Wall clock time and date at job start Tue Mar 31 2020 00:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30143 * 124.94636 * 2 1 4 4 C 1.35706 * 109.68701 * 180.30658 * 3 2 1 5 5 C 1.39901 * 133.42989 * 179.71985 * 4 3 2 6 6 C 1.36323 * 120.05441 * 179.97438 * 5 4 3 7 7 C 1.39896 * 120.54167 * 359.97438 * 6 5 4 8 8 C 1.48273 * 119.90706 * 180.02562 * 7 6 5 9 9 C 1.38956 * 119.62343 * 5.00442 * 8 7 6 10 10 C 1.40830 * 118.76636 * 180.02562 * 9 8 7 11 11 C 1.41519 * 120.98693 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00310 * 23.19185 * 11 10 9 13 13 C 1.40054 * 119.99711 * 203.19029 * 11 10 9 14 14 N 1.30729 * 119.99865 * 17.29714 * 13 11 10 15 15 Si 1.86798 * 119.99787 * 197.29406 * 13 11 10 16 16 H 1.48500 * 109.47002 * 60.00144 * 15 13 11 17 17 H 1.48504 * 109.46958 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47231 * 300.00351 * 15 13 11 19 19 C 1.41159 * 118.02349 * 359.97438 * 10 9 8 20 20 C 1.37717 * 119.08608 * 0.02562 * 19 10 9 21 21 N 1.31938 * 121.16705 * 359.72027 * 20 19 10 22 22 C 1.39038 * 120.17910 * 0.04933 * 7 6 5 23 23 C 1.38578 * 119.59348 * 359.93155 * 22 7 6 24 24 N 1.36010 * 124.93585 * 179.82219 * 2 1 3 25 25 H 0.97001 * 126.35775 * 359.96839 * 24 2 1 26 26 H 1.08999 * 109.47232 * 270.17733 * 1 2 3 27 27 H 1.09006 * 109.46424 * 30.17381 * 1 2 3 28 28 H 1.08999 * 109.47318 * 150.16945 * 1 2 3 29 29 H 1.08008 * 119.97154 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.72879 * 180.02562 * 6 5 4 31 31 H 1.08007 * 120.61796 * 0.02562 * 9 8 7 32 32 H 0.96999 * 119.99652 * 180.02562 * 14 13 11 33 33 H 1.07999 * 120.45275 * 179.97438 * 19 10 9 34 34 H 1.08004 * 119.41807 * 179.97438 * 20 19 10 35 35 H 1.07997 * 120.20164 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0668 0.0000 4 6 3.5617 0.7096 -0.0068 5 6 4.7569 1.4367 -0.0148 6 6 5.9534 0.7834 -0.0200 7 6 6.0000 -0.6148 -0.0169 8 6 7.3092 -1.3109 -0.0220 9 6 8.4811 -0.5706 0.0755 10 6 9.7145 -1.2502 0.0683 11 6 10.9366 -0.5430 0.1645 12 1 10.9574 0.4413 0.6085 13 6 12.1190 -1.1196 -0.3160 14 7 12.0641 -2.1319 -1.1414 15 14 13.7744 -0.4422 0.2225 16 1 13.8969 -0.5498 1.6985 17 1 14.8616 -1.2218 -0.4221 18 1 13.8808 0.9831 -0.1804 19 6 9.6957 -2.6577 -0.0377 20 6 8.4841 -3.3059 -0.1297 21 7 7.3480 -2.6353 -0.1148 22 6 4.8220 -1.3534 -0.0095 23 6 3.6021 -0.6960 -0.0037 24 7 2.2859 -1.1150 0.0035 25 1 1.9748 -2.0338 0.0067 26 1 -0.3633 0.0032 1.0276 27 1 -0.3632 0.8885 -0.5166 28 1 -0.3634 -0.8915 -0.5112 29 1 4.7317 2.5165 -0.0169 30 1 6.8729 1.3499 -0.0257 31 1 8.4466 0.5060 0.1553 32 1 12.8830 -2.5315 -1.4739 33 1 10.6188 -3.2183 -0.0474 34 1 8.4635 -4.3827 -0.2115 35 1 4.8576 -2.4327 -0.0074 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243969300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:39 Heat of formation + Delta-G solvation = 67.634092 kcal Electronic energy + Delta-G solvation = -19730.061517 eV Core-core repulsion = 16691.833108 eV Total energy + Delta-G solvation = -3038.228410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -43.07720 -40.37922 -38.23371 -36.00440 -34.18795 -32.94082 -32.69164 -31.48206 -30.44548 -28.24974 -27.62091 -24.36914 -23.85485 -22.67489 -22.10404 -21.73605 -19.53433 -18.49715 -18.04001 -17.42966 -16.49995 -16.46873 -16.30239 -15.78185 -15.30601 -14.99569 -14.81928 -14.54104 -14.26404 -14.10492 -13.77000 -13.48570 -13.22737 -13.02031 -12.94744 -12.69071 -12.52063 -12.42747 -11.98497 -11.75706 -11.70546 -11.24675 -11.01235 -10.02538 -9.93693 -9.92487 -9.33352 -8.75497 -8.59371 -6.57999 -0.27934 0.42147 0.90881 1.06663 1.39107 1.50768 1.55923 1.87135 1.93840 2.17794 2.67743 2.97017 3.19239 3.55361 3.67996 3.76610 4.15660 4.19069 4.31584 4.42296 4.44602 4.60136 4.74183 4.76184 4.86901 4.93959 4.96841 5.08313 5.18570 5.21331 5.27988 5.42424 5.49606 5.52829 5.72210 5.85825 5.90511 6.18241 6.48620 6.49991 6.77786 6.78636 6.88569 7.64583 8.22352 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042030 B = 0.003451 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.025778 B = 8111.870902 C = 8694.845129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.289 3.711 3 N -0.531 5.531 4 C 0.029 3.971 5 C -0.076 4.076 6 C -0.110 4.110 7 C -0.029 4.029 8 C 0.154 3.846 9 C -0.269 4.269 10 C 0.099 3.901 11 C -0.486 4.486 12 H 0.085 0.915 13 C 0.039 3.961 14 N -0.812 5.812 15 Si 0.988 3.012 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.257 1.257 19 C -0.235 4.235 20 C 0.086 3.914 21 N -0.574 5.574 22 C -0.082 4.082 23 C 0.032 3.968 24 N -0.588 5.588 25 H 0.438 0.562 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.293 0.707 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.299 1.593 1.768 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.022 3.978 3 N -0.254 5.254 4 C -0.089 4.089 5 C -0.095 4.095 6 C -0.131 4.131 7 C -0.032 4.032 8 C 0.020 3.980 9 C -0.292 4.292 10 C 0.091 3.909 11 C -0.516 4.516 12 H 0.103 0.897 13 C -0.179 4.179 14 N -0.437 5.437 15 Si 0.808 3.192 16 H -0.184 1.184 17 H -0.190 1.190 18 H -0.181 1.181 19 C -0.258 4.258 20 C -0.067 4.067 21 N -0.289 5.289 22 C -0.104 4.104 23 C -0.078 4.078 24 N -0.202 5.202 25 H 0.280 0.720 26 H 0.124 0.876 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.214 1.805 1.559 16.389 hybrid contribution 2.152 -0.828 0.068 2.307 sum -14.062 0.978 1.627 14.190 Atomic orbital electron populations 1.20620 0.80343 1.06277 1.05797 1.24602 0.97435 0.80256 0.95540 1.70360 1.00689 1.29271 1.25055 1.19402 0.92675 0.90962 1.05865 1.20028 0.88382 1.00461 1.00632 1.20861 0.98507 0.92824 1.00927 1.18454 0.90562 0.93042 1.01130 1.19482 0.91692 0.89854 0.96935 1.22063 0.92482 0.99579 1.15064 1.18162 0.93210 0.92604 0.86878 1.19896 0.92093 1.03743 1.35894 0.89669 1.26871 1.05137 0.94117 0.91770 1.69801 1.32679 1.20013 1.21254 0.85160 0.74960 0.79444 0.79658 1.18366 1.18993 1.18114 1.22267 0.98245 0.95344 1.09939 1.22342 0.88056 0.99389 0.96867 1.67381 1.30124 1.08204 1.23205 1.19978 0.88050 1.00041 1.02290 1.18786 0.86205 0.95196 1.07591 1.42987 1.03490 1.10854 1.62886 0.72049 0.87581 0.88076 0.87343 0.83448 0.84256 0.86326 0.89553 0.86473 0.83390 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.51 71.24 0.75 0.05 16 2 C 0.29 6.35 8.08 137.92 1.11 7.47 16 3 N -0.53 -16.07 11.27 -179.80 -2.03 -18.10 16 4 C 0.03 0.98 7.23 39.53 0.29 1.27 16 5 C -0.08 -2.48 10.03 22.23 0.22 -2.26 16 6 C -0.11 -3.98 9.33 22.22 0.21 -3.77 16 7 C -0.03 -1.20 5.87 -20.01 -0.12 -1.31 16 8 C 0.15 7.33 6.72 41.84 0.28 7.61 16 9 C -0.27 -13.45 9.24 23.08 0.21 -13.24 16 10 C 0.10 5.35 5.61 -21.12 -0.12 5.24 16 11 C -0.49 -25.47 9.12 23.52 0.21 -25.25 16 12 H 0.09 4.24 7.90 -2.91 -0.02 4.22 16 13 C 0.04 1.87 5.20 85.30 0.44 2.32 16 14 N -0.81 -40.93 10.90 21.84 0.24 -40.69 16 15 Si 0.99 36.45 29.59 68.60 2.03 38.48 16 16 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 17 H -0.27 -9.23 7.11 99.48 0.71 -8.53 16 18 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 19 C -0.24 -12.38 8.80 22.86 0.20 -12.18 16 20 C 0.09 4.13 11.15 84.55 0.94 5.08 16 21 N -0.57 -27.81 9.39 -185.39 -1.74 -29.55 16 22 C -0.08 -3.00 9.59 22.54 0.22 -2.79 16 23 C 0.03 1.03 7.29 38.81 0.28 1.31 16 24 N -0.59 -13.36 6.23 -179.27 -1.12 -14.48 16 25 H 0.44 6.52 8.96 -92.71 -0.83 5.69 16 26 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 30 H 0.14 4.76 6.16 -2.91 -0.02 4.74 16 31 H 0.12 5.43 6.19 -2.91 -0.02 5.41 16 32 H 0.29 13.26 8.29 -92.71 -0.77 12.49 16 33 H 0.12 6.26 6.16 -2.91 -0.02 6.25 16 34 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 35 H 0.13 4.73 7.52 -2.91 -0.02 4.71 16 Total: -1.00 -67.65 304.20 2.84 -64.81 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.32 Total: 30.02 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 5.14 Total: -30.48 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -4.65 Total: -102.83 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -67.65 2.84 -64.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243969300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.443 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds