Wall clock time and date at job start Tue Mar 31 2020 00:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30143 * 124.94636 * 2 1 4 4 C 1.35706 * 109.68701 * 180.30658 * 3 2 1 5 5 C 1.39901 * 133.42989 * 179.71985 * 4 3 2 6 6 C 1.36323 * 120.05441 * 179.97438 * 5 4 3 7 7 C 1.39896 * 120.54167 * 359.97438 * 6 5 4 8 8 C 1.48273 * 119.90706 * 180.02562 * 7 6 5 9 9 C 1.38956 * 119.62343 * 5.00442 * 8 7 6 10 10 C 1.40830 * 118.76636 * 180.02562 * 9 8 7 11 11 C 1.41519 * 120.98693 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00310 * 23.19185 * 11 10 9 13 13 C 1.40054 * 119.99711 * 203.19029 * 11 10 9 14 14 N 1.30729 * 119.99865 * 17.29714 * 13 11 10 15 15 Si 1.86798 * 119.99787 * 197.29406 * 13 11 10 16 16 H 1.48500 * 109.47002 * 60.00144 * 15 13 11 17 17 H 1.48504 * 109.46958 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47231 * 300.00351 * 15 13 11 19 19 C 1.41159 * 118.02349 * 359.97438 * 10 9 8 20 20 C 1.37717 * 119.08608 * 0.02562 * 19 10 9 21 21 N 1.31938 * 121.16705 * 359.72027 * 20 19 10 22 22 C 1.39038 * 120.17910 * 0.04933 * 7 6 5 23 23 C 1.38578 * 119.59348 * 359.93155 * 22 7 6 24 24 N 1.36010 * 124.93585 * 179.82219 * 2 1 3 25 25 H 0.97001 * 126.35775 * 359.96839 * 24 2 1 26 26 H 1.08999 * 109.47232 * 270.17733 * 1 2 3 27 27 H 1.09006 * 109.46424 * 30.17381 * 1 2 3 28 28 H 1.08999 * 109.47318 * 150.16945 * 1 2 3 29 29 H 1.08008 * 119.97154 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.72879 * 180.02562 * 6 5 4 31 31 H 1.08007 * 120.61796 * 0.02562 * 9 8 7 32 32 H 0.96999 * 119.99652 * 180.02562 * 14 13 11 33 33 H 1.07999 * 120.45275 * 179.97438 * 19 10 9 34 34 H 1.08004 * 119.41807 * 179.97438 * 20 19 10 35 35 H 1.07997 * 120.20164 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0668 0.0000 4 6 3.5617 0.7096 -0.0068 5 6 4.7569 1.4367 -0.0148 6 6 5.9534 0.7834 -0.0200 7 6 6.0000 -0.6148 -0.0169 8 6 7.3092 -1.3109 -0.0220 9 6 8.4811 -0.5706 0.0755 10 6 9.7145 -1.2502 0.0683 11 6 10.9366 -0.5430 0.1645 12 1 10.9574 0.4413 0.6085 13 6 12.1190 -1.1196 -0.3160 14 7 12.0641 -2.1319 -1.1414 15 14 13.7744 -0.4422 0.2225 16 1 13.8969 -0.5498 1.6985 17 1 14.8616 -1.2218 -0.4221 18 1 13.8808 0.9831 -0.1804 19 6 9.6957 -2.6577 -0.0377 20 6 8.4841 -3.3059 -0.1297 21 7 7.3480 -2.6353 -0.1148 22 6 4.8220 -1.3534 -0.0095 23 6 3.6021 -0.6960 -0.0037 24 7 2.2859 -1.1150 0.0035 25 1 1.9748 -2.0338 0.0067 26 1 -0.3633 0.0032 1.0276 27 1 -0.3632 0.8885 -0.5166 28 1 -0.3634 -0.8915 -0.5112 29 1 4.7317 2.5165 -0.0169 30 1 6.8729 1.3499 -0.0257 31 1 8.4466 0.5060 0.1553 32 1 12.8830 -2.5315 -1.4739 33 1 10.6188 -3.2183 -0.0474 34 1 8.4635 -4.3827 -0.2115 35 1 4.8576 -2.4327 -0.0074 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243969300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:44 Heat of formation + Delta-G solvation = 84.871657 kcal Electronic energy + Delta-G solvation = -19729.314040 eV Core-core repulsion = 16691.833108 eV Total energy + Delta-G solvation = -3037.480933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.89015 -38.64215 -36.80416 -34.18878 -32.96467 -31.71158 -30.86398 -30.15443 -29.11558 -26.78168 -25.90638 -22.81101 -22.38028 -21.10279 -20.73307 -20.38911 -17.89946 -17.23939 -16.60002 -15.69487 -15.38201 -14.86054 -14.69723 -14.03665 -13.85687 -13.56190 -13.47455 -13.21519 -13.00455 -12.73735 -12.61315 -12.47536 -11.67416 -11.48107 -11.38133 -11.17558 -11.15261 -10.87568 -10.47065 -10.36708 -9.93707 -9.75475 -9.46958 -8.39448 -8.12178 -8.06512 -8.03208 -7.06925 -6.89694 -4.65636 1.09875 1.79578 2.60815 2.71295 2.98667 2.99126 3.01021 3.08076 3.29405 3.80909 4.18939 4.23267 4.65403 4.75745 5.08220 5.15336 5.24420 5.33018 5.61106 5.63222 5.63531 5.71260 5.81531 5.97408 6.07638 6.42843 6.58520 6.70172 6.75148 6.79065 6.84952 7.05441 7.12504 7.19354 7.31750 7.41853 7.46355 7.78859 8.01404 8.05281 8.38275 8.66527 8.67727 9.49870 10.00348 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042030 B = 0.003451 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.025778 B = 8111.870902 C = 8694.845129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.266 3.734 3 N -0.494 5.494 4 C 0.038 3.962 5 C -0.074 4.074 6 C -0.109 4.109 7 C 0.007 3.993 8 C 0.152 3.848 9 C -0.248 4.248 10 C 0.126 3.874 11 C -0.455 4.455 12 H 0.083 0.917 13 C 0.078 3.922 14 N -0.784 5.784 15 Si 0.913 3.087 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.263 1.263 19 C -0.209 4.209 20 C 0.087 3.913 21 N -0.565 5.565 22 C -0.090 4.090 23 C 0.046 3.954 24 N -0.601 5.601 25 H 0.419 0.581 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.285 0.715 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.398 1.195 1.572 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.001 4.001 3 N -0.216 5.216 4 C -0.080 4.080 5 C -0.093 4.093 6 C -0.130 4.130 7 C 0.004 3.996 8 C 0.019 3.981 9 C -0.271 4.271 10 C 0.118 3.882 11 C -0.485 4.485 12 H 0.101 0.899 13 C -0.142 4.142 14 N -0.409 5.409 15 Si 0.737 3.263 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.188 1.188 19 C -0.232 4.232 20 C -0.065 4.065 21 N -0.280 5.280 22 C -0.111 4.111 23 C -0.063 4.063 24 N -0.213 5.213 25 H 0.258 0.742 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.277 1.440 1.369 14.415 hybrid contribution 1.860 -0.698 0.152 1.992 sum -12.418 0.742 1.521 12.532 Atomic orbital electron populations 1.20302 0.84629 1.04336 1.03881 1.23477 0.95438 0.81333 0.99831 1.70293 1.01234 1.27638 1.22413 1.19042 0.91711 0.90473 1.06767 1.19834 0.88892 0.99389 1.01226 1.20850 0.97721 0.93627 1.00827 1.18501 0.91433 0.92096 0.97550 1.19014 0.90347 0.89897 0.98877 1.21877 0.92520 0.98789 1.13957 1.17761 0.92118 0.91900 0.86433 1.19589 0.91111 1.03143 1.34704 0.89919 1.25984 1.01765 0.94050 0.92419 1.69754 1.31154 1.19150 1.20851 0.86283 0.79868 0.79967 0.80201 1.18631 1.20179 1.18763 1.22280 0.97968 0.95295 1.07633 1.21938 0.88510 0.98048 0.98040 1.67263 1.30340 1.07806 1.22601 1.20055 0.87670 1.00312 1.03110 1.18856 0.85174 0.95247 1.06994 1.42951 1.05022 1.09522 1.63848 0.74244 0.89717 0.88822 0.90474 0.85536 0.84658 0.87493 0.90432 0.85499 0.86043 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.51 36.01 0.38 -0.14 16 2 C 0.27 3.36 8.08 -154.82 -1.25 2.10 16 3 N -0.49 -8.00 11.27 -8.18 -0.09 -8.10 16 4 C 0.04 0.66 7.23 -84.63 -0.61 0.05 16 5 C -0.07 -1.23 10.03 -39.65 -0.40 -1.63 16 6 C -0.11 -1.95 9.33 -39.65 -0.37 -2.32 16 7 C 0.01 0.14 5.87 -104.85 -0.62 -0.48 16 8 C 0.15 3.52 6.72 -83.05 -0.56 2.97 16 9 C -0.25 -5.96 9.24 -38.34 -0.35 -6.32 16 10 C 0.13 3.26 5.61 -106.56 -0.60 2.66 16 11 C -0.45 -11.54 9.12 -37.65 -0.34 -11.89 16 12 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 13 C 0.08 1.86 5.20 -17.34 -0.09 1.77 16 14 N -0.78 -19.36 10.90 55.55 0.61 -18.75 16 15 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 16 16 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 17 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 19 C -0.21 -5.29 8.80 -38.66 -0.34 -5.63 16 20 C 0.09 2.05 11.15 -17.70 -0.20 1.85 16 21 N -0.57 -13.40 9.39 -9.95 -0.09 -13.49 16 22 C -0.09 -1.65 9.59 -39.16 -0.38 -2.02 16 23 C 0.05 0.77 7.29 -84.00 -0.61 0.15 16 24 N -0.60 -7.63 6.23 -8.01 -0.05 -7.68 16 25 H 0.42 3.79 8.96 -40.82 -0.37 3.42 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 30 H 0.14 2.25 6.16 -52.49 -0.32 1.93 16 31 H 0.11 2.34 6.19 -52.48 -0.32 2.02 16 32 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 33 H 0.13 3.24 6.16 -52.49 -0.32 2.92 16 34 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 35 H 0.13 2.42 7.52 -52.49 -0.39 2.02 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -30.33 304.20 -9.81 -40.14 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -3.40 Total: 9.42 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -6.34 Total: -18.88 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.37 Total: -48.02 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.33 -9.81 -40.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243969300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.014 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds