Wall clock time and date at job start Tue Mar 31 2020 00:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47379 * 2 1 4 4 C 1.37697 * 120.01111 * 99.99842 * 3 2 1 5 5 C 1.39509 * 120.02429 * 179.97438 * 4 3 2 6 6 C 1.48226 * 119.97551 * 179.97438 * 5 4 3 7 7 C 1.40049 * 119.98607 * 5.00402 * 6 5 4 8 8 N 1.32186 * 120.29437 * 180.29544 * 7 6 5 9 9 C 1.31886 * 120.27956 * 359.44306 * 8 7 6 10 10 C 1.40842 * 119.97146 * 0.55522 * 9 8 7 11 11 C 1.41334 * 120.15036 * 179.69799 * 10 9 8 12 12 H 1.07992 * 120.00477 * 155.21891 * 11 10 9 13 13 C 1.40054 * 119.99885 * 335.22467 * 11 10 9 14 14 N 1.30739 * 119.99764 * 342.16493 * 13 11 10 15 15 Si 1.86797 * 120.00421 * 162.17240 * 13 11 10 16 16 H 1.48494 * 109.47546 * 94.65610 * 15 13 11 17 17 H 1.48502 * 109.47132 * 214.66126 * 15 13 11 18 18 H 1.48504 * 109.46748 * 334.65483 * 15 13 11 19 19 N 1.32552 * 119.98991 * 185.02101 * 6 5 4 20 20 C 1.39553 * 120.05186 * 0.28137 * 5 4 3 21 21 C 1.37657 * 120.02304 * 359.44061 * 20 5 4 22 22 C 1.39722 * 120.01637 * 279.98169 * 3 2 1 23 23 C 1.43197 * 120.02357 * 0.04020 * 22 3 2 24 24 N 3.55662 * 85.88981 * 287.54914 * 2 1 3 25 25 H 1.09008 * 109.47485 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47497 * 299.99661 * 1 2 3 27 27 H 1.09002 * 109.47558 * 59.99815 * 1 2 3 28 28 H 1.09003 * 109.46849 * 239.99955 * 2 1 3 29 29 H 1.09002 * 109.47558 * 120.00185 * 2 1 3 30 30 H 1.07995 * 119.98595 * 359.96413 * 4 3 2 31 31 H 1.08001 * 119.85379 * 0.02562 * 7 6 5 32 32 H 1.08003 * 120.00996 * 180.27644 * 9 8 7 33 33 H 0.96994 * 119.99834 * 180.02562 * 14 13 11 34 34 H 1.08002 * 119.98892 * 179.70767 * 20 5 4 35 35 H 1.08003 * 120.01140 * 180.30299 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4571 2.0011 1.1743 5 6 2.9227 3.3162 1.1745 6 6 3.3792 3.9400 2.4392 7 6 3.4420 3.1781 3.6127 8 7 3.8426 3.7296 4.7452 9 6 4.1971 4.9995 4.7775 10 6 4.1384 5.7765 3.6042 11 6 4.5113 7.1394 3.6359 12 1 4.8525 7.6270 2.7347 13 6 4.4385 7.8576 4.8361 14 7 3.7175 7.4027 5.8273 15 14 5.3713 9.4654 5.0206 16 1 4.4721 10.6001 4.6907 17 1 5.8489 9.6028 6.4200 18 1 6.5347 9.4713 4.0977 19 7 3.7275 5.2187 2.4593 20 6 2.9531 4.0470 -0.0140 21 6 2.5343 3.4670 -1.1901 22 6 2.0676 2.1496 -1.1915 23 6 1.6257 1.5474 -2.4132 24 7 1.2750 1.0696 -3.3824 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4296 1.4380 2.0954 31 1 3.1577 2.1363 3.5931 32 1 4.5280 5.4446 5.7042 33 1 3.6668 7.9003 6.6583 34 1 3.3094 5.0665 -0.0118 35 1 2.5625 4.0312 -2.1106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244950665.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:47 Heat of formation + Delta-G solvation = 72.643379 kcal Electronic energy + Delta-G solvation = -19721.747302 eV Core-core repulsion = 16683.736112 eV Total energy + Delta-G solvation = -3038.011191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 6.70 seconds Orbital eigenvalues (eV) -39.91513 -38.87854 -36.38948 -34.51861 -34.14653 -32.76822 -31.82510 -29.62643 -29.07363 -26.38134 -24.60501 -23.82099 -22.48574 -21.50561 -20.64243 -18.55799 -17.79010 -16.37874 -15.79219 -15.49564 -15.31809 -14.90389 -14.44223 -14.16546 -13.71757 -13.67821 -13.39991 -13.33879 -13.03912 -12.83389 -12.64121 -12.10614 -11.93431 -11.75429 -11.56353 -11.47685 -11.35690 -11.07938 -10.96418 -10.73889 -10.51490 -10.00983 -9.96300 -9.57263 -8.85137 -8.69216 -7.67863 -7.48462 -7.17222 -4.84124 0.65108 1.47374 2.27273 2.60143 2.68501 2.92863 2.96383 3.02402 3.22623 3.69645 3.95057 3.99089 4.37599 4.57480 4.73103 4.96300 5.10588 5.22952 5.38630 5.45117 5.50457 5.54330 5.75598 5.78260 5.80627 5.90033 5.95399 6.09792 6.15639 6.27212 6.42275 6.48464 6.69435 6.80611 6.90324 6.98486 7.10693 7.45542 7.50119 8.00841 8.28878 8.34836 8.98270 9.45475 9.81602 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.003757 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.580493 B = 7451.822737 C = 8156.234344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.036 4.036 4 C -0.110 4.110 5 C 0.024 3.976 6 C 0.117 3.883 7 C -0.081 4.081 8 N -0.444 5.444 9 C 0.020 3.980 10 C 0.227 3.773 11 C -0.421 4.421 12 H 0.093 0.907 13 C 0.075 3.925 14 N -0.781 5.781 15 Si 0.925 3.075 16 H -0.267 1.267 17 H -0.272 1.272 18 H -0.256 1.256 19 N -0.516 5.516 20 C -0.095 4.095 21 C -0.071 4.071 22 C -0.049 4.049 23 C 0.267 3.733 24 N -0.436 5.436 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.161 0.839 33 H 0.290 0.710 34 H 0.146 0.854 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.692 -5.913 -5.327 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.039 4.039 4 C -0.129 4.129 5 C 0.022 3.978 6 C -0.025 4.025 7 C -0.237 4.237 8 N -0.155 5.155 9 C -0.151 4.151 10 C 0.098 3.902 11 C -0.454 4.454 12 H 0.111 0.889 13 C -0.147 4.147 14 N -0.406 5.406 15 Si 0.748 3.252 16 H -0.192 1.192 17 H -0.196 1.196 18 H -0.180 1.180 19 N -0.235 5.235 20 C -0.114 4.114 21 C -0.091 4.091 22 C -0.053 4.053 23 C -0.047 4.047 24 N -0.112 5.112 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.178 0.822 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.342 -6.647 -6.605 9.659 hybrid contribution 0.378 0.979 0.622 1.219 sum -1.965 -5.668 -5.983 8.473 Atomic orbital electron populations 1.21754 0.94401 1.01879 1.02450 1.20616 0.96532 0.92254 1.03302 1.19702 0.97040 0.95687 0.91476 1.21055 0.99696 0.94597 0.97545 1.18964 0.93970 0.92449 0.92456 1.20316 0.97991 0.92127 0.92063 1.22686 1.11727 0.99913 0.89395 1.67937 1.07580 1.12987 1.27024 1.23922 1.01695 0.88701 1.00762 1.19309 0.88704 0.94686 0.87498 1.19379 1.36549 0.93424 0.96094 0.88916 1.26060 0.93206 1.00761 0.94637 1.69716 1.27610 1.38627 1.04646 0.86011 0.80447 0.79848 0.78909 1.19151 1.19624 1.17964 1.68874 1.16007 1.09088 1.29525 1.21332 0.98358 1.01116 0.90557 1.21083 0.96643 0.92512 0.98873 1.15905 1.07524 0.94799 0.87032 1.25742 0.93104 0.93090 0.92763 1.81206 1.10025 1.08841 1.11131 0.92246 0.91849 0.92906 0.91130 0.89984 0.84539 0.84952 0.82226 0.89825 0.83622 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.84 37.15 0.37 -1.08 16 2 C -0.09 -0.92 5.54 -27.89 -0.15 -1.07 16 3 C -0.04 -0.45 5.16 -104.27 -0.54 -0.99 16 4 C -0.11 -1.53 9.02 -39.31 -0.35 -1.89 16 5 C 0.02 0.41 5.88 -104.83 -0.62 -0.21 16 6 C 0.12 2.51 6.73 -82.77 -0.56 1.95 16 7 C -0.08 -1.73 10.61 -16.72 -0.18 -1.91 16 8 N -0.44 -10.67 10.47 -12.04 -0.13 -10.80 16 9 C 0.02 0.51 9.88 -16.54 -0.16 0.35 16 10 C 0.23 5.77 6.41 -84.84 -0.54 5.23 16 11 C -0.42 -10.31 9.29 -37.72 -0.35 -10.66 16 12 H 0.09 2.20 7.91 -52.49 -0.42 1.79 16 13 C 0.08 1.69 5.13 -17.34 -0.09 1.60 16 14 N -0.78 -18.22 10.97 55.55 0.61 -17.62 16 15 Si 0.92 16.72 29.60 -169.99 -5.03 11.69 16 16 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 17 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 18 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 19 N -0.52 -12.42 9.55 -7.51 -0.07 -12.49 16 20 C -0.09 -1.46 9.56 -39.30 -0.38 -1.84 16 21 C -0.07 -0.91 9.74 -39.23 -0.38 -1.29 16 22 C -0.05 -0.62 5.74 -106.85 -0.61 -1.24 16 23 C 0.27 3.55 13.19 -22.47 -0.30 3.26 16 24 N -0.44 -6.42 18.54 41.84 0.78 -5.65 16 25 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.57 7.38 -51.93 -0.38 0.19 16 28 H 0.07 0.72 7.47 -51.93 -0.39 0.33 16 29 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 30 H 0.14 1.71 6.17 -52.49 -0.32 1.39 16 31 H 0.13 2.36 6.20 -52.49 -0.33 2.04 16 32 H 0.16 4.02 6.17 -52.48 -0.32 3.69 16 33 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 34 H 0.15 2.37 7.54 -52.49 -0.40 1.98 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -26.92 311.63 -7.37 -34.29 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.37 Total: 5.67 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -4.85 Total: -9.78 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 1.19 Total: -46.55 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.92 -7.37 -34.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244950665.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.931 kcal (2) G-P(sol) polarization free energy of solvation -26.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.70 seconds