Wall clock time and date at job start Tue Mar 31 2020 01:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37785 * 125.60446 * 2 1 4 4 C 1.39060 * 133.16362 * 359.90397 * 3 2 1 5 5 C 1.37809 * 119.82432 * 180.30651 * 4 3 2 6 6 C 1.38909 * 120.65651 * 0.04036 * 5 4 3 7 7 C 1.36479 * 120.60402 * 359.97438 * 6 5 4 8 8 C 1.40167 * 119.81044 * 359.97438 * 7 6 5 9 9 C 1.41488 * 133.36418 * 179.97438 * 8 7 6 10 10 C 1.36329 * 107.72156 * 180.02562 * 9 8 7 11 11 C 1.46929 * 125.43760 * 179.97438 * 10 9 8 12 12 N 1.33288 * 120.57235 * 294.35529 * 11 10 9 13 13 C 1.31762 * 120.01884 * 180.27144 * 12 11 10 14 14 C 1.39155 * 121.25356 * 359.49549 * 13 12 11 15 15 N 1.31468 * 121.18543 * 0.25111 * 14 13 12 16 16 C 1.34146 * 119.87594 * 0.02562 * 15 14 13 17 17 C 1.40534 * 120.59857 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00140 * 172.92037 * 17 16 15 19 19 C 1.40123 * 120.00023 * 352.92658 * 17 16 15 20 20 N 1.30711 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00083 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46863 * 60.00076 * 21 19 17 23 23 H 1.48496 * 109.47248 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47265 * 300.00283 * 21 19 17 25 25 H 1.09005 * 109.46984 * 275.18673 * 1 2 3 26 26 H 1.08997 * 109.47455 * 35.18604 * 1 2 3 27 27 H 1.09002 * 109.47107 * 155.19607 * 1 2 3 28 28 H 1.07993 * 120.08572 * 0.34967 * 4 3 2 29 29 H 1.07999 * 119.67153 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.70521 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.09695 * 180.02562 * 7 6 5 32 32 H 1.08001 * 126.14120 * 0.02562 * 9 8 7 33 33 H 1.07999 * 119.37342 * 179.76790 * 13 12 11 34 34 H 1.07997 * 119.40578 * 180.27951 * 14 13 12 35 35 H 0.96994 * 120.00313 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2671 1.1203 0.0000 4 6 1.9963 2.4842 -0.0017 5 6 3.0354 3.3894 -0.0076 6 6 4.3544 2.9535 -0.0126 7 6 4.6455 1.6201 -0.0114 8 6 3.6059 0.6799 -0.0044 9 6 3.5754 -0.7347 -0.0019 10 6 2.2682 -1.1215 0.0050 11 6 1.7909 -2.5111 0.0091 12 7 2.0132 -3.3073 -1.0365 13 6 1.5757 -4.5501 -1.0234 14 6 0.8877 -5.0618 0.0726 15 7 0.6462 -4.3208 1.1313 16 6 1.0659 -3.0471 1.1653 17 6 0.8156 -2.2412 2.2891 18 1 1.2543 -1.2566 2.3560 19 6 -0.0031 -2.7152 3.3228 20 7 -0.5344 -3.9067 3.2416 21 14 -0.3353 -1.6442 4.8168 22 1 -0.9939 -0.3847 4.3864 23 1 -1.2246 -2.3704 5.7585 24 1 0.9480 -1.3258 5.4928 25 1 -0.3633 0.0929 1.0235 26 1 -0.3634 0.8398 -0.5921 27 1 -0.3633 -0.9329 -0.4311 28 1 0.9743 2.8332 0.0023 29 1 2.8222 4.4481 -0.0085 30 1 5.1568 3.6762 -0.0176 31 1 5.6739 1.2903 -0.0150 32 1 4.4336 -1.3903 -0.0049 33 1 1.7584 -5.1850 -1.8777 34 1 0.5464 -6.0863 0.0533 35 1 -1.1014 -4.2346 3.9570 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243351457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:39 Heat of formation + Delta-G solvation = 83.066283 kcal Electronic energy + Delta-G solvation = -20854.404301 eV Core-core repulsion = 17816.845081 eV Total energy + Delta-G solvation = -3037.559220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.24581 -40.46812 -37.80590 -36.12700 -34.24333 -33.73495 -32.43464 -31.05210 -29.49654 -27.94069 -27.13607 -25.16233 -23.88215 -22.54798 -22.17893 -20.85748 -19.65796 -18.06525 -17.95977 -17.41644 -16.89644 -16.54233 -16.01927 -15.97611 -15.19300 -15.02685 -14.71900 -14.56104 -14.21823 -13.88068 -13.75582 -13.43070 -13.37046 -13.12250 -13.06606 -12.61946 -12.45384 -12.14988 -11.99528 -11.79512 -11.66181 -11.60447 -11.09377 -10.56277 -9.77540 -9.46685 -8.88327 -8.57652 -8.34103 -6.78956 0.14287 0.48004 0.85333 1.01520 1.31775 1.44321 1.46737 1.84576 2.03302 2.07996 2.64983 3.12115 3.63264 3.65470 3.90176 3.93518 4.11145 4.26959 4.29166 4.37513 4.39874 4.53887 4.59434 4.63261 4.72400 4.75679 4.94018 4.96964 5.05131 5.14412 5.18265 5.27298 5.68098 5.70992 5.82039 5.95914 5.98725 6.06666 6.28051 6.37385 6.51987 6.62708 7.24190 7.80067 8.11839 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.007056 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.831713 B = 3967.139354 C = 5180.800997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.472 5.472 3 C 0.066 3.934 4 C -0.133 4.133 5 C -0.105 4.105 6 C -0.145 4.145 7 C -0.091 4.091 8 C -0.120 4.120 9 C -0.223 4.223 10 C 0.177 3.823 11 C -0.046 4.046 12 N -0.418 5.418 13 C -0.128 4.128 14 C 0.091 3.909 15 N -0.490 5.490 16 C 0.201 3.799 17 C -0.401 4.401 18 H 0.087 0.913 19 C 0.027 3.973 20 N -0.728 5.728 21 Si 0.980 3.020 22 H -0.251 1.251 23 H -0.257 1.257 24 H -0.262 1.262 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 10.661 -1.001 10.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.154 5.154 3 C -0.041 4.041 4 C -0.153 4.153 5 C -0.124 4.124 6 C -0.164 4.164 7 C -0.110 4.110 8 C -0.125 4.125 9 C -0.248 4.248 10 C 0.068 3.932 11 C -0.195 4.195 12 N -0.130 5.130 13 C -0.289 4.289 14 C -0.080 4.080 15 N -0.207 5.207 16 C 0.076 3.924 17 C -0.430 4.430 18 H 0.105 0.895 19 C -0.199 4.199 20 N -0.347 5.347 21 Si 0.799 3.201 22 H -0.175 1.175 23 H -0.181 1.181 24 H -0.186 1.186 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.174 0.826 30 H 0.168 0.832 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.470 10.412 -0.888 10.461 hybrid contribution -0.201 -0.641 0.407 0.786 sum 0.269 9.771 -0.481 9.786 Atomic orbital electron populations 1.21869 0.76392 1.03371 1.03396 1.44270 1.06268 1.03733 1.61101 1.18740 0.89893 0.89085 1.06395 1.20324 1.01006 0.88076 1.05898 1.21176 0.91667 0.99909 0.99669 1.20920 0.97543 0.94925 1.03003 1.20607 0.97653 0.92755 0.99954 1.18429 0.93633 0.93086 1.07370 1.20759 0.94771 0.94087 1.15223 1.18092 0.89369 0.84621 1.01155 1.20551 1.12118 0.92435 0.94355 1.67792 1.14328 1.05189 1.25690 1.22952 1.10048 0.93781 1.02143 1.23995 0.93154 1.00564 0.90282 1.69546 1.22015 1.04796 1.24341 1.20689 0.89294 0.90106 0.92282 1.19721 1.22342 1.01092 0.99870 0.89467 1.27053 0.93963 0.96568 1.02346 1.70081 1.17260 1.15875 1.31488 0.85263 0.79641 0.78973 0.76221 1.17458 1.18100 1.18620 0.90919 0.87831 0.92415 0.84719 0.82584 0.83190 0.85165 0.85312 0.82174 0.81989 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.23 10.43 127.77 1.33 4.56 16 2 N -0.47 -19.50 3.08 -526.01 -1.62 -21.12 16 3 C 0.07 2.46 6.82 39.07 0.27 2.73 16 4 C -0.13 -3.84 10.00 22.37 0.22 -3.62 16 5 C -0.11 -2.50 10.02 22.33 0.22 -2.28 16 6 C -0.15 -3.56 9.97 22.02 0.22 -3.34 16 7 C -0.09 -2.81 10.07 22.33 0.22 -2.58 16 8 C -0.12 -4.69 6.16 -21.35 -0.13 -4.82 16 9 C -0.22 -9.95 10.79 22.63 0.24 -9.70 16 10 C 0.18 8.37 5.29 40.01 0.21 8.58 16 11 C -0.05 -2.38 6.02 43.39 0.26 -2.12 16 12 N -0.42 -21.08 10.46 -179.06 -1.87 -22.95 16 13 C -0.13 -5.81 11.17 84.92 0.95 -4.86 16 14 C 0.09 4.19 11.17 84.97 0.95 5.14 16 15 N -0.49 -26.17 8.10 -184.03 -1.49 -27.66 16 16 C 0.20 10.82 6.69 41.54 0.28 11.10 16 17 C -0.40 -20.49 8.33 23.29 0.19 -20.30 16 18 H 0.09 4.42 6.91 -2.91 -0.02 4.40 16 19 C 0.03 1.26 5.50 85.32 0.47 1.73 16 20 N -0.73 -35.83 11.53 21.85 0.25 -35.58 16 21 Si 0.98 35.17 29.56 68.60 2.03 37.19 16 22 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 23 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 24 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 25 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 26 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.06 2.30 7.63 -2.39 -0.02 2.28 16 28 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 31 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.13 5.63 8.06 -2.91 -0.02 5.61 16 33 H 0.16 6.02 8.06 -2.91 -0.02 5.99 16 34 H 0.16 6.19 8.06 -2.91 -0.02 6.17 16 35 H 0.29 12.80 8.29 -92.71 -0.77 12.03 16 Total: -1.00 -65.21 307.98 4.32 -60.89 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 1.11 Total: 29.01 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 5.91 Total: -19.78 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.73 Total: -107.31 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.19 kcal Total: -65.21 4.32 -60.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243351457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.953 kcal (2) G-P(sol) polarization free energy of solvation -65.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds