Wall clock time and date at job start Tue Mar 31 2020 00:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30123 * 124.93902 * 2 1 4 4 C 1.35743 * 109.67698 * 180.02562 * 3 2 1 5 5 C 1.39883 * 133.42931 * 179.97438 * 4 3 2 6 6 C 1.36349 * 120.04477 * 180.02562 * 5 4 3 7 7 C 1.39848 * 120.55133 * 359.97438 * 6 5 4 8 8 C 1.48359 * 119.91113 * 179.74213 * 7 6 5 9 9 C 1.39737 * 120.41528 * 179.72372 * 8 7 6 10 10 N 1.31910 * 121.14199 * 179.74965 * 9 8 7 11 11 C 1.31527 * 122.12702 * 0.54268 * 10 9 8 12 12 C 1.40776 * 120.66924 * 359.72898 * 11 10 9 13 13 C 1.41440 * 120.60166 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99686 * 155.57287 * 13 12 11 15 15 C 1.39931 * 120.00173 * 335.57416 * 13 12 11 16 16 N 1.30837 * 119.99739 * 342.35223 * 15 13 12 17 17 Si 1.86788 * 120.00366 * 162.35116 * 15 13 12 18 18 H 1.48502 * 109.47108 * 94.67156 * 17 15 13 19 19 H 1.48497 * 109.47216 * 214.67224 * 17 15 13 20 20 H 1.48498 * 109.47339 * 334.67448 * 17 15 13 21 21 C 1.39175 * 120.40889 * 0.02562 * 8 7 6 22 22 C 1.38990 * 120.18231 * 0.02562 * 7 6 5 23 23 C 1.38608 * 119.59733 * 0.02562 * 22 7 6 24 24 N 1.36022 * 124.94200 * 180.02562 * 2 1 3 25 25 H 0.97005 * 126.36086 * 0.02562 * 24 2 1 26 26 H 1.09005 * 109.46974 * 89.97696 * 1 2 3 27 27 H 1.08993 * 109.46721 * 209.97210 * 1 2 3 28 28 H 1.09001 * 109.47037 * 329.97545 * 1 2 3 29 29 H 1.08005 * 119.98027 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.72241 * 180.02562 * 6 5 4 31 31 H 1.07993 * 119.42786 * 359.97438 * 9 8 7 32 32 H 1.07998 * 119.66334 * 179.70622 * 11 10 9 33 33 H 0.96996 * 120.00300 * 180.02562 * 16 15 13 34 34 H 1.07998 * 120.95384 * 0.02562 * 21 8 7 35 35 H 1.08004 * 120.19933 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2523 1.0667 0.0000 4 6 3.5619 0.7094 -0.0006 5 6 4.7570 1.4363 -0.0013 6 6 5.9536 0.7826 -0.0023 7 6 6.0001 -0.6151 -0.0021 8 6 7.3099 -1.3117 -0.0089 9 6 7.3687 -2.7079 -0.0030 10 7 8.5253 -3.3420 -0.0139 11 6 9.6741 -2.7016 -0.0203 12 6 9.7117 -1.2943 -0.0213 13 6 10.9479 -0.6071 -0.0276 14 1 11.0042 0.3993 -0.4153 15 6 12.0979 -1.2312 0.4684 16 7 11.9906 -2.2824 1.2399 17 14 13.7862 -0.5635 0.0292 18 1 14.2471 0.3589 1.0979 19 1 14.7455 -1.6896 -0.1004 20 1 13.7082 0.1712 -1.2589 21 6 8.4955 -0.5828 -0.0151 22 6 4.8225 -1.3534 -0.0014 23 6 3.6023 -0.6960 -0.0014 24 7 2.2861 -1.1150 -0.0005 25 1 1.9752 -2.0339 -0.0013 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3632 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 4.7320 2.5160 -0.0019 30 1 6.8732 1.3490 -0.0024 31 1 6.4513 -3.2775 0.0071 32 1 10.5979 -3.2610 -0.0244 33 1 12.7877 -2.7149 1.5841 34 1 8.4836 0.4971 -0.0145 35 1 4.8581 -2.4329 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243964717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:46 Heat of formation + Delta-G solvation = 66.630440 kcal Electronic energy + Delta-G solvation = -19734.998472 eV Core-core repulsion = 16696.726541 eV Total energy + Delta-G solvation = -3038.271931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.08753 -40.42282 -38.34540 -35.88556 -34.27123 -33.47312 -32.43910 -31.68757 -30.36045 -27.95282 -27.51727 -24.43744 -23.99295 -22.54997 -22.12608 -21.76559 -19.42514 -18.60507 -18.01939 -17.57666 -16.95803 -16.47518 -16.43391 -15.80821 -15.26091 -14.92729 -14.73094 -14.45668 -14.13138 -13.92330 -13.81998 -13.40841 -13.33843 -13.00442 -12.95395 -12.69193 -12.57120 -12.49845 -12.28208 -11.86423 -11.75990 -11.21629 -11.02328 -10.39783 -9.94416 -9.67968 -9.35152 -8.76095 -8.58613 -6.46561 -0.32145 0.40211 0.87529 1.06941 1.40905 1.51127 1.57485 1.86984 1.93215 2.19372 2.67620 2.94647 3.19025 3.61942 3.72866 3.84427 4.06332 4.18289 4.23925 4.39578 4.44234 4.48017 4.65287 4.74178 4.75505 4.79986 4.97150 5.05548 5.13472 5.18320 5.25267 5.42392 5.47480 5.49403 5.80611 5.84324 5.85917 6.12989 6.35239 6.49054 6.74245 6.76987 6.88748 7.73341 8.24436 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042214 B = 0.003443 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.122829 B = 8131.060687 C = 8708.791592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.287 3.713 3 N -0.533 5.533 4 C 0.022 3.978 5 C -0.073 4.073 6 C -0.119 4.119 7 C -0.022 4.022 8 C -0.069 4.069 9 C -0.038 4.038 10 N -0.492 5.492 11 C 0.015 3.985 12 C 0.039 3.961 13 C -0.480 4.480 14 H 0.088 0.912 15 C 0.035 3.965 16 N -0.820 5.820 17 Si 0.989 3.011 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.256 1.256 21 C -0.191 4.191 22 C -0.105 4.105 23 C 0.040 3.960 24 N -0.588 5.588 25 H 0.439 0.561 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.294 0.706 34 H 0.123 0.877 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 3.025 -1.830 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.020 3.980 3 N -0.255 5.255 4 C -0.096 4.096 5 C -0.092 4.092 6 C -0.139 4.139 7 C -0.024 4.024 8 C -0.071 4.071 9 C -0.193 4.193 10 N -0.199 5.199 11 C -0.147 4.147 12 C 0.035 3.965 13 C -0.509 4.509 14 H 0.106 0.894 15 C -0.181 4.181 16 N -0.446 5.446 17 Si 0.809 3.191 18 H -0.186 1.186 19 H -0.190 1.190 20 H -0.179 1.179 21 C -0.217 4.217 22 C -0.126 4.126 23 C -0.070 4.070 24 N -0.202 5.202 25 H 0.281 0.719 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.152 0.848 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.889 2.814 -1.681 17.204 hybrid contribution 1.284 -0.301 0.061 1.320 sum -15.605 2.513 -1.620 15.889 Atomic orbital electron populations 1.20614 0.80469 1.06241 1.05755 1.24564 0.97400 0.80309 0.95703 1.70360 1.00814 1.29386 1.24942 1.19384 0.92573 0.91175 1.06435 1.20046 0.88628 1.00379 1.00184 1.20870 0.98257 0.93337 1.01419 1.18546 0.91054 0.93248 0.99593 1.19466 0.92175 0.94370 1.01106 1.22332 0.95302 0.90966 1.10746 1.67082 0.99223 1.42454 1.11184 1.22885 0.94266 0.92559 1.05021 1.18778 0.94081 0.93557 0.90108 1.19834 0.92481 1.01993 1.36624 0.89423 1.26884 1.05539 0.94183 0.91495 1.69827 1.33959 1.18489 1.22282 0.85081 0.75139 0.78918 0.79968 1.18562 1.19018 1.17929 1.21695 0.91379 0.99123 1.09482 1.20025 0.88058 1.00088 1.04432 1.18738 0.86233 0.95071 1.06984 1.42980 1.03468 1.10843 1.62921 0.71931 0.87634 0.87315 0.88208 0.83880 0.84580 0.83411 0.84751 0.89528 0.85882 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.51 71.24 0.75 0.10 16 2 C 0.29 5.97 8.08 137.93 1.11 7.08 16 3 N -0.53 -15.57 11.27 -179.81 -2.03 -17.59 16 4 C 0.02 0.71 7.23 39.51 0.29 0.99 16 5 C -0.07 -2.31 10.03 22.23 0.22 -2.08 16 6 C -0.12 -4.06 9.35 22.22 0.21 -3.86 16 7 C -0.02 -0.82 5.88 -20.01 -0.12 -0.94 16 8 C -0.07 -3.09 5.88 -19.99 -0.12 -3.20 16 9 C -0.04 -1.75 10.59 85.04 0.90 -0.85 16 10 N -0.49 -25.74 10.32 -192.75 -1.99 -27.73 16 11 C 0.02 0.83 9.89 85.36 0.84 1.67 16 12 C 0.04 2.10 5.58 -21.22 -0.12 1.98 16 13 C -0.48 -24.94 9.08 23.47 0.21 -24.73 16 14 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 15 C 0.04 1.71 5.15 85.25 0.44 2.15 16 16 N -0.82 -42.04 10.96 21.82 0.24 -41.80 16 17 Si 0.99 36.56 29.59 68.60 2.03 38.59 16 18 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 19 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 20 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 21 C -0.19 -9.26 9.29 23.15 0.22 -9.04 16 22 C -0.11 -3.40 9.45 22.54 0.21 -3.19 16 23 C 0.04 1.17 7.29 38.82 0.28 1.46 16 24 N -0.59 -12.13 6.23 -179.27 -1.12 -13.24 16 25 H 0.44 5.50 8.96 -92.70 -0.83 4.67 16 26 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 30 H 0.14 4.45 6.22 -2.91 -0.02 4.43 16 31 H 0.15 5.77 6.18 -2.91 -0.02 5.75 16 32 H 0.14 7.66 6.15 -2.91 -0.02 7.65 16 33 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 34 H 0.12 5.40 6.28 -2.91 -0.02 5.38 16 35 H 0.14 3.98 6.20 -2.91 -0.02 3.96 16 Total: -1.00 -68.30 301.68 2.80 -65.51 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.33 Total: 28.72 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 5.33 Total: -32.45 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -4.89 Total: -100.37 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -68.30 2.80 -65.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243964717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.140 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds