Wall clock time and date at job start Tue Mar 31 2020 00:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38885 * 119.24201 * 2 1 4 4 C 1.36869 * 119.81383 * 179.71923 * 3 2 1 5 5 C 1.41124 * 118.40459 * 0.53499 * 4 3 2 6 6 C 1.40841 * 120.72333 * 179.70664 * 5 4 3 7 7 H 1.07998 * 119.99782 * 151.21141 * 6 5 4 8 8 C 1.40024 * 120.00122 * 331.20564 * 6 5 4 9 9 N 1.30800 * 120.00371 * 348.78204 * 8 6 5 10 10 Si 1.86807 * 119.99930 * 168.77282 * 8 6 5 11 11 H 1.48497 * 109.46972 * 90.00304 * 10 8 6 12 12 H 1.48500 * 109.46907 * 210.00345 * 10 8 6 13 13 H 1.48502 * 109.47107 * 330.00182 * 10 8 6 14 14 C 1.41937 * 118.55271 * 359.72792 * 5 4 3 15 15 C 1.47661 * 120.00013 * 180.02562 * 14 5 4 16 16 C 1.40055 * 119.98049 * 315.96374 * 15 14 5 17 17 C 1.37571 * 120.26709 * 179.75809 * 16 15 14 18 18 C 1.39160 * 120.23482 * 0.51434 * 17 16 15 19 19 N 1.38655 * 120.01989 * 179.76250 * 18 17 16 20 20 C 1.40607 * 119.96273 * 359.74382 * 18 17 16 21 21 C 1.43199 * 120.13712 * 180.02562 * 20 18 17 22 22 N 7.35275 * 106.00529 * 160.70881 * 2 1 3 23 23 C 1.39305 * 119.72463 * 359.97438 * 20 18 17 24 24 N 1.31721 * 119.24172 * 180.26277 * 2 1 3 25 25 H 1.08997 * 109.47164 * 269.73599 * 1 2 3 26 26 H 1.08999 * 109.46609 * 149.73077 * 1 2 3 27 27 H 1.09003 * 109.46836 * 29.73342 * 1 2 3 28 28 H 1.08002 * 120.09591 * 359.97323 * 3 2 1 29 29 H 1.08006 * 120.80180 * 180.24126 * 4 3 2 30 30 H 0.96998 * 120.00529 * 179.97438 * 9 8 6 31 31 H 1.07988 * 119.86566 * 0.02562 * 16 15 14 32 32 H 1.07996 * 119.88245 * 180.26135 * 17 16 15 33 33 H 0.96997 * 119.99748 * 179.97438 * 19 18 17 34 34 H 0.96995 * 119.99794 * 359.97438 * 19 18 17 35 35 H 1.08003 * 120.11588 * 179.97438 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1855 1.2119 0.0000 4 6 3.5541 1.2255 0.0058 5 6 4.2378 -0.0090 0.0001 6 6 5.6456 -0.0519 -0.0005 7 1 6.1605 -0.8897 0.4460 8 6 6.3776 0.9916 -0.5802 9 7 5.7692 1.8909 -1.3095 10 14 8.2231 1.0994 -0.3116 11 1 8.9239 0.3454 -1.3819 12 1 8.6465 2.5223 -0.3499 13 1 8.5659 0.5164 1.0105 14 6 3.4759 -1.2065 -0.0055 15 6 4.1584 -2.5159 -0.0110 16 6 5.2556 -2.7297 -0.8547 17 6 5.8989 -3.9457 -0.8610 18 6 5.4576 -4.9762 -0.0365 19 7 6.1063 -6.2016 -0.0500 20 6 4.3537 -4.7740 0.8105 21 6 3.8967 -5.8317 1.6609 22 7 3.5344 -6.6709 2.3350 23 6 3.7070 -3.5402 0.8199 24 7 2.1505 -1.1493 -0.0053 25 1 -0.3633 -0.0047 1.0276 26 1 -0.3632 -0.8876 -0.5180 27 1 -0.3633 0.8924 -0.5097 28 1 1.6347 2.1409 -0.0004 29 1 4.0979 2.1587 0.0098 30 1 6.2762 2.6139 -1.7107 31 1 5.6006 -1.9354 -1.4999 32 1 6.7470 -4.1024 -1.5111 33 1 5.7986 -6.9195 0.5250 34 1 6.8677 -6.3407 -0.6346 35 1 2.8582 -3.3781 1.4677 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244109681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:10 Heat of formation + Delta-G solvation = 52.255704 kcal Electronic energy + Delta-G solvation = -20281.953597 eV Core-core repulsion = 17243.058331 eV Total energy + Delta-G solvation = -3038.895267 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84491 -39.84321 -37.38564 -36.12350 -35.67283 -33.03851 -32.51270 -32.10728 -29.72620 -29.08770 -25.94199 -24.67365 -23.96967 -22.36205 -22.16975 -19.42190 -19.07164 -17.89381 -17.79588 -17.19216 -16.55975 -15.95605 -15.56773 -15.28496 -15.08919 -14.82466 -14.68759 -14.31602 -14.06629 -13.90207 -13.74089 -13.57068 -13.32941 -13.09659 -13.00336 -12.81652 -12.55887 -12.53707 -12.13308 -11.99931 -11.62053 -11.40223 -11.07823 -10.09062 -9.85268 -9.77456 -9.31995 -8.62808 -8.23698 -6.27003 0.06950 0.40553 0.96648 1.25014 1.46556 1.55277 1.60227 1.63277 2.07924 2.24446 2.80420 2.90456 3.01003 3.08318 3.74056 3.93523 4.00212 4.39737 4.48401 4.57697 4.67087 4.71540 4.77848 4.98046 5.02748 5.05467 5.14993 5.23360 5.30154 5.30605 5.41132 5.58999 5.84185 5.86082 5.96743 6.13244 6.16779 6.45417 6.49986 6.61786 6.85682 6.90706 6.90995 7.82294 8.34120 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.007154 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.000196 B = 3912.830391 C = 5824.717510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.019 4.019 3 C -0.152 4.152 4 C -0.150 4.150 5 C 0.053 3.947 6 C -0.456 4.456 7 H 0.091 0.909 8 C 0.039 3.961 9 N -0.823 5.823 10 Si 0.974 3.026 11 H -0.254 1.254 12 H -0.274 1.274 13 H -0.259 1.259 14 C 0.020 3.980 15 C -0.066 4.066 16 C -0.014 4.014 17 C -0.195 4.195 18 C 0.273 3.727 19 N -0.850 5.850 20 C -0.137 4.137 21 C 0.288 3.712 22 N -0.474 5.474 23 C -0.015 4.015 24 N -0.472 5.472 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.290 0.710 31 H 0.128 0.872 32 H 0.162 0.838 33 H 0.400 0.600 34 H 0.418 0.582 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 -6.203 -1.612 7.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.160 4.160 3 C -0.172 4.172 4 C -0.175 4.175 5 C 0.049 3.951 6 C -0.485 4.485 7 H 0.109 0.891 8 C -0.177 4.177 9 N -0.448 5.448 10 Si 0.795 3.205 11 H -0.179 1.179 12 H -0.199 1.199 13 H -0.183 1.183 14 C -0.119 4.119 15 C -0.069 4.069 16 C -0.034 4.034 17 C -0.217 4.217 18 C 0.161 3.839 19 N -0.388 5.388 20 C -0.147 4.147 21 C -0.025 4.025 22 N -0.151 5.151 23 C -0.037 4.037 24 N -0.181 5.181 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.145 0.855 32 H 0.179 0.821 33 H 0.229 0.771 34 H 0.250 0.750 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.256 -8.043 -0.735 8.708 hybrid contribution 1.168 1.523 -0.137 1.924 sum 4.424 -6.521 -0.872 7.928 Atomic orbital electron populations 1.20337 0.88505 1.02128 1.01734 1.21000 0.97041 0.88215 1.09735 1.21521 0.95080 0.98387 1.02246 1.21468 0.93526 0.98645 1.03904 1.18685 0.95130 0.91306 0.90025 1.19672 0.90811 1.05763 1.32301 0.89092 1.26714 1.05466 0.93397 0.92083 1.69810 1.40417 1.11651 1.22936 0.85288 0.76405 0.78513 0.80252 1.17857 1.19887 1.18310 1.19880 0.88439 0.92386 1.11186 1.18053 0.97740 0.91557 0.99558 1.21401 0.91592 0.96287 0.94140 1.20634 1.04823 0.91776 1.04448 1.17585 0.88465 0.87136 0.90719 1.42280 1.36639 1.11031 1.48881 1.15295 1.03204 0.91308 1.04869 1.25638 0.92354 0.92320 0.92160 1.81192 1.10197 1.11794 1.11957 1.20877 0.96724 0.90162 0.95962 1.67014 1.09928 1.29889 1.11249 0.91717 0.92354 0.90721 0.86081 0.86744 0.89962 0.85459 0.82054 0.77141 0.74992 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 10.15 71.24 0.72 -1.64 16 2 C -0.02 -0.85 6.79 42.73 0.29 -0.56 16 3 C -0.15 -6.85 9.64 22.10 0.21 -6.64 16 4 C -0.15 -7.45 8.71 22.66 0.20 -7.25 16 5 C 0.05 2.66 5.54 -21.02 -0.12 2.54 16 6 C -0.46 -21.59 6.71 23.34 0.16 -21.43 16 7 H 0.09 4.12 6.50 -2.91 -0.02 4.10 16 8 C 0.04 1.75 5.26 85.28 0.45 2.20 16 9 N -0.82 -38.96 10.91 21.84 0.24 -38.72 16 10 Si 0.97 34.02 29.58 68.60 2.03 36.05 16 11 H -0.25 -8.33 7.11 99.48 0.71 -7.63 16 12 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 13 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 14 C 0.02 0.94 6.42 42.43 0.27 1.21 16 15 C -0.07 -2.69 5.25 -20.07 -0.11 -2.79 16 16 C -0.01 -0.48 7.83 22.55 0.18 -0.31 16 17 C -0.19 -5.12 9.85 22.33 0.22 -4.90 16 18 C 0.27 6.92 6.76 38.86 0.26 7.19 16 19 N -0.85 -14.82 8.97 -50.79 -0.46 -15.27 16 20 C -0.14 -4.22 5.75 -21.20 -0.12 -4.35 16 21 C 0.29 8.93 14.07 88.33 1.24 10.17 16 22 N -0.47 -15.69 18.54 19.00 0.35 -15.34 16 23 C -0.02 -0.56 9.35 22.81 0.21 -0.35 16 24 N -0.47 -22.45 10.05 -171.18 -1.72 -24.17 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 2.17 8.07 -2.39 -0.02 2.16 16 28 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 29 H 0.11 5.86 6.34 -2.91 -0.02 5.84 16 30 H 0.29 12.47 8.30 -92.71 -0.77 11.70 16 31 H 0.13 4.85 6.75 -2.92 -0.02 4.83 16 32 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.40 6.87 7.66 -92.71 -0.71 6.16 16 34 H 0.42 4.70 8.83 -92.71 -0.82 3.88 16 35 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -58.53 310.35 4.15 -54.38 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.36 Total: 29.97 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.07 Total: -26.90 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -1.59 Total: -93.50 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 2.03 Total: 36.05 kcal Total: -58.53 4.15 -54.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244109681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.635 kcal (2) G-P(sol) polarization free energy of solvation -58.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds