Wall clock time and date at job start Tue Mar 31 2020 00:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31210 * 119.79777 * 2 1 4 4 C 1.33137 * 121.71289 * 179.97438 * 3 2 1 5 5 C 1.47636 * 119.45761 * 180.02562 * 4 3 2 6 6 C 1.39766 * 120.04360 * 185.88246 * 5 4 3 7 7 C 1.36500 * 120.21601 * 179.71444 * 6 5 4 8 8 C 1.39938 * 120.30548 * 0.56045 * 7 6 5 9 9 C 1.43205 * 119.95186 * 179.69058 * 8 7 6 10 10 N 8.87203 * 125.59200 * 0.02562 * 2 1 3 11 11 C 1.39562 * 120.08595 * 359.72393 * 8 7 6 12 12 C 1.38539 * 119.78681 * 359.97438 * 11 8 7 13 13 N 1.39218 * 120.15254 * 179.97438 * 12 11 8 14 14 C 1.40059 * 121.08157 * 0.04555 * 4 3 2 15 15 C 1.36514 * 119.46003 * 359.97438 * 14 4 3 16 16 C 1.41011 * 119.79440 * 180.02562 * 2 1 3 17 17 C 1.40953 * 120.54133 * 0.27431 * 16 2 1 18 18 H 1.07994 * 120.00206 * 331.22688 * 17 16 2 19 19 C 1.40046 * 119.99759 * 151.22781 * 17 16 2 20 20 N 1.30780 * 119.99956 * 348.43973 * 19 17 16 21 21 Si 1.86804 * 120.00201 * 168.43960 * 19 17 16 22 22 H 1.48507 * 109.46679 * 89.99745 * 21 19 17 23 23 H 1.48493 * 109.47062 * 209.99742 * 21 19 17 24 24 H 1.48499 * 109.46924 * 330.00203 * 21 19 17 25 25 H 1.09003 * 109.47633 * 269.97998 * 1 2 3 26 26 H 1.09003 * 109.47185 * 29.97646 * 1 2 3 27 27 H 1.08997 * 109.47141 * 149.97904 * 1 2 3 28 28 H 1.08001 * 119.89219 * 0.02562 * 6 5 4 29 29 H 1.08003 * 119.84737 * 180.28303 * 7 6 5 30 30 H 1.08009 * 120.10785 * 180.02562 * 11 8 7 31 31 H 0.97000 * 119.99821 * 207.41971 * 13 12 11 32 32 H 0.97003 * 120.00455 * 27.42212 * 13 12 11 33 33 H 1.07994 * 120.26868 * 180.02562 * 14 4 3 34 34 H 1.08000 * 120.78885 * 179.97438 * 15 14 4 35 35 H 0.97004 * 120.00135 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1386 0.0000 4 6 3.4896 1.1831 0.0005 5 6 4.1723 2.4922 0.0011 6 6 5.5630 2.5561 -0.1224 7 6 6.1973 3.7648 -0.1282 8 6 5.4623 4.9486 0.0011 9 6 6.1362 6.2122 0.0008 10 7 6.6706 7.2146 0.0032 11 6 4.0736 4.8992 0.1311 12 6 3.4255 3.6748 0.1312 13 7 2.0406 3.6167 0.2609 14 6 4.2524 0.0084 0.0001 15 6 3.6211 -1.2020 -0.0003 16 6 2.2076 -1.2237 -0.0005 17 6 1.5100 -2.4485 -0.0069 18 1 0.5286 -2.5133 0.4390 19 6 2.0897 -3.5814 -0.5915 20 7 3.1655 -3.4607 -1.3252 21 14 1.3263 -5.2651 -0.3232 22 1 0.3279 -5.5315 -1.3898 23 1 2.3877 -6.3027 -0.3684 24 1 0.6564 -5.2994 1.0016 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 6.1373 1.6465 -0.2186 29 1 7.2718 3.8075 -0.2285 30 1 3.5060 5.8127 0.2305 31 1 1.6225 2.8329 0.6503 32 1 1.4938 4.3600 -0.0382 33 1 5.3311 0.0598 0.0009 34 1 4.1881 -2.1212 -0.0010 35 1 3.5669 -4.2453 -1.7305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244085265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:20 Heat of formation + Delta-G solvation = 66.195491 kcal Electronic energy + Delta-G solvation = -20011.673773 eV Core-core repulsion = 16973.382981 eV Total energy + Delta-G solvation = -3038.290792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95519 -39.70627 -37.57394 -36.00579 -35.17594 -33.99860 -32.55530 -31.49179 -29.53902 -28.69055 -27.07341 -24.74058 -23.44230 -22.46913 -21.73633 -19.66234 -19.25489 -17.69942 -17.60402 -16.96707 -16.32948 -16.09194 -15.72703 -15.29395 -14.98980 -14.82098 -14.76672 -14.56894 -14.10548 -13.78651 -13.58859 -13.52649 -13.34444 -13.30086 -12.89580 -12.73367 -12.59380 -12.54375 -12.15735 -12.06403 -11.53937 -11.22644 -11.12845 -10.21389 -9.99584 -9.83785 -9.10247 -8.67856 -8.20023 -6.33121 -0.30295 0.76728 0.88165 1.12584 1.42237 1.50573 1.55940 1.67553 2.11526 2.19195 2.73798 2.92407 3.15659 3.48115 3.72508 3.80648 4.01890 4.30894 4.42019 4.50782 4.62971 4.71935 4.92226 4.94490 5.04867 5.06388 5.11428 5.20923 5.30952 5.33362 5.50729 5.57691 5.63913 5.83567 5.93434 6.07288 6.10486 6.50709 6.52370 6.76039 6.82307 7.00273 7.40231 7.71312 8.24235 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.003921 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.772436 B = 7139.549371 C = 7847.503481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.007 4.007 3 N -0.451 5.451 4 C 0.010 3.990 5 C -0.058 4.058 6 C -0.090 4.090 7 C -0.109 4.109 8 C -0.015 4.015 9 C 0.289 3.711 10 N -0.470 5.470 11 C -0.138 4.138 12 C 0.212 3.788 13 N -0.864 5.864 14 C -0.137 4.137 15 C -0.154 4.154 16 C 0.042 3.958 17 C -0.460 4.460 18 H 0.093 0.907 19 C 0.033 3.967 20 N -0.817 5.817 21 Si 0.984 3.016 22 H -0.263 1.263 23 H -0.270 1.270 24 H -0.255 1.255 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.409 0.591 32 H 0.396 0.604 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 4.371 1.942 4.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.151 4.151 3 N -0.160 5.160 4 C -0.125 4.125 5 C -0.064 4.064 6 C -0.110 4.110 7 C -0.131 4.131 8 C -0.020 4.020 9 C -0.025 4.025 10 N -0.147 5.147 11 C -0.163 4.163 12 C 0.104 3.896 13 N -0.411 5.411 14 C -0.157 4.157 15 C -0.179 4.179 16 C 0.037 3.963 17 C -0.489 4.489 18 H 0.111 0.889 19 C -0.184 4.184 20 N -0.441 5.441 21 Si 0.805 3.195 22 H -0.187 1.187 23 H -0.195 1.195 24 H -0.178 1.178 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.248 0.752 32 H 0.225 0.775 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.019 6.530 1.811 6.777 hybrid contribution -0.147 -2.152 -0.151 2.163 sum -0.165 4.378 1.660 4.685 Atomic orbital electron populations 1.20270 0.88748 1.01874 1.01541 1.21568 0.96824 0.87942 1.08792 1.66436 1.08795 1.29206 1.11604 1.19252 0.89052 0.91906 1.12245 1.18743 0.93597 0.90398 1.03647 1.20773 0.92227 0.98600 0.99398 1.20633 1.00556 0.89712 1.02245 1.15733 0.92048 0.86082 1.08122 1.25818 0.92190 0.92439 0.92007 1.81220 1.10087 1.12141 1.11229 1.20734 0.92389 0.96988 1.06237 1.17658 0.85897 0.91682 0.94388 1.42928 1.02608 1.24953 1.70635 1.21577 1.00170 0.92836 1.01075 1.21376 0.95055 0.97049 1.04447 1.18747 0.93006 0.94269 0.90230 1.19868 1.03743 0.93406 1.31839 0.88935 1.26857 0.94570 1.04933 0.91993 1.69800 1.18433 1.33897 1.22018 0.85146 0.78745 0.75490 0.80135 1.18725 1.19481 1.17845 0.91700 0.91763 0.91713 0.84328 0.83348 0.83787 0.75236 0.77536 0.85441 0.86906 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.43 9.59 71.23 0.68 -1.74 16 2 C -0.01 -0.32 6.86 43.33 0.30 -0.02 16 3 N -0.45 -18.99 6.62 -171.06 -1.13 -20.12 16 4 C 0.01 0.41 6.71 41.87 0.28 0.69 16 5 C -0.06 -1.97 5.90 -19.88 -0.12 -2.09 16 6 C -0.09 -2.55 9.34 22.23 0.21 -2.34 16 7 C -0.11 -2.60 9.68 22.28 0.22 -2.39 16 8 C -0.02 -0.38 5.74 -21.30 -0.12 -0.50 16 9 C 0.29 7.49 15.31 88.33 1.35 8.84 16 10 N -0.47 -13.85 18.54 19.00 0.35 -13.50 16 11 C -0.14 -3.47 9.64 22.66 0.22 -3.25 16 12 C 0.21 6.41 6.75 38.59 0.26 6.67 16 13 N -0.86 -24.83 8.33 -50.91 -0.42 -25.26 16 14 C -0.14 -5.81 9.37 22.31 0.21 -5.61 16 15 C -0.15 -7.39 8.69 22.64 0.20 -7.20 16 16 C 0.04 2.04 5.56 -21.17 -0.12 1.93 16 17 C -0.46 -21.69 8.06 23.37 0.19 -21.50 16 18 H 0.09 4.09 6.98 -2.91 -0.02 4.07 16 19 C 0.03 1.48 5.26 85.29 0.45 1.93 16 20 N -0.82 -38.69 10.90 21.84 0.24 -38.45 16 21 Si 0.98 34.02 29.58 68.60 2.03 36.05 16 22 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 23 H -0.27 -9.07 7.11 99.48 0.71 -8.36 16 24 H -0.25 -8.57 7.11 99.48 0.71 -7.87 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 2.37 6.81 -2.39 -0.02 2.35 16 28 H 0.14 3.60 6.17 -2.91 -0.02 3.58 16 29 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 30 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.41 13.35 5.95 -92.71 -0.55 12.80 16 32 H 0.40 8.95 8.92 -92.71 -0.83 8.12 16 33 H 0.13 4.61 6.18 -2.91 -0.02 4.59 16 34 H 0.11 5.62 6.33 -2.91 -0.02 5.60 16 35 H 0.29 12.51 8.30 -92.71 -0.77 11.74 16 Total: -1.00 -54.56 305.76 5.06 -49.50 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.20 Total: 38.36 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 4.20 Total: -26.58 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -0.97 Total: -97.33 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 2.03 Total: 36.05 kcal Total: -54.56 5.06 -49.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244085265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.691 kcal (2) G-P(sol) polarization free energy of solvation -54.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds