Wall clock time and date at job start Tue Mar 31 2020 00:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30161 * 124.94124 * 2 1 4 4 C 1.35676 * 109.69184 * 180.24721 * 3 2 1 5 5 C 1.39928 * 133.42552 * 179.76222 * 4 3 2 6 6 C 1.36298 * 120.05183 * 179.97438 * 5 4 3 7 7 C 1.39936 * 120.54530 * 0.02607 * 6 5 4 8 8 C 1.48201 * 119.91656 * 179.97438 * 7 6 5 9 9 C 1.39969 * 119.61342 * 344.08248 * 8 7 6 10 10 C 1.38662 * 119.46245 * 179.97438 * 9 8 7 11 11 C 1.38307 * 118.69832 * 359.97438 * 10 9 8 12 12 C 1.40682 * 119.19656 * 359.97438 * 11 10 9 13 13 C 1.41359 * 119.76784 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99975 * 339.35613 * 13 12 11 15 15 C 1.40006 * 120.00468 * 159.34452 * 13 12 11 16 16 N 1.30757 * 120.00282 * 166.17878 * 15 13 12 17 17 Si 1.86804 * 119.99778 * 346.18808 * 15 13 12 18 18 H 1.48506 * 109.47192 * 87.64767 * 17 15 13 19 19 H 1.48498 * 109.46871 * 207.64750 * 17 15 13 20 20 H 1.48494 * 109.47041 * 327.64687 * 17 15 13 21 21 N 1.32259 * 119.61419 * 163.80268 * 8 7 6 22 22 C 1.39092 * 120.16945 * 0.02562 * 7 6 5 23 23 C 1.38543 * 119.59592 * 359.93678 * 22 7 6 24 24 N 1.35982 * 124.93846 * 179.80324 * 2 1 3 25 25 H 0.97005 * 126.35757 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46936 * 270.19625 * 1 2 3 27 27 H 1.09006 * 109.47251 * 30.19581 * 1 2 3 28 28 H 1.08995 * 109.47387 * 150.19569 * 1 2 3 29 29 H 1.08001 * 119.97268 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.72716 * 180.02562 * 6 5 4 31 31 H 1.08005 * 120.26859 * 0.02562 * 9 8 7 32 32 H 1.08002 * 120.65149 * 180.02562 * 10 9 8 33 33 H 1.08004 * 120.40229 * 180.02562 * 11 10 9 34 34 H 0.97001 * 119.99682 * 180.02562 * 16 15 13 35 35 H 1.08008 * 120.20435 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0670 0.0000 4 6 3.5615 0.7101 -0.0055 5 6 4.7567 1.4376 -0.0122 6 6 5.9531 0.7847 -0.0162 7 6 6.0001 -0.6139 -0.0142 8 6 7.3087 -1.3095 -0.0192 9 6 8.4671 -0.6014 -0.3594 10 6 9.6899 -1.2552 -0.3625 11 6 9.7268 -2.5963 -0.0264 12 6 8.5285 -3.2533 0.3074 13 6 8.5522 -4.6240 0.6523 14 1 9.3844 -5.2426 0.3502 15 6 7.4970 -5.1798 1.3858 16 7 7.3757 -6.4786 1.4751 17 14 6.2624 -4.0656 2.2365 18 1 5.1665 -3.7290 1.2924 19 1 5.6992 -4.7636 3.4201 20 1 6.9399 -2.8185 2.6733 21 7 7.3690 -2.5908 0.3032 22 6 4.8217 -1.3528 -0.0087 23 6 3.6020 -0.6958 -0.0038 24 7 2.2858 -1.1147 0.0038 25 1 1.9747 -2.0335 0.0066 26 1 -0.3633 0.0035 1.0277 27 1 -0.3634 0.8883 -0.5169 28 1 -0.3634 -0.8917 -0.5108 29 1 4.7312 2.5173 -0.0141 30 1 6.8725 1.3514 -0.0209 31 1 8.4092 0.4460 -0.6166 32 1 10.5959 -0.7274 -0.6215 33 1 10.6644 -3.1324 -0.0195 34 1 6.6444 -6.8635 1.9830 35 1 4.8573 -2.4323 -0.0068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243964618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:34 Heat of formation + Delta-G solvation = 84.001093 kcal Electronic energy + Delta-G solvation = -20357.894894 eV Core-core repulsion = 17320.376211 eV Total energy + Delta-G solvation = -3037.518683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.95364 -38.90026 -36.94236 -33.74342 -33.04556 -31.87383 -31.30874 -30.53055 -29.32482 -27.41339 -25.55325 -22.98421 -22.50076 -21.16499 -20.74845 -20.48152 -17.91849 -17.34727 -16.89346 -15.95337 -15.43115 -14.98448 -14.80365 -14.18951 -14.02910 -13.74530 -13.30002 -13.27798 -13.05166 -12.82366 -12.72638 -12.56300 -11.84610 -11.62014 -11.38489 -11.25336 -10.84490 -10.82693 -10.50421 -10.37739 -10.14982 -9.80952 -9.34021 -8.73861 -8.33716 -8.11934 -7.96722 -7.30369 -6.97663 -4.73346 0.99272 1.69093 2.41551 2.56448 2.95914 3.02565 3.30086 3.38632 3.49909 4.11768 4.14155 4.22532 4.55038 4.71214 5.00250 5.07740 5.23537 5.26440 5.50108 5.55240 5.57696 5.65657 5.75892 5.82147 5.91628 6.16474 6.34274 6.41775 6.46780 6.56526 6.71276 6.84623 6.96989 7.06943 7.12367 7.29463 7.41687 7.43978 7.76425 7.97253 8.09101 8.46827 8.54962 9.45769 9.97079 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.006038 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.570641 B = 4636.273636 C = 5930.443063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.272 3.728 3 N -0.496 5.496 4 C 0.045 3.955 5 C -0.076 4.076 6 C -0.104 4.104 7 C -0.011 4.011 8 C 0.197 3.803 9 C -0.287 4.287 10 C -0.051 4.051 11 C -0.250 4.250 12 C 0.251 3.749 13 C -0.420 4.420 14 H 0.097 0.903 15 C 0.090 3.910 16 N -0.801 5.801 17 Si 0.977 3.023 18 H -0.267 1.267 19 H -0.322 1.322 20 H -0.267 1.267 21 N -0.555 5.555 22 C -0.086 4.086 23 C 0.044 3.956 24 N -0.599 5.599 25 H 0.421 0.579 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.287 0.713 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 9.586 -1.901 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.005 3.995 3 N -0.217 5.217 4 C -0.073 4.073 5 C -0.096 4.096 6 C -0.125 4.125 7 C -0.014 4.014 8 C 0.057 3.943 9 C -0.310 4.310 10 C -0.075 4.075 11 C -0.272 4.272 12 C 0.126 3.874 13 C -0.451 4.451 14 H 0.115 0.885 15 C -0.133 4.133 16 N -0.424 5.424 17 Si 0.810 3.190 18 H -0.193 1.193 19 H -0.254 1.254 20 H -0.192 1.192 21 N -0.273 5.273 22 C -0.107 4.107 23 C -0.065 4.065 24 N -0.211 5.211 25 H 0.260 0.740 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.204 9.721 -1.624 14.922 hybrid contribution 0.491 -0.661 0.128 0.833 sum -10.713 9.060 -1.497 14.110 Atomic orbital electron populations 1.20325 0.84473 1.04437 1.04022 1.23522 0.95517 0.81251 0.99230 1.70310 1.01112 1.27576 1.22748 1.19080 0.91833 0.90352 1.06055 1.19810 0.88856 0.99369 1.01576 1.20759 0.97650 0.93249 1.00851 1.18483 0.91301 0.92248 0.99378 1.19293 0.90613 0.90051 0.94357 1.21162 0.92894 0.99833 1.17100 1.20933 0.96396 0.94485 0.95707 1.21780 0.98479 0.94861 1.12074 1.18520 0.86521 0.93105 0.89224 1.19440 1.05584 0.91549 1.28490 0.88463 1.26265 0.97413 0.95502 0.94080 1.69660 1.28900 1.12745 1.31099 0.85053 0.79637 0.78515 0.75801 1.19337 1.25412 1.19189 1.67117 1.28357 1.07896 1.23899 1.20447 0.87918 1.01071 1.01279 1.18840 0.85235 0.95232 1.07188 1.43000 1.05035 1.09740 1.63364 0.74017 0.89586 0.88727 0.90349 0.85406 0.84781 0.87380 0.87570 0.87264 0.90239 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.51 36.01 0.38 -0.18 16 2 C 0.27 3.56 8.08 -154.83 -1.25 2.31 16 3 N -0.50 -8.07 11.27 -8.18 -0.09 -8.16 16 4 C 0.04 0.79 7.23 -84.62 -0.61 0.18 16 5 C -0.08 -1.23 10.03 -39.65 -0.40 -1.62 16 6 C -0.10 -1.74 9.28 -39.64 -0.37 -2.11 16 7 C -0.01 -0.23 5.85 -104.85 -0.61 -0.84 16 8 C 0.20 4.42 6.67 -82.94 -0.55 3.87 16 9 C -0.29 -5.81 9.42 -38.78 -0.37 -6.18 16 10 C -0.05 -1.04 10.15 -39.40 -0.40 -1.44 16 11 C -0.25 -5.68 9.83 -38.63 -0.38 -6.06 16 12 C 0.25 6.42 6.03 -85.01 -0.51 5.91 16 13 C -0.42 -11.32 9.66 -37.73 -0.36 -11.68 16 14 H 0.10 2.66 8.06 -52.48 -0.42 2.24 16 15 C 0.09 2.38 5.51 -17.35 -0.10 2.29 16 16 N -0.80 -21.24 13.92 55.55 0.77 -20.46 16 17 Si 0.98 23.62 25.38 -169.99 -4.31 19.31 16 18 H -0.27 -6.20 5.14 56.52 0.29 -5.91 16 19 H -0.32 -7.58 7.11 56.52 0.40 -7.17 16 20 H -0.27 -6.85 6.91 56.52 0.39 -6.46 16 21 N -0.55 -13.90 4.96 -7.69 -0.04 -13.94 16 22 C -0.09 -1.69 9.57 -39.15 -0.37 -2.07 16 23 C 0.04 0.77 7.29 -84.00 -0.61 0.16 16 24 N -0.60 -8.31 6.23 -8.02 -0.05 -8.36 16 25 H 0.42 4.50 8.96 -40.82 -0.37 4.14 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.13 1.93 6.42 -52.49 -0.34 1.59 16 31 H 0.11 1.85 6.45 -52.48 -0.34 1.51 16 32 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.11 2.30 8.06 -52.48 -0.42 1.88 16 34 H 0.29 6.94 8.29 -40.82 -0.34 6.60 16 35 H 0.14 2.97 5.51 -52.48 -0.29 2.69 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -31.21 298.32 -9.29 -40.50 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.55 Total: 4.08 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -6.52 Total: -17.48 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.59 Total: -50.91 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.31 Total: 19.31 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.21 -9.29 -40.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243964618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.504 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds