Wall clock time and date at job start Tue Mar 31 2020 00:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30161 * 124.94124 * 2 1 4 4 C 1.35676 * 109.69184 * 180.24721 * 3 2 1 5 5 C 1.39928 * 133.42552 * 179.76222 * 4 3 2 6 6 C 1.36298 * 120.05183 * 179.97438 * 5 4 3 7 7 C 1.39936 * 120.54530 * 0.02607 * 6 5 4 8 8 C 1.48201 * 119.91656 * 179.97438 * 7 6 5 9 9 C 1.39969 * 119.61342 * 344.08248 * 8 7 6 10 10 C 1.38662 * 119.46245 * 179.97438 * 9 8 7 11 11 C 1.38307 * 118.69832 * 359.97438 * 10 9 8 12 12 C 1.40682 * 119.19656 * 359.97438 * 11 10 9 13 13 C 1.41359 * 119.76784 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99975 * 339.35613 * 13 12 11 15 15 C 1.40006 * 120.00468 * 159.34452 * 13 12 11 16 16 N 1.30757 * 120.00282 * 166.17878 * 15 13 12 17 17 Si 1.86804 * 119.99778 * 346.18808 * 15 13 12 18 18 H 1.48506 * 109.47192 * 87.64767 * 17 15 13 19 19 H 1.48498 * 109.46871 * 207.64750 * 17 15 13 20 20 H 1.48494 * 109.47041 * 327.64687 * 17 15 13 21 21 N 1.32259 * 119.61419 * 163.80268 * 8 7 6 22 22 C 1.39092 * 120.16945 * 0.02562 * 7 6 5 23 23 C 1.38543 * 119.59592 * 359.93678 * 22 7 6 24 24 N 1.35982 * 124.93846 * 179.80324 * 2 1 3 25 25 H 0.97005 * 126.35757 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46936 * 270.19625 * 1 2 3 27 27 H 1.09006 * 109.47251 * 30.19581 * 1 2 3 28 28 H 1.08995 * 109.47387 * 150.19569 * 1 2 3 29 29 H 1.08001 * 119.97268 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.72716 * 180.02562 * 6 5 4 31 31 H 1.08005 * 120.26859 * 0.02562 * 9 8 7 32 32 H 1.08002 * 120.65149 * 180.02562 * 10 9 8 33 33 H 1.08004 * 120.40229 * 180.02562 * 11 10 9 34 34 H 0.97001 * 119.99682 * 180.02562 * 16 15 13 35 35 H 1.08008 * 120.20435 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0670 0.0000 4 6 3.5615 0.7101 -0.0055 5 6 4.7567 1.4376 -0.0122 6 6 5.9531 0.7847 -0.0162 7 6 6.0001 -0.6139 -0.0142 8 6 7.3087 -1.3095 -0.0192 9 6 8.4671 -0.6014 -0.3594 10 6 9.6899 -1.2552 -0.3625 11 6 9.7268 -2.5963 -0.0264 12 6 8.5285 -3.2533 0.3074 13 6 8.5522 -4.6240 0.6523 14 1 9.3844 -5.2426 0.3502 15 6 7.4970 -5.1798 1.3858 16 7 7.3757 -6.4786 1.4751 17 14 6.2624 -4.0656 2.2365 18 1 5.1665 -3.7290 1.2924 19 1 5.6992 -4.7636 3.4201 20 1 6.9399 -2.8185 2.6733 21 7 7.3690 -2.5908 0.3032 22 6 4.8217 -1.3528 -0.0087 23 6 3.6020 -0.6958 -0.0038 24 7 2.2858 -1.1147 0.0038 25 1 1.9747 -2.0335 0.0066 26 1 -0.3633 0.0035 1.0277 27 1 -0.3634 0.8883 -0.5169 28 1 -0.3634 -0.8917 -0.5108 29 1 4.7312 2.5173 -0.0141 30 1 6.8725 1.3514 -0.0209 31 1 8.4092 0.4460 -0.6166 32 1 10.5959 -0.7274 -0.6215 33 1 10.6644 -3.1324 -0.0195 34 1 6.6444 -6.8635 1.9830 35 1 4.8573 -2.4323 -0.0068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243964618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:33 Heat of formation + Delta-G solvation = 65.162487 kcal Electronic energy + Delta-G solvation = -20358.711798 eV Core-core repulsion = 17320.376211 eV Total energy + Delta-G solvation = -3038.335586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -43.14218 -40.60538 -38.32862 -35.62760 -34.28824 -33.21764 -33.03847 -31.79644 -30.66140 -28.80083 -27.24277 -24.47051 -23.95005 -22.74598 -22.04423 -21.81679 -19.69584 -18.71647 -18.26002 -17.51558 -16.72227 -16.53022 -16.52283 -15.74135 -15.43361 -15.18246 -14.86632 -14.60905 -14.56138 -14.06501 -13.87993 -13.60658 -13.40318 -13.03676 -12.82570 -12.79097 -12.65101 -12.45511 -12.10874 -11.97556 -11.77466 -11.34567 -11.02428 -10.41838 -9.99619 -9.78627 -9.39841 -8.94551 -8.79231 -6.71021 -0.37900 0.36720 0.72680 0.92042 1.33192 1.42768 1.52983 1.77709 1.88032 2.28875 2.53156 2.86780 3.13812 3.46915 3.62862 3.66016 4.08200 4.14563 4.28638 4.35280 4.39161 4.55486 4.58733 4.68269 4.71175 4.73763 4.76347 4.99902 5.06392 5.14025 5.23759 5.38322 5.41473 5.47124 5.60371 5.71180 5.82548 5.98248 6.11060 6.39101 6.57310 6.62368 6.81141 7.64054 8.06464 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.006038 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.570641 B = 4636.273636 C = 5930.443063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.290 3.710 3 N -0.526 5.526 4 C 0.036 3.964 5 C -0.073 4.073 6 C -0.097 4.097 7 C -0.040 4.040 8 C 0.174 3.826 9 C -0.266 4.266 10 C -0.043 4.043 11 C -0.266 4.266 12 C 0.235 3.765 13 C -0.461 4.461 14 H 0.075 0.925 15 C 0.064 3.936 16 N -0.836 5.836 17 Si 1.022 2.978 18 H -0.261 1.261 19 H -0.314 1.314 20 H -0.291 1.291 21 N -0.576 5.576 22 C -0.099 4.099 23 C 0.023 3.977 24 N -0.595 5.595 25 H 0.434 0.566 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.118 0.882 34 H 0.295 0.705 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 13.037 -2.453 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.023 3.977 3 N -0.249 5.249 4 C -0.083 4.083 5 C -0.092 4.092 6 C -0.118 4.118 7 C -0.043 4.043 8 C 0.035 3.965 9 C -0.288 4.288 10 C -0.067 4.067 11 C -0.288 4.288 12 C 0.109 3.891 13 C -0.494 4.494 14 H 0.093 0.907 15 C -0.154 4.154 16 N -0.462 5.462 17 Si 0.854 3.146 18 H -0.187 1.187 19 H -0.245 1.245 20 H -0.218 1.218 21 N -0.294 5.294 22 C -0.121 4.121 23 C -0.086 4.086 24 N -0.208 5.208 25 H 0.275 0.725 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.175 0.825 30 H 0.179 0.821 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.742 13.164 -2.187 18.450 hybrid contribution 0.875 -1.448 0.182 1.701 sum -11.867 11.716 -2.005 16.796 Atomic orbital electron populations 1.20633 0.80323 1.06355 1.05816 1.24625 0.97472 0.80143 0.95421 1.70379 1.00652 1.28824 1.25014 1.19528 0.93044 0.90363 1.05347 1.20155 0.88091 1.00790 1.00191 1.20932 0.99121 0.91685 1.00065 1.18570 0.90153 0.93716 1.01817 1.19910 0.92870 0.89537 0.94180 1.21744 0.91971 1.01644 1.13454 1.21448 0.98299 0.93331 0.93605 1.22009 0.97925 0.96437 1.12441 1.18686 0.87917 0.92976 0.89547 1.19426 1.05918 0.92696 1.31342 0.90654 1.26672 0.98255 0.96168 0.94335 1.69666 1.30258 1.13260 1.33051 0.84406 0.78495 0.76275 0.75400 1.18745 1.24506 1.21804 1.67017 1.28427 1.09586 1.24408 1.20277 0.89307 0.99877 1.02641 1.18843 0.85966 0.95689 1.08108 1.43108 1.03934 1.10940 1.62852 0.72471 0.87624 0.87634 0.87598 0.82456 0.82069 0.83142 0.82888 0.86361 0.89504 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.51 71.24 0.75 -0.06 16 2 C 0.29 6.79 8.08 137.92 1.11 7.90 16 3 N -0.53 -15.81 11.27 -179.79 -2.03 -17.84 16 4 C 0.04 1.18 7.23 39.55 0.29 1.46 16 5 C -0.07 -2.13 10.03 22.23 0.22 -1.90 16 6 C -0.10 -2.98 9.28 22.23 0.21 -2.77 16 7 C -0.04 -1.56 5.85 -20.01 -0.12 -1.68 16 8 C 0.17 7.64 6.67 42.15 0.28 7.92 16 9 C -0.27 -9.90 9.42 22.79 0.21 -9.69 16 10 C -0.04 -1.60 10.15 22.39 0.23 -1.37 16 11 C -0.27 -12.02 9.83 22.88 0.22 -11.79 16 12 C 0.23 12.37 6.03 40.25 0.24 12.61 16 13 C -0.46 -26.36 9.66 23.47 0.23 -26.14 16 14 H 0.08 4.45 8.06 -2.91 -0.02 4.43 16 15 C 0.06 3.57 5.51 85.28 0.47 4.04 16 16 N -0.84 -46.64 13.92 21.83 0.30 -46.34 16 17 Si 1.02 50.77 25.38 68.60 1.74 52.51 16 18 H -0.26 -12.52 5.14 99.48 0.51 -12.01 16 19 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 20 H -0.29 -15.43 6.91 99.48 0.69 -14.75 16 21 N -0.58 -29.40 4.96 -178.23 -0.88 -30.29 16 22 C -0.10 -3.94 9.57 22.55 0.22 -3.73 16 23 C 0.02 0.81 7.29 38.81 0.28 1.09 16 24 N -0.60 -15.49 6.23 -179.28 -1.12 -16.61 16 25 H 0.43 8.62 8.96 -92.70 -0.83 7.79 16 26 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.16 3.90 6.42 -2.91 -0.02 3.88 16 31 H 0.15 4.30 6.45 -2.91 -0.02 4.28 16 32 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 33 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 34 H 0.29 14.88 8.29 -92.71 -0.77 14.11 16 35 H 0.11 5.04 5.51 -2.91 -0.02 5.02 16 Total: -1.00 -71.68 298.32 2.96 -68.72 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.10 Total: 13.96 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.85 Total: -24.11 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -3.72 Total: -111.08 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 1.74 Total: 52.51 kcal Total: -71.68 2.96 -68.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243964618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.878 kcal (2) G-P(sol) polarization free energy of solvation -71.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds