Wall clock time and date at job start Tue Mar 31 2020 00:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31152 * 119.78395 * 2 1 4 4 C 1.33293 * 121.68824 * 179.97438 * 3 2 1 5 5 C 1.47165 * 119.47136 * 179.97438 * 4 3 2 6 6 C 1.36155 * 125.42913 * 0.02562 * 5 4 3 7 7 C 1.41458 * 107.58945 * 179.97438 * 6 5 4 8 8 C 1.40183 * 133.69864 * 180.02562 * 7 6 5 9 9 C 1.37077 * 118.20234 * 179.97438 * 8 7 6 10 10 C 1.38694 * 119.63326 * 359.97438 * 9 8 7 11 11 N 1.31663 * 121.56891 * 0.02562 * 10 9 8 12 12 C 1.32626 * 121.56285 * 359.97438 * 11 10 9 13 13 N 1.37484 * 132.93706 * 180.29416 * 12 11 10 14 14 H 0.96998 * 125.53206 * 359.95904 * 13 12 11 15 15 C 1.40242 * 121.04920 * 0.02562 * 4 3 2 16 16 C 1.36421 * 119.45129 * 0.02562 * 15 4 3 17 17 C 1.41054 * 119.78550 * 180.02562 * 2 1 3 18 18 C 1.40870 * 120.53146 * 359.97438 * 17 2 1 19 19 H 1.08000 * 119.99986 * 334.59516 * 18 17 2 20 20 C 1.39980 * 120.00269 * 154.59339 * 18 17 2 21 21 N 1.30822 * 119.99861 * 343.62253 * 20 18 17 22 22 Si 1.86799 * 120.00442 * 163.62399 * 20 18 17 23 23 H 1.48496 * 109.47591 * 89.99835 * 22 20 18 24 24 H 1.48500 * 109.47205 * 210.00342 * 22 20 18 25 25 H 1.48505 * 109.46891 * 329.99628 * 22 20 18 26 26 H 1.09002 * 109.47057 * 269.98605 * 1 2 3 27 27 H 1.09000 * 109.47187 * 29.97480 * 1 2 3 28 28 H 1.08994 * 109.47127 * 149.98172 * 1 2 3 29 29 H 1.07996 * 126.20037 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.89411 * 359.97247 * 8 7 6 31 31 H 1.08005 * 120.18415 * 179.97438 * 9 8 7 32 32 H 1.08003 * 119.21494 * 180.02562 * 10 9 8 33 33 H 1.08001 * 120.27397 * 180.02562 * 15 4 3 34 34 H 1.08001 * 120.77682 * 180.25487 * 16 15 4 35 35 H 0.97002 * 120.00222 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1585 1.1383 0.0000 4 6 3.4907 1.1826 0.0005 5 6 4.1718 2.4871 -0.0001 6 6 3.5536 3.7003 -0.0007 7 6 4.5609 4.6934 -0.0005 8 6 4.5390 6.0950 -0.0004 9 6 5.7368 6.7616 0.0003 10 6 6.9223 6.0417 0.0014 11 7 6.9291 4.7251 0.0013 12 6 5.8027 4.0250 0.0007 13 7 5.5386 2.6758 0.0056 14 1 6.2050 1.9709 0.0103 15 6 4.2536 0.0058 0.0005 16 6 3.6216 -1.2032 -0.0005 17 6 2.2077 -1.2242 -0.0005 18 6 1.5102 -2.4480 -0.0006 19 1 0.5089 -2.4989 0.4011 20 6 2.1146 -3.5983 -0.5211 21 7 3.1705 -3.4931 -1.2863 22 14 1.4137 -5.2835 -0.1234 23 1 0.4026 -5.6532 -1.1462 24 1 2.5080 -6.2874 -0.1235 25 1 0.7733 -5.2496 1.2161 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5141 29 1 2.4875 3.8729 -0.0011 30 1 3.6037 6.6350 -0.0009 31 1 5.7573 7.8415 -0.0001 32 1 7.8621 6.5738 0.0024 33 1 5.3324 0.0563 0.0014 34 1 4.1880 -2.1228 0.0036 35 1 3.5897 -4.2901 -1.6468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245401468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:16 Heat of formation + Delta-G solvation = 68.717623 kcal Electronic energy + Delta-G solvation = -19927.947392 eV Core-core repulsion = 16889.765968 eV Total energy + Delta-G solvation = -3038.181424 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.52290 -40.39847 -38.63641 -36.10298 -33.98164 -33.71072 -32.70884 -31.08290 -30.00253 -28.74015 -27.16835 -24.61255 -23.67155 -23.02849 -21.96554 -21.44395 -19.35035 -19.23914 -17.59475 -17.41647 -16.84778 -16.27719 -16.07784 -15.95665 -15.49663 -14.99183 -14.93061 -14.21647 -14.00647 -13.88570 -13.61883 -13.49475 -13.45396 -13.39838 -12.98630 -12.72213 -12.65363 -12.64695 -12.22166 -11.72288 -11.44633 -11.25990 -10.31517 -10.30533 -10.03356 -9.81954 -9.33786 -8.87458 -8.59281 -6.44718 -0.17254 0.53220 0.67947 1.00474 1.38785 1.43470 1.54592 1.75061 1.95373 2.13911 2.71512 3.03128 3.61097 3.64092 3.69402 3.86239 4.07335 4.20081 4.32667 4.41198 4.51711 4.57584 4.74313 4.89528 4.96001 4.99521 5.01883 5.04796 5.11149 5.21277 5.41731 5.45123 5.61107 5.65417 5.68946 5.87036 5.96195 6.08321 6.37444 6.40984 6.61595 6.68684 7.10871 7.62387 8.09814 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039872 B = 0.003678 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.082290 B = 7610.158317 C = 8232.747884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.006 4.006 3 N -0.445 5.445 4 C -0.004 4.004 5 C 0.168 3.832 6 C -0.200 4.200 7 C -0.159 4.159 8 C -0.044 4.044 9 C -0.190 4.190 10 C 0.122 3.878 11 N -0.523 5.523 12 C 0.246 3.754 13 N -0.573 5.573 14 H 0.420 0.580 15 C -0.132 4.132 16 C -0.161 4.161 17 C 0.047 3.953 18 C -0.444 4.444 19 H 0.102 0.898 20 C 0.033 3.967 21 N -0.803 5.803 22 Si 0.990 3.010 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.252 1.252 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.176 0.824 32 H 0.194 0.806 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 9.172 1.754 9.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.153 4.153 3 N -0.154 5.154 4 C -0.138 4.138 5 C 0.059 3.941 6 C -0.225 4.225 7 C -0.166 4.166 8 C -0.070 4.070 9 C -0.211 4.211 10 C -0.045 4.045 11 N -0.237 5.237 12 C 0.014 3.986 13 N -0.180 5.180 14 H 0.259 0.741 15 C -0.153 4.153 16 C -0.186 4.186 17 C 0.042 3.958 18 C -0.472 4.472 19 H 0.120 0.880 20 C -0.185 4.185 21 N -0.427 5.427 22 Si 0.809 3.191 23 H -0.182 1.182 24 H -0.193 1.193 25 H -0.176 1.176 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.193 0.807 32 H 0.211 0.789 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.682 9.176 1.599 9.692 hybrid contribution 0.154 -1.793 -0.076 1.801 sum 2.836 7.383 1.523 8.054 Atomic orbital electron populations 1.20281 0.88214 1.02075 1.01735 1.21601 0.97088 0.87394 1.09212 1.66705 1.08195 1.30681 1.09806 1.18098 0.89399 0.89190 1.17155 1.18357 0.80829 0.93457 1.01478 1.20698 0.98968 0.89507 1.13328 1.19184 0.93484 0.95618 1.08346 1.21193 1.00653 0.90480 0.94678 1.21960 0.91901 1.02943 1.04283 1.23173 1.00343 0.86769 0.94213 1.66519 1.28609 1.10397 1.18139 1.18592 0.91252 0.84694 1.04059 1.41595 1.06304 1.05197 1.64923 0.74079 1.21373 0.99155 0.93304 1.01419 1.21270 0.95099 0.96682 1.05564 1.18797 0.92887 0.94373 0.89701 1.20012 1.02488 0.92335 1.32386 0.87996 1.27019 0.94202 1.05713 0.91603 1.69833 1.17854 1.34290 1.20703 0.85062 0.78950 0.74667 0.80403 1.18225 1.19275 1.17577 0.91583 0.91934 0.90962 0.83613 0.82684 0.80666 0.78931 0.86767 0.86393 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.57 9.57 71.24 0.68 -1.89 16 2 C -0.01 -0.29 6.86 43.35 0.30 0.00 16 3 N -0.44 -21.69 9.90 -171.24 -1.69 -23.39 16 4 C 0.00 -0.19 6.75 41.75 0.28 0.09 16 5 C 0.17 7.09 6.87 40.04 0.28 7.37 16 6 C -0.20 -7.87 10.50 22.58 0.24 -7.64 16 7 C -0.16 -5.55 6.18 -21.33 -0.13 -5.68 16 8 C -0.04 -1.12 10.19 22.47 0.23 -0.90 16 9 C -0.19 -3.84 10.04 22.11 0.22 -3.61 16 10 C 0.12 2.82 11.15 84.83 0.95 3.77 16 11 N -0.52 -16.81 10.40 -192.44 -2.00 -18.81 16 12 C 0.25 8.94 8.41 133.97 1.13 10.07 16 13 N -0.57 -21.59 6.02 -181.60 -1.09 -22.68 16 14 H 0.42 14.25 7.93 -92.71 -0.74 13.51 16 15 C -0.13 -6.16 9.65 22.33 0.22 -5.94 16 16 C -0.16 -8.13 8.71 22.63 0.20 -7.93 16 17 C 0.05 2.40 5.58 -21.16 -0.12 2.29 16 18 C -0.44 -21.11 8.13 23.34 0.19 -20.92 16 19 H 0.10 4.46 6.86 -2.91 -0.02 4.44 16 20 C 0.03 1.49 5.18 85.27 0.44 1.93 16 21 N -0.80 -37.93 10.96 21.83 0.24 -37.69 16 22 Si 0.99 33.36 29.59 68.60 2.03 35.39 16 23 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 24 H -0.27 -8.76 7.11 99.48 0.71 -8.06 16 25 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 2.72 6.76 -2.39 -0.02 2.71 16 29 H 0.15 5.61 8.06 -2.91 -0.02 5.59 16 30 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 33 H 0.11 4.63 7.04 -2.91 -0.02 4.61 16 34 H 0.12 6.02 6.28 -2.91 -0.02 6.00 16 35 H 0.30 12.54 8.30 -92.71 -0.77 11.78 16 Total: -1.00 -61.52 303.62 2.98 -58.54 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.41 Total: 37.64 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 5.09 Total: -28.99 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -4.55 Total: -102.57 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.39 kcal Total: -61.52 2.98 -58.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245401468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.255 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds