Wall clock time and date at job start Tue Mar 31 2020 01:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36200 * 124.88751 * 2 1 4 4 C 1.35868 * 109.79329 * 180.20038 * 3 2 1 5 5 C 1.48086 * 126.68333 * 179.86529 * 4 3 2 6 6 C 1.39099 * 119.63257 * 359.66342 * 5 4 3 7 7 C 1.40762 * 118.75304 * 180.02562 * 6 5 4 8 8 C 1.41539 * 120.97896 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99820 * 336.10632 * 8 7 6 10 10 C 1.40037 * 119.99873 * 156.10623 * 8 7 6 11 11 N 1.30738 * 120.00118 * 343.16076 * 10 8 7 12 12 Si 1.86798 * 119.99963 * 163.15892 * 10 8 7 13 13 H 1.48506 * 109.47088 * 59.99997 * 12 10 8 14 14 H 1.48500 * 109.47025 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47174 * 300.00440 * 12 10 8 16 16 C 1.41197 * 118.04240 * 359.97438 * 7 6 5 17 17 C 1.37656 * 119.10979 * 359.97438 * 16 7 6 18 18 N 1.31979 * 121.17774 * 0.02562 * 17 16 7 19 19 C 1.46727 * 106.62854 * 359.60362 * 4 3 2 20 20 C 1.39601 * 135.19176 * 180.24336 * 19 4 3 21 21 C 1.36718 * 118.71740 * 180.02562 * 20 19 4 22 22 N 1.32262 * 121.27067 * 359.93192 * 21 20 19 23 23 C 1.31740 * 122.54368 * 0.03809 * 22 21 20 24 24 C 1.37664 * 124.89089 * 179.75559 * 2 1 3 25 25 H 1.08995 * 109.47503 * 270.24473 * 1 2 3 26 26 H 1.09000 * 109.47466 * 30.24672 * 1 2 3 27 27 H 1.08999 * 109.47189 * 150.24442 * 1 2 3 28 28 H 1.07991 * 125.10477 * 0.07050 * 3 2 1 29 29 H 1.08005 * 120.62680 * 0.02562 * 6 5 4 30 30 H 0.96998 * 120.00318 * 179.97438 * 11 10 8 31 31 H 1.07999 * 120.44570 * 180.02562 * 16 7 6 32 32 H 1.08005 * 119.40947 * 180.27543 * 17 16 7 33 33 H 1.07999 * 120.63940 * 359.97438 * 20 19 4 34 34 H 1.08003 * 119.36512 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.85781 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2440 1.1172 0.0000 4 6 3.5558 0.7634 -0.0045 5 6 4.7191 1.6796 -0.0088 6 6 4.5114 3.0550 -0.0155 7 6 5.6304 3.9089 -0.0201 8 6 5.4735 5.3155 -0.0275 9 1 4.5637 5.7553 -0.4087 10 6 6.4979 6.1369 0.4593 11 7 7.4405 5.6305 1.2106 12 14 6.5177 7.9559 0.0352 13 1 5.2754 8.5952 0.5387 14 1 7.6974 8.5989 0.6679 15 1 6.5963 8.1198 -1.4386 16 6 6.9141 3.3208 -0.0170 17 6 7.0220 1.9485 -0.0092 18 7 5.9499 1.1788 -0.0050 19 6 3.5951 -0.7033 0.0022 20 6 4.6051 -1.6670 0.0062 21 6 4.2527 -2.9880 0.0118 22 7 2.9834 -3.3599 0.0149 23 6 1.9910 -2.4934 0.0120 24 6 2.2524 -1.1292 0.0048 25 1 -0.3634 0.0044 1.0276 26 1 -0.3634 0.8877 -0.5176 27 1 -0.3633 -0.8922 -0.5100 28 1 1.8745 2.1320 0.0011 29 1 3.5102 3.4602 -0.0172 30 1 8.1502 6.1994 1.5476 31 1 7.7994 3.9393 -0.0199 32 1 8.0016 1.4935 -0.0022 33 1 5.6448 -1.3747 0.0040 34 1 5.0256 -3.7423 0.0145 35 1 0.9700 -2.8454 0.0151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245487240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:43 Heat of formation + Delta-G solvation = 94.287642 kcal Electronic energy + Delta-G solvation = -20106.414033 eV Core-core repulsion = 17069.341408 eV Total energy + Delta-G solvation = -3037.072625 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.31107 -38.26106 -37.80436 -34.26999 -33.13042 -30.84618 -30.48435 -30.27667 -28.75707 -26.10809 -25.81129 -23.25796 -22.40549 -21.85989 -20.84356 -19.53454 -17.69911 -16.59690 -16.54012 -15.51573 -15.38300 -15.29331 -14.56472 -14.42914 -14.07998 -13.85550 -13.71473 -13.39007 -12.77184 -12.62690 -12.50985 -12.24558 -11.90053 -11.71351 -11.42482 -11.37292 -11.16041 -10.94006 -10.36116 -9.90527 -9.69539 -9.42975 -9.32303 -8.46141 -8.08137 -8.05380 -7.97200 -6.93091 -6.78376 -4.63253 1.24163 1.74719 2.31152 2.73784 2.86317 2.98959 3.00939 3.13360 3.54541 3.81986 4.26480 4.63349 4.67041 4.78761 4.87035 5.03429 5.09225 5.13768 5.31341 5.41731 5.68045 5.70775 5.78032 6.03416 6.10168 6.20132 6.52053 6.72387 6.77440 6.86778 6.92262 7.03464 7.08828 7.29275 7.31805 7.40336 7.47426 7.81868 8.08166 8.31342 8.41769 8.70640 8.71199 9.58736 10.03722 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028590 B = 0.004210 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.112144 B = 6649.941430 C = 7547.980552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.477 5.477 3 C 0.064 3.936 4 C -0.094 4.094 5 C 0.192 3.808 6 C -0.261 4.261 7 C 0.130 3.870 8 C -0.458 4.458 9 H 0.080 0.920 10 C 0.079 3.921 11 N -0.786 5.786 12 Si 0.912 3.088 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.262 1.262 16 C -0.213 4.213 17 C 0.088 3.912 18 N -0.563 5.563 19 C -0.050 4.050 20 C -0.091 4.091 21 C 0.033 3.967 22 N -0.473 5.473 23 C 0.098 3.902 24 C 0.032 3.968 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.176 0.824 29 H 0.099 0.901 30 H 0.284 0.716 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 -6.386 -1.641 11.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.160 5.160 3 C -0.064 4.064 4 C -0.101 4.101 5 C 0.058 3.942 6 C -0.284 4.284 7 C 0.122 3.878 8 C -0.489 4.489 9 H 0.099 0.901 10 C -0.141 4.141 11 N -0.411 5.411 12 Si 0.736 3.264 13 H -0.189 1.189 14 H -0.202 1.202 15 H -0.187 1.187 16 C -0.235 4.235 17 C -0.064 4.064 18 N -0.278 5.278 19 C -0.061 4.061 20 C -0.112 4.112 21 C -0.116 4.116 22 N -0.182 5.182 23 C -0.070 4.070 24 C -0.076 4.076 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.193 0.807 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.416 -8.140 -1.489 12.535 hybrid contribution 0.155 2.894 -0.036 2.898 sum -9.261 -5.246 -1.525 10.753 Atomic orbital electron populations 1.21940 0.77067 1.04176 1.02987 1.43484 1.05828 1.03974 1.62728 1.21923 0.89788 0.90974 1.03741 1.18881 0.91444 0.90153 1.09649 1.18355 0.89301 0.89164 0.97398 1.21710 0.98265 0.92458 1.15962 1.17714 0.90735 0.93275 0.86054 1.19549 1.02135 0.90658 1.36571 0.90147 1.25953 0.94196 1.01648 0.92313 1.69759 1.10441 1.38590 1.22280 0.86311 0.78760 0.81305 0.80066 1.18888 1.20183 1.18682 1.22227 0.98906 0.94384 1.08015 1.21944 0.95355 0.91209 0.97865 1.67294 0.97722 1.40123 1.22652 1.19255 0.91496 0.93472 1.01895 1.21514 1.00933 0.91912 0.96794 1.22024 0.92609 0.94635 1.02363 1.67458 1.00563 1.37567 1.12608 1.21569 0.98450 0.85320 1.01645 1.19411 0.91251 0.89779 1.07197 0.91261 0.89767 0.90138 0.80721 0.88273 0.90504 0.85681 0.86093 0.83588 0.83255 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 11.02 59.84 0.66 1.33 16 2 N -0.48 -6.63 3.16 -121.55 -0.38 -7.01 16 3 C 0.06 1.03 10.70 -16.46 -0.18 0.85 16 4 C -0.09 -1.88 6.25 -103.28 -0.65 -2.52 16 5 C 0.19 4.47 6.75 -83.06 -0.56 3.91 16 6 C -0.26 -6.22 9.40 -38.31 -0.36 -6.58 16 7 C 0.13 3.37 5.60 -106.56 -0.60 2.77 16 8 C -0.46 -11.62 9.12 -37.65 -0.34 -11.97 16 9 H 0.08 1.93 7.90 -52.48 -0.41 1.52 16 10 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16 11 N -0.79 -19.49 10.92 55.55 0.61 -18.88 16 12 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 13 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 14 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 15 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 16 C -0.21 -5.40 8.79 -38.67 -0.34 -5.74 16 17 C 0.09 2.09 11.15 -17.70 -0.20 1.89 16 18 N -0.56 -13.44 9.22 -9.97 -0.09 -13.53 16 19 C -0.05 -0.94 6.30 -104.97 -0.66 -1.60 16 20 C -0.09 -1.63 9.86 -39.62 -0.39 -2.02 16 21 C 0.03 0.52 11.11 -17.92 -0.20 0.33 16 22 N -0.47 -7.54 10.32 -13.38 -0.14 -7.68 16 23 C 0.10 1.43 11.18 -17.34 -0.19 1.24 16 24 C 0.03 0.51 6.82 -84.01 -0.57 -0.06 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.08 0.55 8.12 -51.93 -0.42 0.12 16 28 H 0.18 2.37 7.21 -52.49 -0.38 1.99 16 29 H 0.10 2.12 6.99 -52.48 -0.37 1.76 16 30 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 31 H 0.13 3.22 6.20 -52.49 -0.33 2.90 16 32 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 33 H 0.15 2.67 7.37 -52.49 -0.39 2.28 16 34 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -30.11 306.30 -8.63 -38.74 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.54 Total: 7.37 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -4.67 Total: -16.37 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.01 Total: -47.10 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.11 -8.63 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245487240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.030 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds