Wall clock time and date at job start Tue Mar 31 2020 00:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30216 * 124.93223 * 2 1 4 4 C 1.35599 * 109.70863 * 180.27289 * 3 2 1 5 5 C 1.40053 * 133.39728 * 179.74133 * 4 3 2 6 6 C 1.36186 * 120.08099 * 180.02562 * 5 4 3 7 7 C 1.40180 * 120.52283 * 359.96327 * 6 5 4 8 8 C 1.47805 * 119.93827 * 180.02562 * 7 6 5 9 9 C 1.40368 * 120.35034 * 0.02562 * 8 7 6 10 10 C 1.36611 * 118.60308 * 180.02562 * 9 8 7 11 11 C 1.40921 * 119.26468 * 0.02562 * 10 9 8 12 12 C 1.40907 * 119.67446 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00180 * 353.66711 * 12 11 10 14 14 C 1.40077 * 119.99939 * 173.66434 * 12 11 10 15 15 N 1.30733 * 119.99796 * 6.31197 * 14 12 11 16 16 Si 1.86799 * 119.99909 * 186.31270 * 14 12 11 17 17 H 1.48503 * 109.46933 * 94.98440 * 16 14 12 18 18 H 1.48502 * 109.47010 * 214.98229 * 16 14 12 19 19 H 1.48499 * 109.47186 * 334.98528 * 16 14 12 20 20 N 1.33809 * 120.64972 * 359.97438 * 11 10 9 21 21 C 1.31170 * 121.50960 * 359.74086 * 20 11 10 22 22 C 1.39406 * 120.13084 * 0.04131 * 7 6 5 23 23 C 1.38440 * 119.56826 * 359.97438 * 22 7 6 24 24 N 1.35970 * 124.93392 * 179.83907 * 2 1 3 25 25 H 0.96998 * 126.36703 * 359.97438 * 24 2 1 26 26 H 1.08998 * 109.47273 * 270.16904 * 1 2 3 27 27 H 1.09009 * 109.47205 * 30.16093 * 1 2 3 28 28 H 1.08993 * 109.47530 * 150.16330 * 1 2 3 29 29 H 1.08002 * 119.95771 * 359.97438 * 5 4 3 30 30 H 1.08005 * 119.73912 * 179.97438 * 6 5 4 31 31 H 1.07993 * 120.69515 * 0.02913 * 9 8 7 32 32 H 1.07996 * 120.36982 * 179.97438 * 10 9 8 33 33 H 0.96996 * 119.99725 * 180.02562 * 15 14 12 34 34 H 1.08006 * 119.66123 * 180.26729 * 21 20 11 35 35 H 1.07992 * 120.21851 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2526 1.0675 0.0000 4 6 3.5610 0.7115 -0.0061 5 6 4.7566 1.4408 -0.0134 6 6 5.9530 0.7901 -0.0189 7 6 6.0015 -0.6109 -0.0166 8 6 7.3071 -1.3037 -0.0222 9 6 8.5014 -0.5662 -0.0291 10 6 9.6880 -1.2431 -0.0346 11 6 9.6772 -2.6523 -0.0337 12 6 10.8961 -3.3592 -0.0399 13 1 11.8290 -2.8261 -0.1484 14 6 10.8978 -4.7535 0.0949 15 7 9.7678 -5.4108 0.1023 16 14 12.5147 -5.6735 0.2640 17 1 12.8137 -5.8886 1.7026 18 1 12.4111 -6.9866 -0.4218 19 1 13.6047 -4.8767 -0.3543 20 7 8.5209 -3.3256 -0.0270 21 6 7.3658 -2.7042 -0.0160 22 6 4.8208 -1.3519 -0.0095 23 6 3.6021 -0.6952 -0.0042 24 7 2.2855 -1.1147 0.0031 25 1 1.9746 -2.0335 0.0061 26 1 -0.3634 0.0030 1.0276 27 1 -0.3634 0.8886 -0.5164 28 1 -0.3634 -0.8914 -0.5112 29 1 4.7298 2.5204 -0.0154 30 1 6.8717 1.3580 -0.0249 31 1 8.4825 0.5135 -0.0301 32 1 10.6239 -0.7043 -0.0405 33 1 9.7690 -6.3763 0.1959 34 1 6.4505 -3.2775 -0.0065 35 1 4.8565 -2.4313 -0.0082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243964729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:49 Heat of formation + Delta-G solvation = 92.700530 kcal Electronic energy + Delta-G solvation = -19712.084301 eV Core-core repulsion = 16674.942853 eV Total energy + Delta-G solvation = -3037.141447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74242 -38.57411 -36.77366 -33.89121 -32.86252 -31.72928 -30.78519 -30.37508 -29.12982 -27.31875 -25.18344 -22.80525 -22.28077 -21.09496 -20.63300 -20.30557 -17.75378 -17.38462 -16.71330 -15.71294 -15.26433 -15.23251 -14.57119 -14.09191 -13.76694 -13.43483 -13.12226 -13.10050 -12.87169 -12.71042 -12.45424 -12.25258 -12.02278 -11.49790 -11.20132 -11.11894 -10.95408 -10.92222 -10.50190 -10.40507 -10.11141 -9.67865 -9.55223 -8.56980 -8.20261 -7.98031 -7.72568 -7.03597 -6.64209 -4.66653 1.22154 1.90598 2.56575 2.93020 2.96690 2.99152 3.00270 3.11064 3.32835 3.76951 4.30635 4.31259 4.68113 4.85501 5.15681 5.31295 5.39254 5.52213 5.63857 5.74024 5.77134 5.80028 5.87478 5.96568 6.02074 6.33190 6.47426 6.55278 6.65293 6.83011 6.89231 6.91409 7.01016 7.22928 7.29572 7.52234 7.58302 7.69289 7.85649 8.01636 8.16789 8.41129 8.70758 9.90608 10.06468 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039923 B = 0.003408 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.175124 B = 8215.012728 C = 8897.156266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.252 3.748 3 N -0.490 5.490 4 C 0.008 3.992 5 C -0.059 4.059 6 C -0.140 4.140 7 C 0.056 3.944 8 C -0.277 4.277 9 C -0.033 4.033 10 C -0.270 4.270 11 C 0.251 3.749 12 C -0.405 4.405 13 H 0.089 0.911 14 C 0.062 3.938 15 N -0.698 5.698 16 Si 0.913 3.087 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.259 1.259 20 N -0.490 5.490 21 C 0.159 3.841 22 C -0.159 4.159 23 C 0.070 3.930 24 N -0.604 5.604 25 H 0.418 0.582 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.277 0.723 34 H 0.122 0.878 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.783 4.010 0.098 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.014 4.014 3 N -0.212 5.212 4 C -0.109 4.109 5 C -0.078 4.078 6 C -0.160 4.160 7 C 0.054 3.946 8 C -0.282 4.282 9 C -0.056 4.056 10 C -0.293 4.293 11 C 0.128 3.872 12 C -0.434 4.434 13 H 0.107 0.893 14 C -0.165 4.165 15 N -0.318 5.318 16 Si 0.736 3.264 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.182 1.182 20 N -0.201 5.201 21 C -0.011 4.011 22 C -0.180 4.180 23 C -0.038 4.038 24 N -0.217 5.217 25 H 0.256 0.744 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.988 3.767 0.106 11.617 hybrid contribution 0.729 -0.807 0.111 1.093 sum -10.259 2.960 0.217 10.680 Atomic orbital electron populations 1.20251 0.84899 1.04112 1.03659 1.23352 0.95281 0.81397 1.01377 1.70197 1.01417 1.27731 1.21822 1.18924 0.91544 0.90487 1.09935 1.19814 0.89210 0.98983 0.99838 1.20751 0.97083 0.94004 1.04178 1.18554 0.91831 0.91957 0.92296 1.18974 0.90761 0.94509 1.23962 1.20675 0.92191 0.97630 0.95146 1.21440 0.96773 0.95716 1.15353 1.18680 0.92070 0.88493 0.87934 1.19809 0.93201 0.91686 1.38698 0.89279 1.26217 0.98098 0.98412 0.93815 1.70131 1.27051 1.08799 1.25791 0.86214 0.81592 0.79104 0.79472 1.19196 1.19845 1.18239 1.68803 0.96420 1.37048 1.17866 1.22774 0.96551 0.89984 0.91754 1.19847 0.88224 0.99228 1.10740 1.18775 0.84928 0.95157 1.04985 1.42919 1.05114 1.09370 1.64310 0.74441 0.89963 0.89037 0.90654 0.86152 0.85648 0.88058 0.88007 0.91124 0.86099 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.51 36.00 0.38 -0.18 16 2 C 0.25 3.37 8.08 -154.80 -1.25 2.12 16 3 N -0.49 -8.28 11.27 -8.14 -0.09 -8.37 16 4 C 0.01 0.15 7.23 -84.58 -0.61 -0.46 16 5 C -0.06 -1.00 10.03 -39.64 -0.40 -1.40 16 6 C -0.14 -2.46 9.36 -39.59 -0.37 -2.83 16 7 C 0.06 1.09 5.88 -104.82 -0.62 0.48 16 8 C -0.28 -6.05 5.92 -104.46 -0.62 -6.67 16 9 C -0.03 -0.72 9.46 -39.37 -0.37 -1.09 16 10 C -0.27 -6.33 9.76 -39.15 -0.38 -6.71 16 11 C 0.25 6.56 6.54 -84.98 -0.56 6.01 16 12 C -0.40 -10.22 9.11 -37.88 -0.35 -10.57 16 13 H 0.09 2.08 7.86 -52.49 -0.41 1.67 16 14 C 0.06 1.49 5.49 -17.33 -0.10 1.40 16 15 N -0.70 -17.61 11.47 55.55 0.64 -16.97 16 16 Si 0.91 17.44 29.56 -169.99 -5.03 12.41 16 17 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 20 N -0.49 -13.00 7.86 -10.83 -0.09 -13.09 16 21 C 0.16 3.74 10.60 -17.11 -0.18 3.56 16 22 C -0.16 -2.86 9.46 -39.07 -0.37 -3.23 16 23 C 0.07 1.20 7.29 -83.99 -0.61 0.59 16 24 N -0.60 -8.06 6.24 -8.01 -0.05 -8.11 16 25 H 0.42 4.05 8.96 -40.82 -0.37 3.68 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.13 1.98 6.21 -52.48 -0.33 1.66 16 31 H 0.10 1.87 6.27 -52.49 -0.33 1.54 16 32 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.28 6.27 8.29 -40.82 -0.34 5.94 16 34 H 0.12 2.56 6.20 -52.48 -0.33 2.23 16 35 H 0.12 2.03 6.20 -52.49 -0.33 1.71 16 LS Contribution 302.95 15.07 4.57 4.57 Total: -1.00 -30.69 302.95 -9.78 -40.48 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -3.33 Total: 8.07 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -6.40 Total: -18.99 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.41 Total: -46.54 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.69 -9.78 -40.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243964729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.177 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds