1.1661 13 6 0.6855 -6.5311 -0.0519 14 6 1.0525 -5.1743 0.0298 15 6 0.7455 -4.4031 1.1571 16 6 1.1514 -3.0594 1.1668 17 6 0.8749 -2.2396 2.2766 18 1 1.5254 -1.4097 2.5102 19 6 -0.2439 -2.4998 3.0783 20 7 -0.3167 -1.9958 4.2828 21 14 -1.6318 -3.5670 2.4269 22 1 -1.3670 -4.9874 2.7700 23 1 -2.9145 -3.1402 3.0413 24 1 -1.7171 -3.4218 0.9514 25 1 -0.3633 0.0543 1.0262 26 1 -0.3633 0.8616 -0.5602 27 1 -0.3633 -0.9159 -0.4660 28 1 1.9312 2.1110 -0.0005 29 1 4.4656 -1.2400 0.0131 30 1 2.5967 -4.9328 -3.0514 31 1 1.9189 -7.2661 -3.0973 32 1 0.7204 -8.2856 -1.2253 33 1 0.1555 -7.0016 0.7630 34 1 0.2169 -4.8305 1.9963 35 1 -1.0913 -2.1763 4.8380 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243068194.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:51 Heat of formation + Delta-G solvation = 89.154433 kcal Electronic energy + Delta-G solvation = -21014.489531 eV Core-core repulsion = 17977.194313 eV Total energy + Delta-G solvation = -3037.295218 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.81479 -40.75445 -37.75750 -36.01988 -34.82585 -34.02962 -32.26771 -31.39243 -29.39784 -27.83168 -27.26523 -25.04273 -23.62877 -22.56544 -22.10779 -21.41275 -19.96575 -18.53210 -18.12274 -17.75237 -16.90264 -16.47062 -16.27307 -15.46048 -15.37176 -15.18582 -14.74468 -14.57208 -14.49313 -14.23550 -13.99413 -13.83589 -13.69213 -13.44172 -13.03169 -12.84703 -12.39475 -12.25391 -12.04020 -11.85505 -11.53753 -11.02833 -10.91339 -10.48621 -10.18550 -9.52652 -9.21523 -9.14183 -8.92177 -6.63210 -0.36744 0.10996 1.09032 1.15190 1.25388 1.29553 1.46483 1.84632 1.98482 2.10199 2.25096 2.75507 3.40341 3.45161 3.84500 3.88234 3.99101 4.05907 4.18151 4.28406 4.41307 4.42179 4.48748 4.54170 4.68747 4.72594 4.82987 4.88245 5.13149 5.18111 5.33897 5.37157 5.47035 5.67910 5.71436 5.74653 5.78365 6.04542 6.11363 6.37535 6.45499 6.49787 7.12067 7.23031 7.89660 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.009056 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.271802 B = 3091.112093 C = 4714.212187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.442 5.442 3 C 0.184 3.816 4 N -0.524 5.524 5 C -0.027 4.027 6 C 0.041 3.959 7 C 0.142 3.858 8 N -0.450 5.450 9 C -0.002 4.002 10 C -0.069 4.069 11 C -0.157 4.157 12 C -0.088 4.088 13 C -0.162 4.162 14 C -0.041 4.041 15 C -0.277 4.277 16 C 0.050 3.950 17 C -0.415 4.415 18 H 0.067 0.933 19 C 0.060 3.940 20 N -0.806 5.806 21 Si 0.960 3.040 22 H -0.259 1.259 23 H -0.267 1.267 24 H -0.260 1.260 25 H 0.076 0.924 26 H 0.127 0.873 27 H 0.063 0.937 28 H 0.249 0.751 29 H 0.163 0.837 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -2.366 -7.042 8.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.123 5.123 3 C -0.097 4.097 4 N -0.243 5.243 5 C -0.177 4.177 6 C -0.076 4.076 7 C -0.016 4.016 8 N -0.157 5.157 9 C -0.123 4.123 10 C -0.088 4.088 11 C -0.177 4.177 12 C -0.105 4.105 13 C -0.181 4.181 14 C -0.043 4.043 15 C -0.301 4.301 16 C 0.044 3.956 17 C -0.443 4.443 18 H 0.085 0.915 19 C -0.161 4.161 20 N -0.428 5.428 21 Si 0.784 3.216 22 H -0.185 1.185 23 H -0.193 1.193 24 H -0.184 1.184 25 H 0.095 0.905 26 H 0.146 0.854 27 H 0.082 0.918 28 H 0.265 0.735 29 H 0.180 0.820 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.170 0.830 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.575 -1.497 -7.539 8.477 hybrid contribution -1.419 -1.075 1.208 2.152 sum -4.995 -2.572 -6.331 8.464 Atomic orbital electron populations 1.22160 0.75113 1.04866 1.04268 1.45429 1.08528 1.05757 1.52616 1.25641 0.84905 0.94493 1.04682 1.69979 1.20782 1.11711 1.21797 1.22316 0.95300 0.91273 1.08778 1.19032 0.90988 0.86176 1.11361 1.20026 1.01330 0.90284 0.89989 1.67546 1.16874 1.05657 1.25612 1.19859 1.05434 0.90440 0.96602 1.20851 0.98367 0.93978 0.95587 1.20871 1.01959 0.94508 1.00379 1.21077 0.96354 1.00698 0.92399 1.21128 1.03983 0.92672 1.00306 1.19844 0.95585 0.95225 0.93637 1.21278 1.14995 0.93687 1.00190 1.19404 0.91786 0.92569 0.91844 1.19224 1.08402 1.11510 1.05138 0.91454 1.26783 1.01189 0.94851 0.93228 1.69652 1.30437 1.35527 1.07201 0.85573 0.76795 0.79002 0.80261 1.18461 1.19346 1.18408 0.90498 0.85449 0.91841 0.73495 0.81979 0.85030 0.82931 0.83012 0.85543 0.86538 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.58 127.77 1.35 3.70 16 2 N -0.44 -16.27 3.18 -539.37 -1.71 -17.98 16 3 C 0.18 6.07 12.54 180.24 2.26 8.33 16 4 N -0.52 -20.79 11.21 -199.24 -2.23 -23.02 16 5 C -0.03 -1.15 11.87 84.08 1.00 -0.16 16 6 C 0.04 1.80 5.39 40.15 0.22 2.01 16 7 C 0.14 6.77 6.31 43.73 0.28 7.05 16 8 N -0.45 -21.14 10.23 -169.53 -1.74 -22.87 16 9 C 0.00 -0.08 6.75 41.58 0.28 0.20 16 10 C -0.07 -2.46 9.98 22.36 0.22 -2.23 16 11 C -0.16 -4.51 9.90 22.03 0.22 -4.29 16 12 C -0.09 -2.52 9.91 22.01 0.22 -2.30 16 13 C -0.16 -5.80 9.80 22.40 0.22 -5.58 16 14 C -0.04 -1.79 5.87 -20.09 -0.12 -1.91 16 15 C -0.28 -13.08 7.15 23.21 0.17 -12.92 16 16 C 0.05 2.45 5.31 -19.89 -0.11 2.34 16 17 C -0.42 -20.90 8.50 23.32 0.20 -20.70 16 18 H 0.07 3.75 7.56 -2.91 -0.02 3.73 16 19 C 0.06 2.86 5.42 85.30 0.46 3.32 16 20 N -0.81 -38.72 13.93 21.85 0.30 -38.41 16 21 Si 0.96 38.70 24.55 68.60 1.68 40.39 16 22 H -0.26 -10.20 6.42 99.48 0.64 -9.56 16 23 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 24 H -0.26 -10.99 7.04 99.48 0.70 -10.29 16 25 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 26 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 2.15 7.84 -2.39 -0.02 2.13 16 28 H 0.25 5.26 8.06 -2.91 -0.02 5.23 16 29 H 0.16 6.73 8.06 -2.91 -0.02 6.71 16 30 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 31 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.12 5.39 4.43 -2.91 -0.01 5.37 16 35 H 0.30 12.96 8.29 -92.71 -0.77 12.19 16 Total: -1.00 -63.49 301.62 4.21 -59.28 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.04 Total: 25.76 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 6.86 Total: -23.14 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -5.38 Total: -102.28 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.68 Total: 40.39 kcal Total: -63.49 4.21 -59.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243068194.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.434 kcal (2) G-P(sol) polarization free energy of solvation -63.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds