Wall clock time and date at job start Tue Mar 31 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36200 * 124.88751 * 2 1 4 4 C 1.35868 * 109.79329 * 180.20038 * 3 2 1 5 5 C 1.48086 * 126.68333 * 179.86529 * 4 3 2 6 6 C 1.39099 * 119.63257 * 359.66342 * 5 4 3 7 7 C 1.40762 * 118.75304 * 180.02562 * 6 5 4 8 8 C 1.41539 * 120.97896 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99820 * 336.10632 * 8 7 6 10 10 C 1.40037 * 119.99873 * 156.10623 * 8 7 6 11 11 N 1.30738 * 120.00118 * 343.16076 * 10 8 7 12 12 Si 1.86798 * 119.99963 * 163.15892 * 10 8 7 13 13 H 1.48506 * 109.47088 * 59.99997 * 12 10 8 14 14 H 1.48500 * 109.47025 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47174 * 300.00440 * 12 10 8 16 16 C 1.41197 * 118.04240 * 359.97438 * 7 6 5 17 17 C 1.37656 * 119.10979 * 359.97438 * 16 7 6 18 18 N 1.31979 * 121.17774 * 0.02562 * 17 16 7 19 19 C 1.46727 * 106.62854 * 359.60362 * 4 3 2 20 20 C 1.39601 * 135.19176 * 180.24336 * 19 4 3 21 21 C 1.36718 * 118.71740 * 180.02562 * 20 19 4 22 22 N 1.32262 * 121.27067 * 359.93192 * 21 20 19 23 23 C 1.31740 * 122.54368 * 0.03809 * 22 21 20 24 24 C 1.37664 * 124.89089 * 179.75559 * 2 1 3 25 25 H 1.08995 * 109.47503 * 270.24473 * 1 2 3 26 26 H 1.09000 * 109.47466 * 30.24672 * 1 2 3 27 27 H 1.08999 * 109.47189 * 150.24442 * 1 2 3 28 28 H 1.07991 * 125.10477 * 0.07050 * 3 2 1 29 29 H 1.08005 * 120.62680 * 0.02562 * 6 5 4 30 30 H 0.96998 * 120.00318 * 179.97438 * 11 10 8 31 31 H 1.07999 * 120.44570 * 180.02562 * 16 7 6 32 32 H 1.08005 * 119.40947 * 180.27543 * 17 16 7 33 33 H 1.07999 * 120.63940 * 359.97438 * 20 19 4 34 34 H 1.08003 * 119.36512 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.85781 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2440 1.1172 0.0000 4 6 3.5558 0.7634 -0.0045 5 6 4.7191 1.6796 -0.0088 6 6 4.5114 3.0550 -0.0155 7 6 5.6304 3.9089 -0.0201 8 6 5.4735 5.3155 -0.0275 9 1 4.5637 5.7553 -0.4087 10 6 6.4979 6.1369 0.4593 11 7 7.4405 5.6305 1.2106 12 14 6.5177 7.9559 0.0352 13 1 5.2754 8.5952 0.5387 14 1 7.6974 8.5989 0.6679 15 1 6.5963 8.1198 -1.4386 16 6 6.9141 3.3208 -0.0170 17 6 7.0220 1.9485 -0.0092 18 7 5.9499 1.1788 -0.0050 19 6 3.5951 -0.7033 0.0022 20 6 4.6051 -1.6670 0.0062 21 6 4.2527 -2.9880 0.0118 22 7 2.9834 -3.3599 0.0149 23 6 1.9910 -2.4934 0.0120 24 6 2.2524 -1.1292 0.0048 25 1 -0.3634 0.0044 1.0276 26 1 -0.3634 0.8877 -0.5176 27 1 -0.3633 -0.8922 -0.5100 28 1 1.8745 2.1320 0.0011 29 1 3.5102 3.4602 -0.0172 30 1 8.1502 6.1994 1.5476 31 1 7.7994 3.9393 -0.0199 32 1 8.0016 1.4935 -0.0022 33 1 5.6448 -1.3747 0.0040 34 1 5.0256 -3.7423 0.0145 35 1 0.9700 -2.8454 0.0151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245487240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:42 Heat of formation + Delta-G solvation = 77.508914 kcal Electronic energy + Delta-G solvation = -20107.141613 eV Core-core repulsion = 17069.341408 eV Total energy + Delta-G solvation = -3037.800205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.53757 -40.00371 -39.05830 -36.05304 -34.41821 -32.63305 -31.99576 -31.46283 -30.15233 -27.83358 -27.06649 -24.55111 -23.90467 -23.44411 -22.37588 -20.99206 -19.26965 -18.05154 -17.75540 -17.11074 -16.68442 -16.43277 -16.26084 -15.93871 -15.64853 -15.28793 -14.99816 -14.43046 -14.34648 -14.22366 -14.01938 -13.36203 -13.26726 -13.07529 -12.87538 -12.75720 -12.69536 -12.49706 -11.97879 -11.74264 -11.24513 -10.95737 -10.58749 -9.97660 -9.92275 -9.79993 -9.40469 -8.70251 -8.29646 -6.55049 -0.04667 0.47225 0.73940 0.97056 1.39212 1.50817 1.53997 1.79066 1.97106 2.18785 2.82022 3.03841 3.55741 3.70545 3.74656 3.78811 3.82554 4.04625 4.13256 4.40201 4.52383 4.53533 4.56803 4.70217 4.77575 4.88664 4.91768 5.00567 5.09478 5.24616 5.35843 5.45111 5.55143 5.63876 5.70888 5.93634 6.03124 6.24320 6.26490 6.54081 6.81891 6.84058 7.10081 7.75983 8.26061 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028590 B = 0.004210 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.112144 B = 6649.941430 C = 7547.980552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.463 5.463 3 C 0.099 3.901 4 C -0.158 4.158 5 C 0.194 3.806 6 C -0.280 4.280 7 C 0.103 3.897 8 C -0.488 4.488 9 H 0.086 0.914 10 C 0.038 3.962 11 N -0.816 5.816 12 Si 0.987 3.013 13 H -0.256 1.256 14 H -0.268 1.268 15 H -0.260 1.260 16 C -0.241 4.241 17 C 0.084 3.916 18 N -0.576 5.576 19 C -0.078 4.078 20 C -0.122 4.122 21 C 0.041 3.959 22 N -0.487 5.487 23 C 0.115 3.885 24 C 0.023 3.977 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.202 0.798 29 H 0.118 0.882 30 H 0.292 0.708 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.173 0.827 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 -6.568 -1.823 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.144 5.144 3 C -0.033 4.033 4 C -0.166 4.166 5 C 0.060 3.940 6 C -0.303 4.303 7 C 0.095 3.905 8 C -0.519 4.519 9 H 0.104 0.896 10 C -0.179 4.179 11 N -0.442 5.442 12 Si 0.807 3.193 13 H -0.180 1.180 14 H -0.192 1.192 15 H -0.184 1.184 16 C -0.264 4.264 17 C -0.067 4.067 18 N -0.291 5.291 19 C -0.089 4.089 20 C -0.142 4.142 21 C -0.107 4.107 22 N -0.196 5.196 23 C -0.053 4.053 24 C -0.086 4.086 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.218 0.782 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.191 0.809 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.412 -8.364 -1.667 15.060 hybrid contribution 0.913 2.807 0.041 2.952 sum -11.499 -5.557 -1.626 12.875 Atomic orbital electron populations 1.22437 0.73223 1.06575 1.04944 1.43844 1.07852 1.02516 1.60187 1.22270 0.88871 0.92575 0.99599 1.18885 0.91962 0.90660 1.15086 1.18882 0.90149 0.89859 0.95115 1.21913 0.98653 0.92758 1.16954 1.18124 0.91563 0.94278 0.86491 1.19866 1.03301 0.90986 1.37730 0.89602 1.26863 0.93249 1.06319 0.91448 1.69823 1.11038 1.40580 1.22751 0.85171 0.79229 0.75145 0.79713 1.17963 1.19236 1.18415 1.22191 0.98628 0.94960 1.10579 1.22297 0.96543 0.90931 0.96969 1.67430 0.98219 1.40101 1.23381 1.19521 0.93466 0.93270 1.02674 1.21482 1.00200 0.93004 0.99499 1.22334 0.93467 0.94237 1.00672 1.67587 1.00677 1.37837 1.13477 1.22249 0.99974 0.84432 0.98624 1.19567 0.90384 0.90945 1.07712 0.89430 0.87544 0.87792 0.78173 0.86399 0.89748 0.86902 0.84007 0.85425 0.80947 0.79463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 11.02 127.77 1.41 2.21 16 2 N -0.46 -11.33 3.16 -538.46 -1.70 -13.03 16 3 C 0.10 2.99 10.70 83.46 0.89 3.88 16 4 C -0.16 -6.37 6.25 -18.99 -0.12 -6.49 16 5 C 0.19 9.34 6.75 41.81 0.28 9.62 16 6 C -0.28 -13.76 9.40 23.09 0.22 -13.55 16 7 C 0.10 5.57 5.60 -21.12 -0.12 5.45 16 8 C -0.49 -25.43 9.12 23.52 0.21 -25.22 16 9 H 0.09 4.20 7.90 -2.91 -0.02 4.18 16 10 C 0.04 1.86 5.20 85.29 0.44 2.30 16 11 N -0.82 -41.63 10.92 21.84 0.24 -41.39 16 12 Si 0.99 36.35 29.59 68.60 2.03 38.38 16 13 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 14 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 15 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 16 C -0.24 -12.90 8.79 22.86 0.20 -12.70 16 17 C 0.08 4.21 11.15 84.53 0.94 5.16 16 18 N -0.58 -28.80 9.22 -185.45 -1.71 -30.51 16 19 C -0.08 -2.96 6.30 -20.09 -0.13 -3.08 16 20 C -0.12 -4.44 9.86 22.24 0.22 -4.22 16 21 C 0.04 1.28 11.11 84.27 0.94 2.21 16 22 N -0.49 -14.40 10.32 -196.26 -2.03 -16.43 16 23 C 0.12 2.98 11.18 84.87 0.95 3.92 16 24 C 0.02 0.67 6.82 39.03 0.27 0.94 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.11 0.87 8.13 -2.39 -0.02 0.85 16 27 H 0.10 0.82 8.12 -2.39 -0.02 0.80 16 28 H 0.20 4.88 7.21 -2.92 -0.02 4.85 16 29 H 0.12 5.10 6.99 -2.91 -0.02 5.08 16 30 H 0.29 13.39 8.29 -92.71 -0.77 12.62 16 31 H 0.11 6.18 6.20 -2.91 -0.02 6.16 16 32 H 0.14 6.19 8.06 -2.91 -0.02 6.16 16 33 H 0.13 4.99 7.37 -2.91 -0.02 4.97 16 34 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -68.94 306.30 4.56 -64.38 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 1.12 Total: 28.16 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 6.61 Total: -29.56 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.20 Total: -101.36 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Total: -68.94 4.56 -64.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245487240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.887 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds