Wall clock time and date at job start Tue Mar 31 2020 01:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39808 * 125.36173 * 2 1 4 4 C 1.30218 * 110.12843 * 180.02562 * 3 2 1 5 5 C 1.45959 * 107.61612 * 0.02562 * 4 3 2 6 6 C 1.39744 * 134.10326 * 180.02562 * 5 4 3 7 7 C 1.39452 * 117.94422 * 180.02562 * 6 5 4 8 8 C 1.47969 * 120.40787 * 180.02562 * 7 6 5 9 9 C 1.39953 * 119.88664 * 359.72103 * 8 7 6 10 10 C 1.36239 * 120.11975 * 179.72056 * 9 8 7 11 11 C 1.40932 * 119.88197 * 0.55516 * 10 9 8 12 12 C 1.41012 * 120.12011 * 179.70043 * 11 10 9 13 13 H 1.08006 * 119.99902 * 24.70058 * 12 11 10 14 14 C 1.39990 * 120.00120 * 204.70744 * 12 11 10 15 15 N 1.30808 * 120.00094 * 17.96091 * 14 12 11 16 16 Si 1.86801 * 119.99821 * 197.96666 * 14 12 11 17 17 H 1.48496 * 109.47185 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46976 * 119.99536 * 16 14 12 19 19 H 1.48500 * 109.47408 * 239.99650 * 16 14 12 20 20 C 1.40936 * 119.76475 * 359.71712 * 11 10 9 21 21 C 1.36245 * 119.88184 * 0.02562 * 20 11 10 22 22 C 1.40157 * 119.18406 * 0.26977 * 7 6 5 23 23 N 1.31236 * 121.37378 * 359.42200 * 22 7 6 24 24 C 1.32896 * 121.84378 * 0.59727 * 23 22 7 25 25 H 1.08998 * 109.47570 * 269.96420 * 1 2 3 26 26 H 1.08997 * 109.46863 * 29.96268 * 1 2 3 27 27 H 1.08998 * 109.46752 * 149.95903 * 1 2 3 28 28 H 1.07994 * 126.19138 * 180.02562 * 4 3 2 29 29 H 1.07997 * 121.03358 * 359.97360 * 6 5 4 30 30 H 1.07997 * 119.93514 * 359.97438 * 9 8 7 31 31 H 1.08005 * 120.05332 * 180.25514 * 10 9 8 32 32 H 0.97002 * 120.00107 * 180.02562 * 15 14 12 33 33 H 1.07998 * 120.06205 * 179.97438 * 20 11 10 34 34 H 1.08001 * 119.94335 * 180.02562 * 21 20 11 35 35 H 1.07998 * 119.31529 * 179.73053 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2741 1.1402 0.0000 4 6 3.5305 0.7980 -0.0005 5 6 3.5912 -0.6603 -0.0016 6 6 4.6343 -1.5903 -0.0020 7 6 4.3022 -2.9447 -0.0036 8 6 5.3633 -3.9760 -0.0036 9 6 6.7091 -3.5919 -0.0079 10 6 7.6899 -4.5374 -0.0021 11 6 7.3474 -5.9045 -0.0037 12 6 8.3585 -6.8873 -0.0041 13 1 9.3378 -6.6548 0.3875 14 6 8.0931 -8.1645 -0.5123 15 7 7.0607 -8.3564 -1.2923 16 14 9.2130 -9.5945 -0.0762 17 1 10.3013 -9.1173 0.8143 18 1 8.4270 -10.6441 0.6207 19 1 9.8014 -10.1589 -1.3174 20 6 5.9906 -6.2858 -0.0051 21 6 5.0175 -5.3322 -0.0056 22 6 2.9510 -3.3171 -0.0104 23 7 1.9946 -2.4185 -0.0040 24 6 2.2567 -1.1156 -0.0026 25 1 -0.3634 -0.0006 1.0276 26 1 -0.3633 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 4.3748 1.4714 -0.0003 29 1 5.6657 -1.2701 -0.0020 30 1 6.9704 -2.5440 -0.0116 31 1 8.7281 -4.2398 -0.0013 32 1 6.8766 -9.2415 -1.6442 33 1 5.7226 -7.3320 -0.0067 34 1 3.9774 -5.6233 -0.0063 35 1 2.6915 -4.3654 -0.0161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245471499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:28 Heat of formation + Delta-G solvation = 102.600708 kcal Electronic energy + Delta-G solvation = -19743.637991 eV Core-core repulsion = 16706.925847 eV Total energy + Delta-G solvation = -3036.712143 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41393 -39.88562 -38.58798 -35.80155 -34.71219 -33.18533 -32.06544 -31.07856 -30.27813 -27.90854 -26.59612 -25.17175 -23.85275 -22.52438 -21.83998 -21.60918 -19.33856 -18.53766 -17.86954 -17.55113 -16.77457 -16.75056 -15.91376 -15.67054 -15.07457 -14.87703 -14.65977 -14.47999 -14.34124 -14.05320 -13.62109 -13.47390 -13.35767 -13.20966 -12.98550 -12.75236 -12.64288 -12.30097 -11.99306 -11.53396 -11.48345 -11.29451 -10.99385 -10.39192 -10.05208 -9.72723 -9.43336 -8.74520 -8.53033 -6.28321 -0.18973 0.01324 1.12933 1.24405 1.24701 1.40750 1.49233 1.54831 1.58003 2.19976 2.61704 3.00056 3.23910 3.36978 3.71394 3.81634 3.91273 4.00828 4.29863 4.37045 4.40282 4.48920 4.58248 4.61947 4.64425 4.79371 5.06076 5.06660 5.17029 5.33217 5.38604 5.48378 5.60591 5.72152 5.84864 6.05333 6.10929 6.23487 6.35079 6.45552 6.67336 6.89910 6.93369 7.03019 8.26681 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.048249 B = 0.003330 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.184314 B = 8405.754601 C = 8902.769516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.411 5.411 3 N -0.261 5.261 4 C 0.093 3.907 5 C -0.228 4.228 6 C -0.018 4.018 7 C -0.091 4.091 8 C -0.183 4.183 9 C -0.068 4.068 10 C -0.242 4.242 11 C 0.086 3.914 12 C -0.486 4.486 13 H 0.080 0.920 14 C 0.036 3.964 15 N -0.813 5.813 16 Si 0.982 3.018 17 H -0.257 1.257 18 H -0.264 1.264 19 H -0.266 1.266 20 C -0.192 4.192 21 C -0.085 4.085 22 C 0.152 3.848 23 N -0.514 5.514 24 C 0.265 3.735 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.241 0.759 29 H 0.160 0.840 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.291 0.709 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 10.683 1.755 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.204 5.204 3 N -0.073 5.073 4 C -0.106 4.106 5 C -0.237 4.237 6 C -0.046 4.046 7 C -0.094 4.094 8 C -0.185 4.185 9 C -0.086 4.086 10 C -0.262 4.262 11 C 0.083 3.917 12 C -0.514 4.514 13 H 0.098 0.902 14 C -0.181 4.181 15 N -0.437 5.437 16 Si 0.803 3.197 17 H -0.180 1.180 18 H -0.189 1.189 19 H -0.191 1.191 20 C -0.211 4.211 21 C -0.104 4.104 22 C -0.016 4.016 23 N -0.229 5.229 24 C 0.027 3.973 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.106 0.894 28 H 0.257 0.743 29 H 0.177 0.823 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.432 11.312 1.606 14.200 hybrid contribution 1.657 -1.439 -0.025 2.195 sum -6.775 9.873 1.581 12.078 Atomic orbital electron populations 1.21942 0.72268 1.05012 1.03829 1.48244 1.06978 0.99594 1.65535 1.76565 1.03387 1.07959 1.19361 1.25681 0.95359 0.92168 0.97359 1.20721 0.93778 0.95721 1.13505 1.21277 0.99351 0.90176 0.93835 1.19603 0.93878 0.93439 1.02527 1.18055 0.91784 0.91383 1.17282 1.20676 0.91812 0.98613 0.97521 1.20881 0.98206 0.92997 1.14098 1.18079 0.93316 0.92719 0.87587 1.19947 0.99088 0.96349 1.36022 0.90197 1.26809 0.97018 1.02452 0.91830 1.69864 1.26640 1.25488 1.21754 0.85154 0.78621 0.76735 0.79237 1.18048 1.18888 1.19064 1.20962 0.93017 0.98559 1.08600 1.20742 0.98248 0.92470 0.98903 1.23018 0.87492 0.98426 0.92642 1.66584 1.38075 0.99097 1.19131 1.19313 0.89815 0.88357 0.99776 0.90520 0.87887 0.89427 0.74270 0.82255 0.85552 0.87946 0.89814 0.87951 0.86852 0.81034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.16 11.43 127.77 1.46 3.63 16 2 N -0.41 -11.55 4.04 -366.39 -1.48 -13.03 16 3 N -0.26 -6.84 12.39 -53.08 -0.66 -7.50 16 4 C 0.09 2.13 12.29 86.93 1.07 3.20 16 5 C -0.23 -6.74 6.36 -20.24 -0.13 -6.87 16 6 C -0.02 -0.56 9.58 22.93 0.22 -0.34 16 7 C -0.09 -3.19 5.89 -19.94 -0.12 -3.31 16 8 C -0.18 -7.45 5.90 -19.87 -0.12 -7.57 16 9 C -0.07 -2.76 9.36 22.22 0.21 -2.55 16 10 C -0.24 -11.18 9.73 22.46 0.22 -10.96 16 11 C 0.09 4.41 5.57 -21.28 -0.12 4.29 16 12 C -0.49 -24.97 9.03 23.37 0.21 -24.76 16 13 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 14 C 0.04 1.71 5.13 85.27 0.44 2.15 16 15 N -0.81 -40.62 10.96 21.83 0.24 -40.38 16 16 Si 0.98 36.32 29.60 68.60 2.03 38.35 16 17 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 18 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 19 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 20 C -0.19 -9.64 8.63 22.47 0.19 -9.44 16 21 C -0.09 -3.74 9.37 22.22 0.21 -3.53 16 22 C 0.15 5.20 10.58 85.25 0.90 6.10 16 23 N -0.51 -17.61 10.37 -191.90 -1.99 -19.60 16 24 C 0.27 8.62 7.96 134.12 1.07 9.69 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 28 H 0.24 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.16 4.00 6.29 -2.91 -0.02 3.98 16 30 H 0.13 4.13 6.23 -2.91 -0.02 4.11 16 31 H 0.10 4.42 8.06 -2.91 -0.02 4.39 16 32 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 33 H 0.10 5.38 6.16 -2.91 -0.02 5.36 16 34 H 0.11 4.33 6.18 -2.91 -0.02 4.31 16 35 H 0.17 5.36 6.17 -2.91 -0.02 5.34 16 Total: -1.00 -62.24 303.27 4.99 -57.25 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 1.13 Total: 25.20 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 5.71 Total: -40.29 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.89 Total: -80.51 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -62.24 4.99 -57.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245471499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.849 kcal (2) G-P(sol) polarization free energy of solvation -62.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds