Wall clock time and date at job start Tue Mar 31 2020 00:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47379 * 2 1 4 4 C 1.37697 * 120.01111 * 99.99842 * 3 2 1 5 5 C 1.39509 * 120.02429 * 179.97438 * 4 3 2 6 6 C 1.48226 * 119.97551 * 179.97438 * 5 4 3 7 7 C 1.40049 * 119.98607 * 5.00402 * 6 5 4 8 8 N 1.32186 * 120.29437 * 180.29544 * 7 6 5 9 9 C 1.31886 * 120.27956 * 359.44306 * 8 7 6 10 10 C 1.40842 * 119.97146 * 0.55522 * 9 8 7 11 11 C 1.41334 * 120.15036 * 179.69799 * 10 9 8 12 12 H 1.07992 * 120.00477 * 155.21891 * 11 10 9 13 13 C 1.40054 * 119.99885 * 335.22467 * 11 10 9 14 14 N 1.30739 * 119.99764 * 342.16493 * 13 11 10 15 15 Si 1.86797 * 120.00421 * 162.17240 * 13 11 10 16 16 H 1.48494 * 109.47546 * 94.65610 * 15 13 11 17 17 H 1.48502 * 109.47132 * 214.66126 * 15 13 11 18 18 H 1.48504 * 109.46748 * 334.65483 * 15 13 11 19 19 N 1.32552 * 119.98991 * 185.02101 * 6 5 4 20 20 C 1.39553 * 120.05186 * 0.28137 * 5 4 3 21 21 C 1.37657 * 120.02304 * 359.44061 * 20 5 4 22 22 C 1.39722 * 120.01637 * 279.98169 * 3 2 1 23 23 C 1.43197 * 120.02357 * 0.04020 * 22 3 2 24 24 N 3.55662 * 85.88981 * 287.54914 * 2 1 3 25 25 H 1.09008 * 109.47485 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47497 * 299.99661 * 1 2 3 27 27 H 1.09002 * 109.47558 * 59.99815 * 1 2 3 28 28 H 1.09003 * 109.46849 * 239.99955 * 2 1 3 29 29 H 1.09002 * 109.47558 * 120.00185 * 2 1 3 30 30 H 1.07995 * 119.98595 * 359.96413 * 4 3 2 31 31 H 1.08001 * 119.85379 * 0.02562 * 7 6 5 32 32 H 1.08003 * 120.00996 * 180.27644 * 9 8 7 33 33 H 0.96994 * 119.99834 * 180.02562 * 14 13 11 34 34 H 1.08002 * 119.98892 * 179.70767 * 20 5 4 35 35 H 1.08003 * 120.01140 * 180.30299 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4571 2.0011 1.1743 5 6 2.9227 3.3162 1.1745 6 6 3.3792 3.9400 2.4392 7 6 3.4420 3.1781 3.6127 8 7 3.8426 3.7296 4.7452 9 6 4.1971 4.9995 4.7775 10 6 4.1384 5.7765 3.6042 11 6 4.5113 7.1394 3.6359 12 1 4.8525 7.6270 2.7347 13 6 4.4385 7.8576 4.8361 14 7 3.7175 7.4027 5.8273 15 14 5.3713 9.4654 5.0206 16 1 4.4721 10.6001 4.6907 17 1 5.8489 9.6028 6.4200 18 1 6.5347 9.4713 4.0977 19 7 3.7275 5.2187 2.4593 20 6 2.9531 4.0470 -0.0140 21 6 2.5343 3.4670 -1.1901 22 6 2.0676 2.1496 -1.1915 23 6 1.6257 1.5474 -2.4132 24 7 1.2750 1.0696 -3.3824 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4296 1.4380 2.0954 31 1 3.1577 2.1363 3.5931 32 1 4.5280 5.4446 5.7042 33 1 3.6668 7.9003 6.6583 34 1 3.3094 5.0665 -0.0118 35 1 2.5625 4.0312 -2.1106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244950665.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:42 Heat of formation + Delta-G solvation = 58.800545 kcal Electronic energy + Delta-G solvation = -19722.347573 eV Core-core repulsion = 16683.736112 eV Total energy + Delta-G solvation = -3038.611461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.32061 -40.33818 -37.55448 -36.09274 -35.38388 -34.33381 -33.28555 -30.90112 -30.36128 -28.10562 -25.96897 -24.94526 -23.98646 -23.03322 -21.80753 -19.78871 -19.39598 -17.99632 -17.35570 -16.97980 -16.65518 -16.34788 -15.57187 -15.35638 -15.08084 -14.94411 -14.61499 -14.46898 -14.36663 -13.91488 -13.72447 -13.53376 -13.25712 -13.07940 -12.97975 -12.86575 -12.71043 -12.51535 -12.02758 -11.87208 -11.82911 -11.72665 -11.69350 -11.17497 -10.31814 -9.80649 -9.39662 -9.12601 -8.87907 -6.67687 -0.59924 0.38402 0.65964 0.93045 1.42551 1.51336 1.59828 1.60116 1.99186 2.18191 2.59887 2.83146 2.89814 3.35619 3.70041 3.70953 3.83525 4.02325 4.18526 4.27193 4.38942 4.44577 4.50306 4.52253 4.63091 4.76911 4.95845 4.98794 5.04790 5.07238 5.11342 5.18434 5.34920 5.37287 5.44515 5.63708 5.69439 5.81266 6.16211 6.41722 6.50631 6.55245 7.18289 7.65882 8.14047 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.003757 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.580493 B = 7451.822737 C = 8156.234344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.027 4.027 4 C -0.098 4.098 5 C -0.006 4.006 6 C 0.122 3.878 7 C -0.090 4.090 8 N -0.453 5.453 9 C -0.016 4.016 10 C 0.202 3.798 11 C -0.451 4.451 12 H 0.089 0.911 13 C 0.041 3.959 14 N -0.808 5.808 15 Si 1.000 3.000 16 H -0.260 1.260 17 H -0.260 1.260 18 H -0.255 1.255 19 N -0.536 5.536 20 C -0.101 4.101 21 C -0.059 4.059 22 C -0.039 4.039 23 C 0.284 3.716 24 N -0.455 5.455 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.171 0.829 32 H 0.149 0.851 33 H 0.301 0.699 34 H 0.130 0.870 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 -6.910 -6.383 9.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.030 4.030 4 C -0.117 4.117 5 C -0.008 4.008 6 C -0.022 4.022 7 C -0.248 4.248 8 N -0.165 5.165 9 C -0.185 4.185 10 C 0.074 3.926 11 C -0.484 4.484 12 H 0.107 0.893 13 C -0.178 4.178 14 N -0.434 5.434 15 Si 0.819 3.181 16 H -0.185 1.185 17 H -0.184 1.184 18 H -0.179 1.179 19 N -0.255 5.255 20 C -0.120 4.120 21 C -0.079 4.079 22 C -0.043 4.043 23 C -0.030 4.030 24 N -0.131 5.131 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.166 0.834 33 H 0.112 0.888 34 H 0.148 0.852 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.771 -7.636 -7.640 11.152 hybrid contribution 0.395 1.110 0.780 1.413 sum -2.376 -6.526 -6.860 9.762 Atomic orbital electron populations 1.21755 0.93963 1.02842 1.01853 1.20709 0.96763 0.90629 1.04568 1.19927 0.95714 0.96745 0.90564 1.21149 0.98544 0.93220 0.98804 1.18900 0.96842 0.94016 0.91051 1.20963 0.95900 0.91275 0.94050 1.23303 1.11154 1.01559 0.88745 1.67881 1.07580 1.12619 1.28445 1.23687 1.04792 0.89463 1.00551 1.19603 0.89393 0.95445 0.88135 1.19647 1.37956 0.93675 0.97147 0.89274 1.26952 0.93338 1.04028 0.93528 1.69748 1.28126 1.40183 1.05300 0.84919 0.78842 0.75129 0.79247 1.18460 1.18381 1.17895 1.68920 1.16713 1.10707 1.29199 1.21232 0.99035 1.00597 0.91162 1.21214 0.95279 0.92600 0.98814 1.15994 1.06562 0.94678 0.87092 1.25600 0.92514 0.92513 0.92373 1.81242 1.10573 1.09517 1.11731 0.90608 0.91794 0.94145 0.90777 0.87907 0.82879 0.81185 0.83365 0.88792 0.85165 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.84 71.98 0.71 -1.70 16 2 C -0.09 -1.50 5.54 29.84 0.17 -1.33 16 3 C -0.03 -0.58 5.16 -19.63 -0.10 -0.69 16 4 C -0.10 -2.49 9.02 22.45 0.20 -2.29 16 5 C -0.01 -0.19 5.88 -20.00 -0.12 -0.31 16 6 C 0.12 5.24 6.73 42.13 0.28 5.53 16 7 C -0.09 -3.85 10.61 85.08 0.90 -2.95 16 8 N -0.45 -22.30 10.47 -192.02 -2.01 -24.31 16 9 C -0.02 -0.84 9.88 85.32 0.84 0.00 16 10 C 0.20 10.75 6.41 40.24 0.26 11.01 16 11 C -0.45 -23.06 9.29 23.47 0.22 -22.84 16 12 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 13 C 0.04 1.88 5.13 85.30 0.44 2.32 16 14 N -0.81 -38.82 10.97 21.84 0.24 -38.58 16 15 Si 1.00 34.38 29.60 68.60 2.03 36.41 16 16 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 17 H -0.26 -8.37 7.11 99.48 0.71 -7.67 16 18 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 19 N -0.54 -26.71 9.55 -177.68 -1.70 -28.41 16 20 C -0.10 -3.05 9.56 22.45 0.21 -2.84 16 21 C -0.06 -1.38 9.74 22.50 0.22 -1.16 16 22 C -0.04 -0.90 5.74 -21.31 -0.12 -1.02 16 23 C 0.28 6.75 13.19 88.33 1.16 7.92 16 24 N -0.45 -12.27 18.54 19.00 0.35 -11.92 16 25 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.04 0.76 7.38 -2.39 -0.02 0.74 16 28 H 0.07 1.24 7.47 -2.39 -0.02 1.22 16 29 H 0.10 1.35 8.00 -2.39 -0.02 1.33 16 30 H 0.15 3.32 6.17 -2.91 -0.02 3.30 16 31 H 0.17 5.72 6.20 -2.91 -0.02 5.70 16 32 H 0.15 7.92 6.17 -2.91 -0.02 7.90 16 33 H 0.30 12.75 8.29 -92.71 -0.77 11.98 16 34 H 0.13 4.32 7.54 -2.91 -0.02 4.30 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -60.31 311.63 5.33 -54.98 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.14 Total: 22.18 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 5.28 Total: -10.35 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -3.12 Total: -103.22 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Total: -60.31 5.33 -54.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244950665.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.783 kcal (2) G-P(sol) polarization free energy of solvation -60.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds