Wall clock time and date at job start Tue Mar 31 2020 01:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39808 * 125.36173 * 2 1 4 4 C 1.30218 * 110.12843 * 180.02562 * 3 2 1 5 5 C 1.45959 * 107.61612 * 0.02562 * 4 3 2 6 6 C 1.39744 * 134.10326 * 180.02562 * 5 4 3 7 7 C 1.39452 * 117.94422 * 180.02562 * 6 5 4 8 8 C 1.47969 * 120.40787 * 180.02562 * 7 6 5 9 9 C 1.39953 * 119.88664 * 359.72103 * 8 7 6 10 10 C 1.36239 * 120.11975 * 179.72056 * 9 8 7 11 11 C 1.40932 * 119.88197 * 0.55516 * 10 9 8 12 12 C 1.41012 * 120.12011 * 179.70043 * 11 10 9 13 13 H 1.08006 * 119.99902 * 24.70058 * 12 11 10 14 14 C 1.39990 * 120.00120 * 204.70744 * 12 11 10 15 15 N 1.30808 * 120.00094 * 17.96091 * 14 12 11 16 16 Si 1.86801 * 119.99821 * 197.96666 * 14 12 11 17 17 H 1.48496 * 109.47185 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46976 * 119.99536 * 16 14 12 19 19 H 1.48500 * 109.47408 * 239.99650 * 16 14 12 20 20 C 1.40936 * 119.76475 * 359.71712 * 11 10 9 21 21 C 1.36245 * 119.88184 * 0.02562 * 20 11 10 22 22 C 1.40157 * 119.18406 * 0.26977 * 7 6 5 23 23 N 1.31236 * 121.37378 * 359.42200 * 22 7 6 24 24 C 1.32896 * 121.84378 * 0.59727 * 23 22 7 25 25 H 1.08998 * 109.47570 * 269.96420 * 1 2 3 26 26 H 1.08997 * 109.46863 * 29.96268 * 1 2 3 27 27 H 1.08998 * 109.46752 * 149.95903 * 1 2 3 28 28 H 1.07994 * 126.19138 * 180.02562 * 4 3 2 29 29 H 1.07997 * 121.03358 * 359.97360 * 6 5 4 30 30 H 1.07997 * 119.93514 * 359.97438 * 9 8 7 31 31 H 1.08005 * 120.05332 * 180.25514 * 10 9 8 32 32 H 0.97002 * 120.00107 * 180.02562 * 15 14 12 33 33 H 1.07998 * 120.06205 * 179.97438 * 20 11 10 34 34 H 1.08001 * 119.94335 * 180.02562 * 21 20 11 35 35 H 1.07998 * 119.31529 * 179.73053 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2741 1.1402 0.0000 4 6 3.5305 0.7980 -0.0005 5 6 3.5912 -0.6603 -0.0016 6 6 4.6343 -1.5903 -0.0020 7 6 4.3022 -2.9447 -0.0036 8 6 5.3633 -3.9760 -0.0036 9 6 6.7091 -3.5919 -0.0079 10 6 7.6899 -4.5374 -0.0021 11 6 7.3474 -5.9045 -0.0037 12 6 8.3585 -6.8873 -0.0041 13 1 9.3378 -6.6548 0.3875 14 6 8.0931 -8.1645 -0.5123 15 7 7.0607 -8.3564 -1.2923 16 14 9.2130 -9.5945 -0.0762 17 1 10.3013 -9.1173 0.8143 18 1 8.4270 -10.6441 0.6207 19 1 9.8014 -10.1589 -1.3174 20 6 5.9906 -6.2858 -0.0051 21 6 5.0175 -5.3322 -0.0056 22 6 2.9510 -3.3171 -0.0104 23 7 1.9946 -2.4185 -0.0040 24 6 2.2567 -1.1156 -0.0026 25 1 -0.3634 -0.0006 1.0276 26 1 -0.3633 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 4.3748 1.4714 -0.0003 29 1 5.6657 -1.2701 -0.0020 30 1 6.9704 -2.5440 -0.0116 31 1 8.7281 -4.2398 -0.0013 32 1 6.8766 -9.2415 -1.6442 33 1 5.7226 -7.3320 -0.0067 34 1 3.9774 -5.6233 -0.0063 35 1 2.6915 -4.3654 -0.0161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245471499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:29 Heat of formation + Delta-G solvation = 116.331253 kcal Electronic energy + Delta-G solvation = -19743.042589 eV Core-core repulsion = 16706.925847 eV Total energy + Delta-G solvation = -3036.116742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -41.17715 -38.38466 -37.10062 -34.17723 -33.48544 -31.76456 -30.61762 -29.46793 -28.76377 -26.72038 -25.07440 -23.82228 -22.39135 -21.02441 -20.36488 -20.21093 -17.70799 -17.22755 -16.51741 -16.02382 -15.59992 -15.22742 -14.55581 -14.16949 -13.72575 -13.49419 -13.33933 -13.15136 -12.87402 -12.67906 -12.32149 -12.19923 -11.94000 -11.72331 -11.40714 -11.24041 -11.06285 -10.86001 -10.62028 -10.10368 -9.87268 -9.62963 -9.35671 -9.00713 -8.74228 -8.32158 -7.70712 -7.08961 -6.92727 -4.49037 1.06642 1.44046 2.34613 2.63884 2.70163 2.96239 3.00638 3.01536 3.11761 3.76512 4.14044 4.38793 4.55171 4.57837 4.86499 5.13763 5.22450 5.33836 5.38663 5.46922 5.57383 5.68442 5.81666 6.00838 6.11944 6.27198 6.45227 6.55940 6.76834 6.86092 6.87936 7.06583 7.12982 7.20786 7.44230 7.62936 7.73602 7.86977 7.94554 8.08444 8.26221 8.42723 8.65872 8.77454 9.92476 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.048249 B = 0.003330 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.184314 B = 8405.754601 C = 8902.769516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.404 5.404 3 N -0.250 5.250 4 C 0.075 3.925 5 C -0.209 4.209 6 C -0.040 4.040 7 C -0.061 4.061 8 C -0.197 4.197 9 C -0.063 4.063 10 C -0.228 4.228 11 C 0.118 3.882 12 C -0.444 4.444 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.776 5.776 16 Si 0.911 3.089 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.272 1.272 20 C -0.170 4.170 21 C -0.077 4.077 22 C 0.153 3.847 23 N -0.501 5.501 24 C 0.278 3.722 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.197 0.803 29 H 0.136 0.864 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.285 0.715 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 8.395 1.531 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.198 5.198 3 N -0.062 5.062 4 C -0.124 4.124 5 C -0.219 4.219 6 C -0.068 4.068 7 C -0.065 4.065 8 C -0.199 4.199 9 C -0.082 4.082 10 C -0.248 4.248 11 C 0.115 3.885 12 C -0.472 4.472 13 H 0.101 0.899 14 C -0.147 4.147 15 N -0.399 5.399 16 Si 0.735 3.265 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.198 1.198 20 C -0.189 4.189 21 C -0.096 4.096 22 C -0.016 4.016 23 N -0.215 5.215 24 C 0.041 3.959 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.213 0.787 29 H 0.154 0.846 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.922 8.993 1.380 12.064 hybrid contribution 1.765 -1.097 0.039 2.078 sum -6.157 7.897 1.419 10.113 Atomic orbital electron populations 1.21656 0.74236 1.03828 1.02622 1.47816 1.05650 1.00141 1.66157 1.76535 1.02831 1.08084 1.18783 1.24962 0.94593 0.93104 0.99698 1.20412 0.94313 0.94137 1.13003 1.21010 0.98006 0.90938 0.96869 1.19706 0.94246 0.93090 0.99452 1.17797 0.90948 0.91221 1.19941 1.20346 0.92251 0.97217 0.98349 1.20672 0.97168 0.93219 1.13728 1.17742 0.92832 0.91502 0.86405 1.19762 0.98913 0.94844 1.33693 0.89892 1.26040 0.95634 1.00483 0.92542 1.69821 1.24884 1.24622 1.20604 0.86202 0.80657 0.80160 0.79493 1.18160 1.19435 1.19755 1.20993 0.92399 0.98765 1.06721 1.20481 0.97579 0.92129 0.99381 1.22869 0.87601 0.97820 0.93292 1.66547 1.38094 0.98623 1.18235 1.18884 0.88479 0.88022 1.00508 0.91754 0.90031 0.89575 0.78680 0.84603 0.88965 0.88669 0.90403 0.86280 0.88920 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.31 11.43 59.85 0.68 2.00 16 2 N -0.40 -6.24 4.04 -67.16 -0.27 -6.51 16 3 N -0.25 -3.72 12.39 31.87 0.39 -3.32 16 4 C 0.07 1.02 12.29 -15.15 -0.19 0.84 16 5 C -0.21 -3.44 6.36 -105.19 -0.67 -4.11 16 6 C -0.04 -0.67 9.58 -38.57 -0.37 -1.04 16 7 C -0.06 -1.14 5.89 -104.74 -0.62 -1.75 16 8 C -0.20 -4.10 5.90 -104.62 -0.62 -4.72 16 9 C -0.06 -1.32 9.36 -39.66 -0.37 -1.69 16 10 C -0.23 -5.20 9.73 -39.28 -0.38 -5.58 16 11 C 0.12 2.93 5.57 -106.81 -0.60 2.33 16 12 C -0.44 -10.91 9.03 -37.88 -0.34 -11.25 16 13 H 0.08 1.95 7.91 -52.48 -0.42 1.54 16 14 C 0.07 1.70 5.13 -17.33 -0.09 1.61 16 15 N -0.78 -18.59 10.96 55.55 0.61 -17.98 16 16 Si 0.91 17.25 29.60 -169.99 -5.03 12.22 16 17 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 20 C -0.17 -4.08 8.63 -39.28 -0.34 -4.42 16 21 C -0.08 -1.67 9.37 -39.65 -0.37 -2.04 16 22 C 0.15 2.70 10.58 -17.09 -0.18 2.52 16 23 N -0.50 -8.97 10.37 -12.01 -0.12 -9.10 16 24 C 0.28 4.85 7.96 -155.99 -1.24 3.60 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.14 2.00 6.29 -52.49 -0.33 1.67 16 30 H 0.09 1.65 6.23 -52.49 -0.33 1.32 16 31 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 32 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 33 H 0.12 2.95 6.16 -52.49 -0.32 2.62 16 34 H 0.09 1.76 6.18 -52.49 -0.32 1.43 16 35 H 0.16 2.60 6.17 -52.49 -0.32 2.28 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -28.10 303.27 -8.83 -36.93 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.29 Total: 6.91 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -5.69 Total: -23.71 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.61 Total: -36.91 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.10 -8.83 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245471499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.262 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds