Wall clock time and date at job start Tue Mar 31 2020 00:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30216 * 124.93223 * 2 1 4 4 C 1.35599 * 109.70863 * 180.27289 * 3 2 1 5 5 C 1.40053 * 133.39728 * 179.74133 * 4 3 2 6 6 C 1.36186 * 120.08099 * 180.02562 * 5 4 3 7 7 C 1.40180 * 120.52283 * 359.96327 * 6 5 4 8 8 C 1.47805 * 119.93827 * 180.02562 * 7 6 5 9 9 C 1.40368 * 120.35034 * 0.02562 * 8 7 6 10 10 C 1.36611 * 118.60308 * 180.02562 * 9 8 7 11 11 C 1.40921 * 119.26468 * 0.02562 * 10 9 8 12 12 C 1.40907 * 119.67446 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00180 * 353.66711 * 12 11 10 14 14 C 1.40077 * 119.99939 * 173.66434 * 12 11 10 15 15 N 1.30733 * 119.99796 * 6.31197 * 14 12 11 16 16 Si 1.86799 * 119.99909 * 186.31270 * 14 12 11 17 17 H 1.48503 * 109.46933 * 94.98440 * 16 14 12 18 18 H 1.48502 * 109.47010 * 214.98229 * 16 14 12 19 19 H 1.48499 * 109.47186 * 334.98528 * 16 14 12 20 20 N 1.33809 * 120.64972 * 359.97438 * 11 10 9 21 21 C 1.31170 * 121.50960 * 359.74086 * 20 11 10 22 22 C 1.39406 * 120.13084 * 0.04131 * 7 6 5 23 23 C 1.38440 * 119.56826 * 359.97438 * 22 7 6 24 24 N 1.35970 * 124.93392 * 179.83907 * 2 1 3 25 25 H 0.96998 * 126.36703 * 359.97438 * 24 2 1 26 26 H 1.08998 * 109.47273 * 270.16904 * 1 2 3 27 27 H 1.09009 * 109.47205 * 30.16093 * 1 2 3 28 28 H 1.08993 * 109.47530 * 150.16330 * 1 2 3 29 29 H 1.08002 * 119.95771 * 359.97438 * 5 4 3 30 30 H 1.08005 * 119.73912 * 179.97438 * 6 5 4 31 31 H 1.07993 * 120.69515 * 0.02913 * 9 8 7 32 32 H 1.07996 * 120.36982 * 179.97438 * 10 9 8 33 33 H 0.96996 * 119.99725 * 180.02562 * 15 14 12 34 34 H 1.08006 * 119.66123 * 180.26729 * 21 20 11 35 35 H 1.07992 * 120.21851 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2526 1.0675 0.0000 4 6 3.5610 0.7115 -0.0061 5 6 4.7566 1.4408 -0.0134 6 6 5.9530 0.7901 -0.0189 7 6 6.0015 -0.6109 -0.0166 8 6 7.3071 -1.3037 -0.0222 9 6 8.5014 -0.5662 -0.0291 10 6 9.6880 -1.2431 -0.0346 11 6 9.6772 -2.6523 -0.0337 12 6 10.8961 -3.3592 -0.0399 13 1 11.8290 -2.8261 -0.1484 14 6 10.8978 -4.7535 0.0949 15 7 9.7678 -5.4108 0.1023 16 14 12.5147 -5.6735 0.2640 17 1 12.8137 -5.8886 1.7026 18 1 12.4111 -6.9866 -0.4218 19 1 13.6047 -4.8767 -0.3543 20 7 8.5209 -3.3256 -0.0270 21 6 7.3658 -2.7042 -0.0160 22 6 4.8208 -1.3519 -0.0095 23 6 3.6021 -0.6952 -0.0042 24 7 2.2855 -1.1147 0.0031 25 1 1.9746 -2.0335 0.0061 26 1 -0.3634 0.0030 1.0276 27 1 -0.3634 0.8886 -0.5164 28 1 -0.3634 -0.8914 -0.5112 29 1 4.7298 2.5204 -0.0154 30 1 6.8717 1.3580 -0.0249 31 1 8.4825 0.5135 -0.0301 32 1 10.6239 -0.7043 -0.0405 33 1 9.7690 -6.3763 0.1959 34 1 6.4505 -3.2775 -0.0065 35 1 4.8565 -2.4313 -0.0082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243964729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:49 Heat of formation + Delta-G solvation = 75.113857 kcal Electronic energy + Delta-G solvation = -19712.846916 eV Core-core repulsion = 16674.942853 eV Total energy + Delta-G solvation = -3037.904063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.97191 -40.29167 -38.21481 -35.60377 -34.13854 -33.12457 -32.49649 -31.63134 -30.56886 -28.69933 -26.77755 -24.35133 -23.84723 -22.61134 -21.95015 -21.68050 -19.50362 -18.66786 -18.06098 -17.42552 -16.69328 -16.39899 -16.17761 -15.70525 -15.19527 -14.82696 -14.51175 -14.35790 -14.16769 -13.84469 -13.78850 -13.75284 -13.16830 -12.99081 -12.75186 -12.65060 -12.47320 -12.37356 -12.09683 -11.77436 -11.69975 -11.21643 -10.94935 -10.28941 -9.87892 -9.53883 -9.28501 -8.59296 -8.39285 -6.50123 -0.16555 0.51085 0.98679 1.21552 1.40224 1.51229 1.55207 1.94856 2.01539 2.19080 2.72826 3.09032 3.27312 3.71313 3.92735 4.05868 4.09514 4.19395 4.30907 4.43901 4.50418 4.52359 4.68485 4.75397 4.83479 4.91003 4.94511 5.07249 5.12616 5.19280 5.38353 5.44059 5.53833 5.56724 5.75688 5.96599 6.04595 6.08016 6.22980 6.55197 6.63403 6.88115 6.96609 8.10773 8.34216 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039923 B = 0.003408 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.175124 B = 8215.012728 C = 8897.156266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.274 3.726 3 N -0.530 5.530 4 C -0.001 4.001 5 C -0.066 4.066 6 C -0.136 4.136 7 C 0.023 3.977 8 C -0.263 4.263 9 C -0.037 4.037 10 C -0.285 4.285 11 C 0.218 3.782 12 C -0.446 4.446 13 H 0.096 0.904 14 C 0.020 3.980 15 N -0.744 5.744 16 Si 0.992 3.008 17 H -0.263 1.263 18 H -0.267 1.267 19 H -0.252 1.252 20 N -0.523 5.523 21 C 0.133 3.867 22 C -0.148 4.148 23 C 0.050 3.950 24 N -0.593 5.593 25 H 0.435 0.565 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.116 0.884 33 H 0.283 0.717 34 H 0.134 0.866 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 4.882 0.182 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.008 3.992 3 N -0.252 5.252 4 C -0.118 4.118 5 C -0.086 4.086 6 C -0.156 4.156 7 C 0.021 3.979 8 C -0.268 4.268 9 C -0.060 4.060 10 C -0.307 4.307 11 C 0.095 3.905 12 C -0.476 4.476 13 H 0.114 0.886 14 C -0.204 4.204 15 N -0.365 5.365 16 Si 0.811 3.189 17 H -0.188 1.188 18 H -0.191 1.191 19 H -0.175 1.175 20 N -0.236 5.236 21 C -0.034 4.034 22 C -0.170 4.170 23 C -0.060 4.060 24 N -0.207 5.207 25 H 0.277 0.723 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.011 4.633 0.187 13.813 hybrid contribution 0.871 -0.873 0.080 1.236 sum -12.140 3.761 0.267 12.712 Atomic orbital electron populations 1.20559 0.80714 1.06044 1.05541 1.24477 0.97300 0.80411 0.97040 1.70269 1.01038 1.29315 1.24573 1.19366 0.92555 0.91073 1.08805 1.20052 0.88784 1.00127 0.99606 1.20868 0.98096 0.93189 1.03452 1.18522 0.91008 0.92969 0.95437 1.19234 0.92297 0.94034 1.21271 1.21040 0.91413 0.99347 0.94157 1.21644 0.98234 0.95053 1.15805 1.19135 0.92480 0.89972 0.88923 1.20130 0.93357 0.92947 1.41155 0.88577 1.27136 1.01778 0.98764 0.92686 1.70221 1.29428 1.09304 1.27525 0.85051 0.76800 0.77608 0.79430 1.18792 1.19143 1.17490 1.68737 0.97308 1.38405 1.19150 1.23086 0.96414 0.91236 0.92668 1.19938 0.88548 0.99485 1.09018 1.18791 0.86039 0.95181 1.06016 1.42974 1.03759 1.10656 1.63283 0.72308 0.87892 0.88261 0.87589 0.84068 0.84097 0.84697 0.86568 0.90636 0.84849 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.51 71.23 0.75 -0.04 16 2 C 0.27 6.42 8.08 137.91 1.11 7.53 16 3 N -0.53 -16.60 11.27 -179.66 -2.02 -18.63 16 4 C 0.00 -0.03 7.23 39.61 0.29 0.26 16 5 C -0.07 -2.14 10.03 22.23 0.22 -1.91 16 6 C -0.14 -4.57 9.36 22.26 0.21 -4.37 16 7 C 0.02 0.89 5.88 -19.99 -0.12 0.77 16 8 C -0.26 -11.60 5.92 -19.76 -0.12 -11.72 16 9 C -0.04 -1.57 9.46 22.41 0.21 -1.36 16 10 C -0.29 -13.65 9.76 22.55 0.22 -13.43 16 11 C 0.22 11.91 6.54 40.15 0.26 12.17 16 12 C -0.45 -23.49 9.11 23.37 0.21 -23.28 16 13 H 0.10 4.66 7.86 -2.91 -0.02 4.64 16 14 C 0.02 0.97 5.49 85.30 0.47 1.43 16 15 N -0.74 -39.18 11.47 21.85 0.25 -38.93 16 16 Si 0.99 36.57 29.56 68.60 2.03 38.60 16 17 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 18 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 19 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 20 N -0.52 -29.07 7.86 -188.18 -1.48 -30.55 16 21 C 0.13 6.48 10.60 85.26 0.90 7.38 16 22 C -0.15 -5.25 9.46 22.60 0.21 -5.03 16 23 C 0.05 1.61 7.29 38.80 0.28 1.90 16 24 N -0.59 -14.14 6.24 -179.24 -1.12 -15.25 16 25 H 0.44 7.06 8.96 -92.71 -0.83 6.23 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.14 4.17 6.21 -2.91 -0.02 4.15 16 31 H 0.14 4.76 6.27 -2.91 -0.02 4.74 16 32 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 33 H 0.28 13.34 8.29 -92.71 -0.77 12.57 16 34 H 0.13 5.86 6.20 -2.91 -0.02 5.84 16 35 H 0.12 4.16 6.20 -2.91 -0.02 4.15 16 Total: -1.00 -69.50 302.95 3.10 -66.40 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.32 Total: 28.06 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 5.12 Total: -29.70 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -4.37 Total: -103.36 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -69.50 3.10 -66.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243964729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.517 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds