Wall clock time and date at job start Tue Mar 31 2020 00:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30210 * 124.92862 * 2 1 4 4 C 1.35594 * 109.70928 * 180.25677 * 3 2 1 5 5 C 1.40064 * 133.38786 * 179.77422 * 4 3 2 6 6 C 1.36173 * 120.08716 * 179.97438 * 5 4 3 7 7 C 1.40227 * 120.51634 * 359.97438 * 6 5 4 8 8 C 1.47684 * 119.94153 * 180.02562 * 7 6 5 9 9 C 1.39423 * 120.79614 * 129.99928 * 8 7 6 10 10 N 1.31625 * 120.64839 * 180.02562 * 9 8 7 11 11 C 1.32246 * 122.51827 * 359.97438 * 10 9 8 12 12 C 1.36431 * 121.53444 * 359.97438 * 11 10 9 13 13 C 1.41153 * 119.11383 * 359.72393 * 12 11 10 14 14 C 1.40840 * 121.11178 * 180.27492 * 13 12 11 15 15 H 1.08002 * 119.99811 * 154.75042 * 14 13 12 16 16 C 1.40151 * 120.00193 * 334.75105 * 14 13 12 17 17 N 1.30699 * 120.00126 * 344.74581 * 16 14 13 18 18 Si 1.86807 * 120.00059 * 164.74512 * 16 14 13 19 19 H 1.48505 * 109.46831 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47024 * 119.99821 * 18 16 14 21 21 H 1.48496 * 109.47100 * 240.00423 * 18 16 14 22 22 C 1.39455 * 120.11843 * 359.97438 * 7 6 5 23 23 C 1.38417 * 119.57001 * 0.02562 * 22 7 6 24 24 N 1.35967 * 124.93062 * 179.81046 * 2 1 3 25 25 H 0.97000 * 126.37618 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46889 * 270.19120 * 1 2 3 27 27 H 1.08997 * 109.47351 * 30.19260 * 1 2 3 28 28 H 1.09006 * 109.47437 * 150.19567 * 1 2 3 29 29 H 1.07998 * 119.95768 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.74199 * 179.97438 * 6 5 4 31 31 H 1.08002 * 119.67343 * 359.97438 * 9 8 7 32 32 H 1.07996 * 119.23505 * 179.97438 * 11 10 9 33 33 H 1.08000 * 120.44018 * 179.97438 * 12 11 10 34 34 H 0.97000 * 120.00079 * 180.02562 * 17 16 14 35 35 H 1.08007 * 120.21966 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0676 0.0000 4 6 3.5609 0.7116 -0.0057 5 6 4.7565 1.4412 -0.0123 6 6 5.9530 0.7910 -0.0166 7 6 6.0018 -0.6104 -0.0140 8 6 7.3065 -1.3025 -0.0181 9 6 7.5802 -2.3152 0.9002 10 7 8.7442 -2.9297 0.8942 11 6 9.7025 -2.6290 0.0339 12 6 9.5370 -1.6546 -0.9066 13 6 8.3114 -0.9568 -0.9643 14 6 8.0932 0.0528 -1.9217 15 1 7.0877 0.2903 -2.2364 16 6 9.1808 0.7493 -2.4661 17 7 10.3522 0.6856 -1.8899 18 14 8.9563 1.7686 -4.0153 19 1 7.5451 1.6759 -4.4686 20 1 9.2923 3.1863 -3.7281 21 1 9.8528 1.2534 -5.0811 22 6 4.8207 -1.3518 -0.0064 23 6 3.6021 -0.6952 -0.0020 24 7 2.2855 -1.1147 0.0037 25 1 1.9746 -2.0335 0.0064 26 1 -0.3633 0.0034 1.0277 27 1 -0.3634 0.8882 -0.5168 28 1 -0.3634 -0.8918 -0.5108 29 1 4.7294 2.5209 -0.0139 30 1 6.8714 1.3591 -0.0220 31 1 6.8301 -2.5976 1.6241 32 1 10.6378 -3.1672 0.0768 33 1 10.3317 -1.4232 -1.6003 34 1 11.1048 1.1679 -2.2664 35 1 4.8564 -2.4312 -0.0040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243966179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:13 Heat of formation + Delta-G solvation = 83.232173 kcal Electronic energy + Delta-G solvation = -20351.999573 eV Core-core repulsion = 17314.447547 eV Total energy + Delta-G solvation = -3037.552026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67502 -38.62421 -36.62758 -34.27096 -32.83817 -31.81696 -30.49834 -30.17473 -28.86187 -26.77824 -25.86788 -22.47546 -22.13785 -21.28468 -20.58198 -20.20093 -17.72342 -17.19720 -16.66785 -15.62023 -15.20052 -15.02067 -14.51596 -14.29919 -13.84076 -13.46446 -13.11747 -12.98566 -12.86236 -12.74027 -12.51801 -12.26998 -11.69705 -11.51707 -11.33060 -11.21134 -10.96875 -10.81508 -10.37082 -10.25837 -9.90113 -9.61151 -9.54281 -8.27180 -8.08978 -7.88207 -7.78309 -7.20550 -6.91824 -4.69219 1.37738 2.09271 2.59690 2.73442 2.97908 3.04301 3.14118 3.16359 3.24973 3.77537 4.36831 4.47048 4.53650 4.92203 5.22170 5.34849 5.50094 5.53814 5.63258 5.72556 5.80589 5.87944 6.00931 6.02897 6.24456 6.43615 6.65646 6.74463 6.80874 6.92888 6.99892 7.04057 7.27424 7.31225 7.44966 7.49971 7.64593 7.77767 7.99612 8.23709 8.34724 8.59156 8.63306 9.54128 9.90751 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.005735 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.040683 B = 4881.348314 C = 6190.205014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.254 3.746 3 N -0.492 5.492 4 C 0.026 3.974 5 C -0.076 4.076 6 C -0.097 4.097 7 C 0.052 3.948 8 C -0.237 4.237 9 C 0.132 3.868 10 N -0.579 5.579 11 C 0.081 3.919 12 C -0.207 4.207 13 C 0.146 3.854 14 C -0.437 4.437 15 H 0.089 0.911 16 C 0.078 3.922 17 N -0.776 5.776 18 Si 0.909 3.091 19 H -0.256 1.256 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.137 4.137 23 C 0.054 3.946 24 N -0.603 5.603 25 H 0.416 0.584 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.286 0.714 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 -0.670 0.242 11.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.012 4.012 3 N -0.214 5.214 4 C -0.091 4.091 5 C -0.096 4.096 6 C -0.117 4.117 7 C 0.049 3.951 8 C -0.243 4.243 9 C -0.027 4.027 10 N -0.293 5.293 11 C -0.066 4.066 12 C -0.229 4.229 13 C 0.138 3.862 14 C -0.467 4.467 15 H 0.107 0.893 16 C -0.143 4.143 17 N -0.400 5.400 18 Si 0.732 3.268 19 H -0.180 1.180 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.159 4.159 23 C -0.055 4.055 24 N -0.216 5.216 25 H 0.254 0.746 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.402 -0.353 0.833 11.438 hybrid contribution 0.074 -0.149 -1.354 1.364 sum -11.329 -0.501 -0.521 11.352 Atomic orbital electron populations 1.20254 0.84940 1.04105 1.03629 1.23366 0.95267 0.81438 1.01144 1.70222 1.01492 1.27675 1.21996 1.19003 0.91508 0.90448 1.08143 1.19887 0.89136 0.99174 1.01406 1.20989 0.97341 0.94130 0.99225 1.18420 0.91237 0.92216 0.93186 1.19474 0.95876 1.05640 1.03294 1.22108 0.93541 0.91461 0.95561 1.67312 1.02324 1.31616 1.28070 1.21721 0.96337 0.95884 0.92663 1.21924 1.00203 0.98429 1.02343 1.17729 0.89722 0.89804 0.88930 1.19672 0.94591 1.14354 1.18084 0.89319 1.26040 0.94357 0.96331 0.97609 1.69749 1.01624 1.33093 1.35554 0.86222 0.80305 0.79344 0.80907 1.17972 1.19537 1.19467 1.20021 0.88329 0.98907 1.08595 1.18767 0.84861 0.95255 1.06567 1.42910 1.05147 1.09267 1.64304 0.74576 0.89966 0.89018 0.90699 0.86095 0.84579 0.86157 0.86423 0.85550 0.90324 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.51 36.01 0.38 -0.21 16 2 C 0.25 3.54 8.08 -154.81 -1.25 2.29 16 3 N -0.49 -8.75 11.27 -8.13 -0.09 -8.84 16 4 C 0.03 0.50 7.23 -84.57 -0.61 -0.11 16 5 C -0.08 -1.45 10.03 -39.64 -0.40 -1.85 16 6 C -0.10 -1.96 8.00 -39.58 -0.32 -2.28 16 7 C 0.05 1.09 5.00 -104.84 -0.52 0.56 16 8 C -0.24 -5.50 5.53 -104.04 -0.58 -6.07 16 9 C 0.13 2.99 10.70 -17.20 -0.18 2.80 16 10 N -0.58 -13.75 10.32 -13.35 -0.14 -13.88 16 11 C 0.08 1.90 11.08 -18.02 -0.20 1.70 16 12 C -0.21 -5.10 8.72 -39.13 -0.34 -5.44 16 13 C 0.15 3.64 5.59 -106.25 -0.59 3.05 16 14 C -0.44 -10.65 7.29 -37.88 -0.28 -10.92 16 15 H 0.09 2.16 6.72 -52.49 -0.35 1.80 16 16 C 0.08 1.80 5.22 -17.32 -0.09 1.71 16 17 N -0.78 -18.42 10.92 55.56 0.61 -17.82 16 18 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 C -0.14 -2.56 9.55 -39.06 -0.37 -2.94 16 23 C 0.05 0.96 7.29 -83.99 -0.61 0.35 16 24 N -0.60 -8.31 6.24 -8.01 -0.05 -8.36 16 25 H 0.42 4.12 8.96 -40.82 -0.37 3.76 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.14 2.85 7.37 -52.49 -0.39 2.46 16 31 H 0.12 2.41 8.05 -52.49 -0.42 1.99 16 32 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.13 3.15 6.24 -52.49 -0.33 2.82 16 34 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 35 H 0.12 1.99 8.05 -52.48 -0.42 1.57 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -29.31 303.68 -9.62 -38.93 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -3.53 Total: 10.19 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -5.97 Total: -17.36 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.33 Total: -48.90 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.31 -9.62 -38.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243966179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.164 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds