Wall clock time and date at job start Tue Mar 31 2020 00:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31152 * 119.78395 * 2 1 4 4 C 1.33293 * 121.68824 * 179.97438 * 3 2 1 5 5 C 1.47165 * 119.47136 * 179.97438 * 4 3 2 6 6 C 1.36155 * 125.42913 * 0.02562 * 5 4 3 7 7 C 1.41458 * 107.58945 * 179.97438 * 6 5 4 8 8 C 1.40183 * 133.69864 * 180.02562 * 7 6 5 9 9 C 1.37077 * 118.20234 * 179.97438 * 8 7 6 10 10 C 1.38694 * 119.63326 * 359.97438 * 9 8 7 11 11 N 1.31663 * 121.56891 * 0.02562 * 10 9 8 12 12 C 1.32626 * 121.56285 * 359.97438 * 11 10 9 13 13 N 1.37484 * 132.93706 * 180.29416 * 12 11 10 14 14 H 0.96998 * 125.53206 * 359.95904 * 13 12 11 15 15 C 1.40242 * 121.04920 * 0.02562 * 4 3 2 16 16 C 1.36421 * 119.45129 * 0.02562 * 15 4 3 17 17 C 1.41054 * 119.78550 * 180.02562 * 2 1 3 18 18 C 1.40870 * 120.53146 * 359.97438 * 17 2 1 19 19 H 1.08000 * 119.99986 * 334.59516 * 18 17 2 20 20 C 1.39980 * 120.00269 * 154.59339 * 18 17 2 21 21 N 1.30822 * 119.99861 * 343.62253 * 20 18 17 22 22 Si 1.86799 * 120.00442 * 163.62399 * 20 18 17 23 23 H 1.48496 * 109.47591 * 89.99835 * 22 20 18 24 24 H 1.48500 * 109.47205 * 210.00342 * 22 20 18 25 25 H 1.48505 * 109.46891 * 329.99628 * 22 20 18 26 26 H 1.09002 * 109.47057 * 269.98605 * 1 2 3 27 27 H 1.09000 * 109.47187 * 29.97480 * 1 2 3 28 28 H 1.08994 * 109.47127 * 149.98172 * 1 2 3 29 29 H 1.07996 * 126.20037 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.89411 * 359.97247 * 8 7 6 31 31 H 1.08005 * 120.18415 * 179.97438 * 9 8 7 32 32 H 1.08003 * 119.21494 * 180.02562 * 10 9 8 33 33 H 1.08001 * 120.27397 * 180.02562 * 15 4 3 34 34 H 1.08001 * 120.77682 * 180.25487 * 16 15 4 35 35 H 0.97002 * 120.00222 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1585 1.1383 0.0000 4 6 3.4907 1.1826 0.0005 5 6 4.1718 2.4871 -0.0001 6 6 3.5536 3.7003 -0.0007 7 6 4.5609 4.6934 -0.0005 8 6 4.5390 6.0950 -0.0004 9 6 5.7368 6.7616 0.0003 10 6 6.9223 6.0417 0.0014 11 7 6.9291 4.7251 0.0013 12 6 5.8027 4.0250 0.0007 13 7 5.5386 2.6758 0.0056 14 1 6.2050 1.9709 0.0103 15 6 4.2536 0.0058 0.0005 16 6 3.6216 -1.2032 -0.0005 17 6 2.2077 -1.2242 -0.0005 18 6 1.5102 -2.4480 -0.0006 19 1 0.5089 -2.4989 0.4011 20 6 2.1146 -3.5983 -0.5211 21 7 3.1705 -3.4931 -1.2863 22 14 1.4137 -5.2835 -0.1234 23 1 0.4026 -5.6532 -1.1462 24 1 2.5080 -6.2874 -0.1235 25 1 0.7733 -5.2496 1.2161 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5141 29 1 2.4875 3.8729 -0.0011 30 1 3.6037 6.6350 -0.0009 31 1 5.7573 7.8415 -0.0001 32 1 7.8621 6.5738 0.0024 33 1 5.3324 0.0563 0.0014 34 1 4.1880 -2.1228 0.0036 35 1 3.5897 -4.2901 -1.6468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245401468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:16 Heat of formation + Delta-G solvation = 82.734239 kcal Electronic energy + Delta-G solvation = -19927.339586 eV Core-core repulsion = 16889.765968 eV Total energy + Delta-G solvation = -3037.573618 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19239 -38.72844 -37.32833 -34.42410 -32.72905 -32.05279 -30.99762 -29.79753 -28.56419 -27.08811 -25.62591 -23.12112 -22.37786 -21.49923 -20.34682 -19.94681 -17.91468 -17.62428 -16.21111 -15.87272 -15.53540 -14.71434 -14.69626 -14.59690 -13.96981 -13.53415 -13.28475 -12.78847 -12.63198 -12.55159 -12.12777 -12.08520 -11.92776 -11.76758 -11.62416 -11.22378 -11.17773 -11.04972 -10.77907 -10.18023 -10.05123 -9.65033 -9.11565 -8.54072 -8.28889 -8.25095 -8.00424 -7.24706 -7.02036 -4.70387 1.16493 1.71133 2.23476 2.77525 2.83350 2.85807 2.91388 3.09999 3.49729 3.62201 4.23350 4.38797 4.83068 5.03868 5.16795 5.34164 5.36900 5.44081 5.56664 5.84301 5.95159 6.16133 6.20430 6.22799 6.34301 6.47776 6.53912 6.59062 6.64164 6.72820 6.86078 6.93642 7.05910 7.13537 7.35530 7.43832 7.57589 7.69710 7.76144 8.12557 8.32595 8.34427 8.42953 9.38585 9.71041 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039872 B = 0.003678 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.082290 B = 7610.158317 C = 8232.747884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.014 3.986 3 N -0.429 5.429 4 C 0.001 3.999 5 C 0.203 3.797 6 C -0.206 4.206 7 C -0.129 4.129 8 C -0.046 4.046 9 C -0.203 4.203 10 C 0.111 3.889 11 N -0.495 5.495 12 C 0.265 3.735 13 N -0.575 5.575 14 H 0.417 0.583 15 C -0.125 4.125 16 C -0.140 4.140 17 C 0.076 3.924 18 C -0.421 4.421 19 H 0.093 0.907 20 C 0.070 3.930 21 N -0.770 5.770 22 Si 0.917 3.083 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.256 1.256 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 7.077 1.516 7.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.134 4.134 3 N -0.138 5.138 4 C -0.133 4.133 5 C 0.094 3.906 6 C -0.230 4.230 7 C -0.136 4.136 8 C -0.072 4.072 9 C -0.225 4.225 10 C -0.055 4.055 11 N -0.208 5.208 12 C 0.031 3.969 13 N -0.182 5.182 14 H 0.255 0.745 15 C -0.146 4.146 16 C -0.165 4.165 17 C 0.071 3.929 18 C -0.449 4.449 19 H 0.111 0.889 20 C -0.152 4.152 21 N -0.393 5.393 22 Si 0.740 3.260 23 H -0.189 1.189 24 H -0.197 1.197 25 H -0.179 1.179 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.170 0.830 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.351 7.081 1.362 7.584 hybrid contribution 0.081 -1.518 0.011 1.520 sum 2.431 5.563 1.374 6.225 Atomic orbital electron populations 1.20276 0.90605 1.01489 1.00624 1.20997 0.95254 0.87600 1.09502 1.66623 1.07690 1.30540 1.08958 1.17700 0.89306 0.87978 1.18300 1.18553 0.79784 0.94087 0.98209 1.20578 0.98689 0.89046 1.14708 1.18960 0.94353 0.94050 1.06273 1.20727 0.98357 0.91889 0.96258 1.21437 0.93373 1.00664 1.07016 1.22245 0.97894 0.87687 0.97705 1.66406 1.29106 1.08758 1.16569 1.18332 0.90355 0.84792 1.03417 1.41678 1.06970 1.04566 1.64995 0.74523 1.21159 0.97966 0.93718 1.01748 1.21226 0.94714 0.96490 1.04036 1.18453 0.92466 0.93284 0.88699 1.19740 1.01787 0.91901 1.31486 0.88925 1.26159 0.94167 1.02378 0.92463 1.69785 1.16645 1.32902 1.19933 0.86141 0.79676 0.79586 0.80613 1.18927 1.19723 1.17933 0.93074 0.92867 0.91344 0.83392 0.85380 0.85370 0.83041 0.88843 0.85463 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 9.57 36.01 0.34 -1.06 16 2 C 0.01 0.33 6.86 -81.81 -0.56 -0.23 16 3 N -0.43 -10.11 9.90 -5.48 -0.05 -10.16 16 4 C 0.00 0.03 6.75 -82.86 -0.56 -0.53 16 5 C 0.20 4.16 6.87 -82.22 -0.57 3.59 16 6 C -0.21 -4.00 10.50 -39.11 -0.41 -4.42 16 7 C -0.13 -2.32 6.18 -106.88 -0.66 -2.98 16 8 C -0.05 -0.67 10.19 -39.27 -0.40 -1.07 16 9 C -0.20 -2.56 10.04 -39.83 -0.40 -2.96 16 10 C 0.11 1.52 11.15 -17.46 -0.19 1.33 16 11 N -0.50 -8.47 10.40 -12.18 -0.13 -8.60 16 12 C 0.26 4.89 8.41 -155.57 -1.31 3.59 16 13 N -0.58 -10.60 6.02 -8.75 -0.05 -10.65 16 14 H 0.42 6.81 7.93 -40.82 -0.32 6.48 16 15 C -0.12 -2.78 9.65 -39.48 -0.38 -3.16 16 16 C -0.14 -3.35 8.71 -39.03 -0.34 -3.69 16 17 C 0.08 1.85 5.58 -106.63 -0.59 1.26 16 18 C -0.42 -9.74 8.13 -37.93 -0.31 -10.04 16 19 H 0.09 2.00 6.86 -52.49 -0.36 1.64 16 20 C 0.07 1.54 5.18 -17.33 -0.09 1.45 16 21 N -0.77 -17.64 10.96 55.55 0.61 -17.04 16 22 Si 0.92 16.30 29.59 -169.99 -5.03 11.27 16 23 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 24 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 25 H -0.26 -4.52 7.11 56.52 0.40 -4.11 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.28 6.76 -51.93 -0.35 0.93 16 29 H 0.15 2.80 8.06 -52.49 -0.42 2.37 16 30 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 31 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.09 1.80 7.04 -52.49 -0.37 1.43 16 34 H 0.13 3.06 6.28 -52.49 -0.33 2.73 16 35 H 0.29 5.97 8.30 -40.82 -0.34 5.64 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -27.19 303.62 -9.91 -37.11 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -3.41 Total: 12.43 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -6.43 Total: -18.93 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.38 Total: -46.45 kcal Atomic # 14 Polarization: 16.30 SS G_CDS: -5.03 Total: 11.27 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.19 -9.91 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245401468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.841 kcal (2) G-P(sol) polarization free energy of solvation -27.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds