Wall clock time and date at job start Tue Mar 31 2020 00:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30210 * 124.92862 * 2 1 4 4 C 1.35594 * 109.70928 * 180.25677 * 3 2 1 5 5 C 1.40064 * 133.38786 * 179.77422 * 4 3 2 6 6 C 1.36173 * 120.08716 * 179.97438 * 5 4 3 7 7 C 1.40227 * 120.51634 * 359.97438 * 6 5 4 8 8 C 1.47684 * 119.94153 * 180.02562 * 7 6 5 9 9 C 1.39423 * 120.79614 * 129.99928 * 8 7 6 10 10 N 1.31625 * 120.64839 * 180.02562 * 9 8 7 11 11 C 1.32246 * 122.51827 * 359.97438 * 10 9 8 12 12 C 1.36431 * 121.53444 * 359.97438 * 11 10 9 13 13 C 1.41153 * 119.11383 * 359.72393 * 12 11 10 14 14 C 1.40840 * 121.11178 * 180.27492 * 13 12 11 15 15 H 1.08002 * 119.99811 * 154.75042 * 14 13 12 16 16 C 1.40151 * 120.00193 * 334.75105 * 14 13 12 17 17 N 1.30699 * 120.00126 * 344.74581 * 16 14 13 18 18 Si 1.86807 * 120.00059 * 164.74512 * 16 14 13 19 19 H 1.48505 * 109.46831 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47024 * 119.99821 * 18 16 14 21 21 H 1.48496 * 109.47100 * 240.00423 * 18 16 14 22 22 C 1.39455 * 120.11843 * 359.97438 * 7 6 5 23 23 C 1.38417 * 119.57001 * 0.02562 * 22 7 6 24 24 N 1.35967 * 124.93062 * 179.81046 * 2 1 3 25 25 H 0.97000 * 126.37618 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46889 * 270.19120 * 1 2 3 27 27 H 1.08997 * 109.47351 * 30.19260 * 1 2 3 28 28 H 1.09006 * 109.47437 * 150.19567 * 1 2 3 29 29 H 1.07998 * 119.95768 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.74199 * 179.97438 * 6 5 4 31 31 H 1.08002 * 119.67343 * 359.97438 * 9 8 7 32 32 H 1.07996 * 119.23505 * 179.97438 * 11 10 9 33 33 H 1.08000 * 120.44018 * 179.97438 * 12 11 10 34 34 H 0.97000 * 120.00079 * 180.02562 * 17 16 14 35 35 H 1.08007 * 120.21966 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0676 0.0000 4 6 3.5609 0.7116 -0.0057 5 6 4.7565 1.4412 -0.0123 6 6 5.9530 0.7910 -0.0166 7 6 6.0018 -0.6104 -0.0140 8 6 7.3065 -1.3025 -0.0181 9 6 7.5802 -2.3152 0.9002 10 7 8.7442 -2.9297 0.8942 11 6 9.7025 -2.6290 0.0339 12 6 9.5370 -1.6546 -0.9066 13 6 8.3114 -0.9568 -0.9643 14 6 8.0932 0.0528 -1.9217 15 1 7.0877 0.2903 -2.2364 16 6 9.1808 0.7493 -2.4661 17 7 10.3522 0.6856 -1.8899 18 14 8.9563 1.7686 -4.0153 19 1 7.5451 1.6759 -4.4686 20 1 9.2923 3.1863 -3.7281 21 1 9.8528 1.2534 -5.0811 22 6 4.8207 -1.3518 -0.0064 23 6 3.6021 -0.6952 -0.0020 24 7 2.2855 -1.1147 0.0037 25 1 1.9746 -2.0335 0.0064 26 1 -0.3633 0.0034 1.0277 27 1 -0.3634 0.8882 -0.5168 28 1 -0.3634 -0.8918 -0.5108 29 1 4.7294 2.5209 -0.0139 30 1 6.8714 1.3591 -0.0220 31 1 6.8301 -2.5976 1.6241 32 1 10.6378 -3.1672 0.0768 33 1 10.3317 -1.4232 -1.6003 34 1 11.1048 1.1679 -2.2664 35 1 4.8564 -2.4312 -0.0040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243966179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:11 Heat of formation + Delta-G solvation = 66.864761 kcal Electronic energy + Delta-G solvation = -20352.709317 eV Core-core repulsion = 17314.447547 eV Total energy + Delta-G solvation = -3038.261770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.96673 -40.36884 -38.12720 -36.05385 -34.17969 -33.23998 -32.08156 -31.60207 -30.30583 -28.27021 -27.53944 -24.06045 -23.70772 -22.90475 -21.91169 -21.65022 -19.50463 -18.53185 -18.07688 -17.36683 -16.63685 -16.37740 -16.19252 -15.96119 -15.34081 -14.84595 -14.57970 -14.39743 -14.24596 -13.97354 -13.77253 -13.54986 -13.22561 -13.11056 -12.93955 -12.78620 -12.44101 -12.26398 -11.96643 -11.71024 -11.60894 -11.26384 -10.94231 -9.99624 -9.91637 -9.63609 -9.22820 -8.84383 -8.58021 -6.53104 -0.04655 0.57136 0.94464 0.99576 1.37881 1.50973 1.53170 1.88936 2.02702 2.15870 2.74126 2.97121 3.28716 3.68538 3.76749 3.98922 4.17232 4.27686 4.37122 4.46783 4.53102 4.58621 4.72746 4.77056 4.90828 4.98778 5.00824 5.10207 5.20305 5.27379 5.38562 5.50497 5.54889 5.60468 5.80038 5.95131 6.05112 6.19191 6.51504 6.57825 6.77019 6.80850 6.98229 7.71203 8.18814 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.005735 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.040683 B = 4881.348314 C = 6190.205014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.279 3.721 3 N -0.534 5.534 4 C 0.013 3.987 5 C -0.083 4.083 6 C -0.104 4.104 7 C 0.021 3.979 8 C -0.237 4.237 9 C 0.123 3.877 10 N -0.590 5.590 11 C 0.077 3.923 12 C -0.228 4.228 13 C 0.119 3.881 14 C -0.455 4.455 15 H 0.081 0.919 16 C 0.044 3.956 17 N -0.803 5.803 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.262 1.262 21 H -0.261 1.261 22 C -0.123 4.123 23 C 0.043 3.957 24 N -0.589 5.589 25 H 0.437 0.563 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.117 0.883 34 H 0.295 0.705 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 -1.013 -0.049 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.012 3.988 3 N -0.257 5.257 4 C -0.104 4.104 5 C -0.102 4.102 6 C -0.125 4.125 7 C 0.018 3.982 8 C -0.243 4.243 9 C -0.034 4.034 10 N -0.304 5.304 11 C -0.070 4.070 12 C -0.250 4.250 13 C 0.111 3.889 14 C -0.485 4.485 15 H 0.099 0.901 16 C -0.175 4.175 17 N -0.427 5.427 18 Si 0.795 3.205 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.185 1.185 22 C -0.144 4.144 23 C -0.067 4.067 24 N -0.203 5.203 25 H 0.279 0.721 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.185 -0.735 0.562 14.215 hybrid contribution 0.699 -0.056 -1.193 1.384 sum -13.486 -0.791 -0.631 13.524 Atomic orbital electron populations 1.20576 0.80537 1.06077 1.05648 1.24513 0.97327 0.80370 0.96575 1.70274 1.00952 1.29545 1.24892 1.19270 0.92261 0.91255 1.07600 1.19964 0.89009 0.99842 1.01432 1.20789 0.97167 0.94034 1.00463 1.18353 0.91132 0.92491 0.96183 1.19715 0.96582 1.05436 1.02527 1.22499 0.93778 0.91317 0.95838 1.67378 1.02769 1.32101 1.28200 1.22047 0.97215 0.95631 0.92151 1.21920 1.00302 0.99560 1.03232 1.18096 0.90565 0.90468 0.89781 1.19729 0.94735 1.15056 1.18959 0.90115 1.26748 0.93768 0.97017 0.99927 1.69775 1.02377 1.33861 1.36737 0.85249 0.79804 0.78092 0.77330 1.18592 1.18686 1.18499 1.20047 0.88048 0.99433 1.06852 1.18732 0.86165 0.94916 1.06863 1.42917 1.03497 1.10635 1.63259 0.72108 0.87702 0.88413 0.87375 0.84992 0.86446 0.83701 0.84126 0.86501 0.89429 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.51 71.24 0.75 -0.08 16 2 C 0.28 6.82 8.08 137.92 1.11 7.93 16 3 N -0.53 -17.98 11.27 -179.65 -2.02 -20.00 16 4 C 0.01 0.50 7.23 39.62 0.29 0.79 16 5 C -0.08 -3.20 10.03 22.23 0.22 -2.97 16 6 C -0.10 -4.38 8.00 22.27 0.18 -4.21 16 7 C 0.02 0.89 5.00 -20.01 -0.10 0.79 16 8 C -0.24 -11.27 5.53 -19.49 -0.11 -11.37 16 9 C 0.12 5.59 10.70 85.01 0.91 6.50 16 10 N -0.59 -28.09 10.32 -196.15 -2.02 -30.11 16 11 C 0.08 3.67 11.08 84.21 0.93 4.60 16 12 C -0.23 -11.61 8.72 22.56 0.20 -11.41 16 13 C 0.12 6.14 5.59 -20.92 -0.12 6.02 16 14 C -0.46 -23.00 7.29 23.37 0.17 -22.83 16 15 H 0.08 4.10 6.72 -2.91 -0.02 4.08 16 16 C 0.04 2.09 5.22 85.33 0.45 2.53 16 17 N -0.80 -39.08 10.92 21.86 0.24 -38.84 16 18 Si 0.97 36.48 29.59 68.60 2.03 38.51 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 22 C -0.12 -4.50 9.55 22.61 0.22 -4.28 16 23 C 0.04 1.46 7.29 38.80 0.28 1.74 16 24 N -0.59 -14.29 6.24 -179.24 -1.12 -15.41 16 25 H 0.44 6.88 8.96 -92.71 -0.83 6.05 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 30 H 0.12 5.26 7.37 -2.91 -0.02 5.23 16 31 H 0.15 5.70 8.05 -2.91 -0.02 5.67 16 32 H 0.14 5.82 8.06 -2.91 -0.02 5.80 16 33 H 0.12 6.06 6.24 -2.91 -0.02 6.05 16 34 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 35 H 0.13 4.29 8.05 -2.91 -0.02 4.27 16 Total: -1.00 -65.03 303.68 2.79 -62.24 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.31 Total: 29.85 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 5.38 Total: -26.24 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -4.93 Total: -104.36 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Total: -65.03 2.79 -62.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243966179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.106 kcal (2) G-P(sol) polarization free energy of solvation -65.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds