Wall clock time and date at job start Tue Mar 31 2020 00:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38843 * 118.90718 * 2 1 4 4 C 1.36718 * 120.44675 * 179.97438 * 3 2 1 5 5 C 1.41277 * 118.37098 * 0.02562 * 4 3 2 6 6 C 1.40672 * 120.98351 * 179.72432 * 5 4 3 7 7 H 1.08000 * 120.00198 * 150.30208 * 6 5 4 8 8 C 1.40040 * 120.00361 * 330.30432 * 6 5 4 9 9 N 1.30791 * 120.00296 * 162.11113 * 8 6 5 10 10 Si 1.86804 * 119.99647 * 342.11503 * 8 6 5 11 11 H 1.48506 * 109.46951 * 95.33209 * 10 8 6 12 12 H 1.48503 * 109.47051 * 215.32540 * 10 8 6 13 13 H 1.48495 * 109.47152 * 335.33113 * 10 8 6 14 14 C 1.46564 * 118.03216 * 0.02562 * 5 4 3 15 15 C 1.46972 * 120.33877 * 180.02562 * 14 5 4 16 16 C 1.36258 * 125.43918 * 144.99803 * 15 14 5 17 17 C 1.41418 * 107.58497 * 179.97438 * 16 15 14 18 18 C 1.40196 * 133.68396 * 180.02562 * 17 16 15 19 19 C 1.37078 * 118.19945 * 179.97438 * 18 17 16 20 20 C 1.38701 * 119.63556 * 0.08438 * 19 18 17 21 21 N 1.31661 * 121.57441 * 359.93291 * 20 19 18 22 22 C 1.32637 * 121.56454 * 0.02562 * 21 20 19 23 23 N 1.37473 * 132.92363 * 180.32242 * 22 21 20 24 24 H 0.96997 * 125.53457 * 359.93497 * 23 22 21 25 25 N 1.31501 * 118.90428 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47243 * 89.99532 * 1 2 3 27 27 H 1.08997 * 109.47547 * 210.00019 * 1 2 3 28 28 H 1.09003 * 109.47372 * 330.00375 * 1 2 3 29 29 H 1.07996 * 119.77537 * 0.02562 * 3 2 1 30 30 H 1.07990 * 120.81205 * 180.02562 * 4 3 2 31 31 H 0.97003 * 120.00243 * 180.02562 * 9 8 6 32 32 H 1.07992 * 126.20471 * 359.97438 * 16 15 14 33 33 H 1.07997 * 120.90300 * 359.97438 * 18 17 16 34 34 H 1.08002 * 120.18281 * 180.02562 * 19 18 17 35 35 H 1.07994 * 119.21468 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1781 1.2154 0.0000 4 6 3.5448 1.2522 0.0005 5 6 4.2492 0.0276 0.0005 6 6 5.6557 0.0012 -0.0048 7 1 6.1822 -0.8202 0.4584 8 6 6.3733 1.0401 -0.6105 9 7 7.6383 1.2132 -0.3270 10 14 5.5236 2.1787 -1.8234 11 1 5.0587 3.3983 -1.1151 12 1 6.4781 2.5620 -2.8946 13 1 4.3587 1.4811 -2.4247 14 6 3.4713 -1.2146 -0.0006 15 6 4.1523 -2.5170 -0.0002 16 6 3.7119 -3.6386 0.6359 17 6 4.6503 -4.6670 0.3875 18 6 4.7356 -6.0131 0.7700 19 6 5.8131 -6.7422 0.3381 20 6 6.7779 -6.1369 -0.4533 21 7 6.6864 -4.8715 -0.8053 22 6 5.6673 -4.1154 -0.4193 23 7 5.3381 -2.8003 -0.6473 24 1 5.8560 -2.1730 -1.1756 25 7 2.1425 -1.1512 -0.0005 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6167 2.1381 0.0004 30 1 4.0728 2.1942 0.0009 31 1 8.1353 1.9330 -0.7463 32 1 2.8098 -3.7263 1.2231 33 1 3.9730 -6.4635 1.3881 34 1 5.9106 -7.7820 0.6134 35 1 7.6242 -6.7175 -0.7894 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245400655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:14 Heat of formation + Delta-G solvation = 85.712711 kcal Electronic energy + Delta-G solvation = -20527.926853 eV Core-core repulsion = 17490.482391 eV Total energy + Delta-G solvation = -3037.444462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03282 -38.75037 -37.16431 -34.49920 -32.57548 -32.03823 -31.62115 -29.64719 -28.31190 -28.10528 -24.82269 -23.23683 -22.15204 -21.70614 -20.72396 -19.81550 -17.91001 -17.53525 -16.30686 -15.81381 -15.55161 -14.99163 -14.50073 -14.40138 -13.97214 -13.56548 -13.50592 -13.15221 -12.67680 -12.49719 -12.34169 -12.20475 -11.93854 -11.78419 -11.72557 -11.45147 -11.28582 -11.00780 -10.58135 -10.23536 -10.04144 -9.77258 -8.94402 -8.80356 -8.41460 -8.13866 -7.89168 -7.40323 -7.09281 -4.89663 1.27693 1.86936 2.05316 2.42758 2.81306 2.92120 3.01963 3.34524 3.50613 3.61952 4.17979 4.38740 4.98307 5.02920 5.16142 5.21380 5.48050 5.50941 5.62971 5.67147 5.84590 5.93713 6.09685 6.19672 6.20677 6.24228 6.31740 6.40467 6.40981 6.65952 6.70200 6.86467 7.00612 7.02698 7.21020 7.33094 7.50408 7.57825 7.80637 7.96314 8.13094 8.25165 8.53774 9.16206 9.57545 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.006716 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.101423 B = 4168.173264 C = 5712.555130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.017 4.017 3 C -0.103 4.103 4 C -0.207 4.207 5 C 0.066 3.934 6 C -0.428 4.428 7 H 0.104 0.896 8 C 0.082 3.918 9 N -0.773 5.773 10 Si 0.912 3.088 11 H -0.263 1.263 12 H -0.282 1.282 13 H -0.242 1.242 14 C 0.029 3.971 15 C 0.211 3.789 16 C -0.202 4.202 17 C -0.136 4.136 18 C -0.043 4.043 19 C -0.207 4.207 20 C 0.115 3.885 21 N -0.493 5.493 22 C 0.269 3.731 23 N -0.556 5.556 24 H 0.428 0.572 25 N -0.418 5.418 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.294 0.706 32 H 0.144 0.856 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 -5.036 -0.367 6.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C -0.123 4.123 4 C -0.232 4.232 5 C 0.061 3.939 6 C -0.455 4.455 7 H 0.121 0.879 8 C -0.142 4.142 9 N -0.394 5.394 10 Si 0.736 3.264 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.165 1.165 14 C -0.112 4.112 15 C 0.101 3.899 16 C -0.227 4.227 17 C -0.143 4.143 18 C -0.069 4.069 19 C -0.229 4.229 20 C -0.052 4.052 21 N -0.205 5.205 22 C 0.034 3.966 23 N -0.162 5.162 24 H 0.269 0.731 25 N -0.127 5.127 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.161 0.839 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.670 -5.104 -0.982 6.362 hybrid contribution 0.112 1.434 -0.118 1.443 sum -3.558 -3.669 -1.100 5.228 Atomic orbital electron populations 1.20311 0.90833 1.01306 1.00825 1.20154 0.95233 0.87894 1.12410 1.21150 0.94762 0.97748 0.98616 1.21070 0.94027 0.97270 1.10805 1.19452 0.93824 0.90912 0.89757 1.19563 0.89789 1.06834 1.29315 0.87873 1.26332 0.94885 0.96495 0.96513 1.69653 1.09406 1.27044 1.33265 0.86273 0.80213 0.80188 0.79683 1.18911 1.20887 1.16548 1.19479 0.88149 0.88515 1.15089 1.18099 0.84790 0.92924 0.94138 1.20580 1.02135 0.90923 1.09067 1.18887 0.97697 0.94998 1.02752 1.20691 0.97266 0.91723 0.97257 1.21412 0.97046 1.00949 1.03516 1.22264 0.98184 0.89104 0.95653 1.66434 1.23057 1.06412 1.24640 1.18412 0.93210 0.86254 0.98699 1.42070 1.21426 1.08216 1.44459 0.73073 1.66812 1.08777 1.29123 1.07941 0.92916 0.92161 0.92643 0.87535 0.86949 0.89451 0.83861 0.85552 0.85489 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.13 36.00 0.36 -0.83 16 2 C -0.02 -0.34 6.77 -82.51 -0.56 -0.90 16 3 C -0.10 -2.06 9.58 -39.91 -0.38 -2.45 16 4 C -0.21 -4.58 7.23 -38.98 -0.28 -4.86 16 5 C 0.07 1.57 5.27 -104.47 -0.55 1.02 16 6 C -0.43 -10.40 7.71 -37.99 -0.29 -10.69 16 7 H 0.10 2.68 6.88 -52.49 -0.36 2.31 16 8 C 0.08 1.92 5.43 -17.32 -0.09 1.82 16 9 N -0.77 -18.45 13.93 55.55 0.77 -17.68 16 10 Si 0.91 18.59 24.53 -169.99 -4.17 14.42 16 11 H -0.26 -5.17 6.71 56.52 0.38 -4.79 16 12 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 13 H -0.24 -5.16 6.84 56.52 0.39 -4.78 16 14 C 0.03 0.67 6.87 -80.46 -0.55 0.12 16 15 C 0.21 4.65 6.31 -82.25 -0.52 4.13 16 16 C -0.20 -4.09 10.71 -39.08 -0.42 -4.50 16 17 C -0.14 -2.60 6.18 -106.89 -0.66 -3.27 16 18 C -0.04 -0.67 10.19 -39.27 -0.40 -1.07 16 19 C -0.21 -2.86 10.04 -39.83 -0.40 -3.26 16 20 C 0.12 1.77 11.15 -17.45 -0.19 1.57 16 21 N -0.49 -9.49 10.40 -12.17 -0.13 -9.61 16 22 C 0.27 5.54 8.41 -155.56 -1.31 4.23 16 23 N -0.56 -11.90 5.14 -8.77 -0.05 -11.94 16 24 H 0.43 9.15 7.46 -40.82 -0.30 8.84 16 25 N -0.42 -9.38 10.12 -4.42 -0.04 -9.42 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 29 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.11 2.40 4.82 -52.49 -0.25 2.15 16 31 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 32 H 0.14 2.69 8.06 -52.49 -0.42 2.27 16 33 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -27.10 298.84 -8.83 -35.93 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -3.47 Total: 12.74 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -6.25 Total: -18.93 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.56 Total: -48.66 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.17 Total: 14.42 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.10 -8.83 -35.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245400655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.638 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds