Wall clock time and date at job start Tue Mar 31 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35926 * 124.83755 * 2 1 4 4 C 1.36519 * 109.72919 * 179.97438 * 3 2 1 5 5 C 1.47528 * 126.74695 * 179.97438 * 4 3 2 6 6 C 1.40522 * 120.35863 * 310.03094 * 5 4 3 7 7 C 1.36495 * 118.59688 * 179.97438 * 6 5 4 8 8 C 1.40986 * 119.28156 * 359.97438 * 7 6 5 9 9 C 1.40807 * 119.65798 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00405 * 353.65728 * 9 8 7 11 11 C 1.39991 * 119.99834 * 173.65084 * 9 8 7 12 12 N 1.30793 * 120.00054 * 6.32878 * 11 9 8 13 13 Si 1.86804 * 120.00019 * 186.31944 * 11 9 8 14 14 H 1.48497 * 109.46572 * 94.99016 * 13 11 9 15 15 H 1.48493 * 109.47101 * 214.98790 * 13 11 9 16 16 H 1.48493 * 109.47131 * 334.99234 * 13 11 9 17 17 N 1.33843 * 120.68007 * 0.02562 * 8 7 6 18 18 C 1.31140 * 121.50962 * 359.72301 * 17 8 7 19 19 C 1.46850 * 106.51402 * 0.02562 * 4 3 2 20 20 C 1.39523 * 135.17381 * 180.02562 * 19 4 3 21 21 C 1.36818 * 118.71709 * 179.26968 * 20 19 4 22 22 N 1.32218 * 121.24063 * 0.64217 * 21 20 19 23 23 C 1.31763 * 122.54098 * 359.57485 * 22 21 20 24 24 C 1.37769 * 124.84068 * 179.68779 * 2 1 3 25 25 H 1.09000 * 109.46643 * 90.02399 * 1 2 3 26 26 H 1.09001 * 109.47646 * 330.03286 * 1 2 3 27 27 H 1.08995 * 109.47696 * 210.02683 * 1 2 3 28 28 H 1.08006 * 125.13874 * 359.97438 * 3 2 1 29 29 H 1.07994 * 120.70279 * 359.94645 * 6 5 4 30 30 H 1.08000 * 120.35518 * 180.02562 * 7 6 5 31 31 H 0.96992 * 119.99963 * 179.97438 * 12 11 9 32 32 H 1.07998 * 119.67009 * 180.29302 * 18 17 8 33 33 H 1.08003 * 120.64120 * 359.97155 * 20 19 4 34 34 H 1.08000 * 119.37682 * 180.22068 * 21 20 19 35 35 H 1.07996 * 119.85115 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2415 1.1156 0.0000 4 6 3.5595 0.7598 0.0006 5 6 4.7197 1.6710 0.0002 6 6 4.7968 2.7224 -0.9289 7 6 5.8861 3.5442 -0.8967 8 6 6.8944 3.3154 0.0618 9 6 8.0214 4.1586 0.1024 10 1 8.1612 4.9103 -0.6603 11 6 8.9605 4.0226 1.1316 12 7 8.8588 3.0354 1.9835 13 14 10.3593 5.2509 1.2880 14 1 9.9798 6.3125 2.2545 15 1 11.5782 4.5540 1.7714 16 1 10.6314 5.8625 -0.0375 17 7 6.7914 2.3049 0.9334 18 6 5.7554 1.5010 0.9315 19 6 3.5955 -0.7082 0.0003 20 6 4.6030 -1.6734 0.0011 21 6 4.2478 -2.9945 0.0158 22 7 2.9781 -3.3633 0.0165 23 6 1.9877 -2.4942 0.0114 24 6 2.2520 -1.1307 0.0062 25 1 -0.3632 -0.0004 -1.0277 26 1 -0.3634 0.8903 0.5133 27 1 -0.3634 -0.8897 0.5142 28 1 1.8716 2.1304 -0.0004 29 1 4.0109 2.8767 -1.6534 30 1 5.9743 4.3613 -1.5974 31 1 9.5097 2.9410 2.6964 32 1 5.7006 0.6978 1.6514 33 1 5.6433 -1.3831 0.0017 34 1 5.0191 -3.7505 0.0202 35 1 0.9658 -2.8437 0.0127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245489141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:50 Heat of formation + Delta-G solvation = 103.632525 kcal Electronic energy + Delta-G solvation = -20085.746808 eV Core-core repulsion = 17049.079408 eV Total energy + Delta-G solvation = -3036.667400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24012 -38.16532 -37.77989 -34.03665 -32.98857 -30.89976 -30.39213 -30.21750 -29.06676 -26.77614 -24.90460 -23.16539 -22.25904 -21.72693 -21.10481 -19.32186 -17.54496 -17.03991 -16.49801 -15.61557 -15.47418 -15.30740 -14.42452 -14.26526 -14.06673 -13.93122 -13.65959 -13.36909 -12.68656 -12.57589 -12.38820 -11.94320 -11.83855 -11.74736 -11.45239 -11.23761 -11.07453 -10.83794 -10.49524 -10.01411 -9.69689 -9.38888 -9.31536 -8.39152 -8.26921 -7.89848 -7.60436 -6.98642 -6.48409 -4.55794 1.25721 1.75909 2.47049 2.93769 2.97343 3.04438 3.07050 3.07798 3.37628 3.87756 4.23955 4.64049 4.68216 4.79061 4.89195 5.07434 5.09454 5.18562 5.31470 5.60101 5.72989 5.85301 5.93939 6.05497 6.07977 6.16916 6.28919 6.54885 6.76436 6.79100 6.87935 7.02386 7.04169 7.28704 7.38333 7.42949 7.61648 7.76657 7.98280 8.15804 8.30515 8.57182 8.85794 10.05483 10.22136 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.004090 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.524598 B = 6844.650226 C = 7522.260825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.477 5.477 3 C 0.028 3.972 4 C -0.059 4.059 5 C -0.241 4.241 6 C -0.038 4.038 7 C -0.273 4.273 8 C 0.253 3.747 9 C -0.420 4.420 10 H 0.085 0.915 11 C 0.066 3.934 12 N -0.706 5.706 13 Si 0.909 3.091 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.260 1.260 17 N -0.487 5.487 18 C 0.153 3.847 19 C -0.069 4.069 20 C -0.104 4.104 21 C 0.037 3.963 22 N -0.474 5.474 23 C 0.099 3.901 24 C 0.036 3.964 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.168 0.832 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.275 0.725 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.150 0.850 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 -4.460 -1.954 12.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.160 5.160 3 C -0.098 4.098 4 C -0.066 4.066 5 C -0.247 4.247 6 C -0.062 4.062 7 C -0.296 4.296 8 C 0.130 3.870 9 C -0.451 4.451 10 H 0.103 0.897 11 C -0.160 4.160 12 N -0.327 5.327 13 Si 0.733 3.267 14 H -0.194 1.194 15 H -0.200 1.200 16 H -0.184 1.184 17 N -0.199 5.199 18 C -0.015 4.015 19 C -0.081 4.081 20 C -0.124 4.124 21 C -0.113 4.113 22 N -0.183 5.183 23 C -0.069 4.069 24 C -0.073 4.073 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.185 0.815 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.959 -5.507 -1.173 12.321 hybrid contribution -0.044 1.631 -0.559 1.724 sum -11.003 -3.877 -1.732 11.794 Atomic orbital electron populations 1.21899 0.77527 1.03981 1.02719 1.43377 1.05577 1.04083 1.63004 1.22057 0.90014 0.90536 1.07163 1.18984 0.91863 0.89447 1.06317 1.18361 0.98097 1.02132 1.06071 1.20570 0.96336 0.93596 0.95722 1.21374 0.98321 1.04121 1.05742 1.18626 0.91601 0.89649 0.87163 1.19632 1.03237 1.13882 1.08308 0.89667 1.26131 0.98879 0.95759 0.95236 1.70163 1.29775 1.23625 1.09109 0.86286 0.79988 0.80682 0.79770 1.19380 1.19980 1.18418 1.68810 1.21397 1.05174 1.24524 1.22695 0.88835 0.96069 0.93871 1.19495 0.91673 0.94144 1.02799 1.21332 1.00017 0.92493 0.98578 1.21974 0.92657 0.94486 1.02164 1.67460 1.00543 1.37503 1.12751 1.21584 0.98418 0.85476 1.01437 1.19336 0.91249 0.89639 1.07061 0.91511 0.90005 0.90312 0.81522 0.88879 0.88348 0.91405 0.86555 0.84803 0.83249 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 11.01 59.85 0.66 1.35 16 2 N -0.48 -6.57 3.15 -121.42 -0.38 -6.96 16 3 C 0.03 0.44 11.19 -16.36 -0.18 0.26 16 4 C -0.06 -1.12 5.77 -103.25 -0.60 -1.72 16 5 C -0.24 -5.28 5.83 -104.47 -0.61 -5.89 16 6 C -0.04 -0.84 9.80 -39.35 -0.39 -1.23 16 7 C -0.27 -6.52 9.76 -39.17 -0.38 -6.91 16 8 C 0.25 6.78 6.54 -84.98 -0.56 6.22 16 9 C -0.42 -10.96 9.10 -37.95 -0.35 -11.30 16 10 H 0.09 2.07 7.85 -52.48 -0.41 1.66 16 11 C 0.07 1.65 5.49 -17.34 -0.10 1.55 16 12 N -0.71 -18.43 11.46 55.55 0.64 -17.79 16 13 Si 0.91 18.07 29.57 -169.99 -5.03 13.04 16 14 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 15 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 17 N -0.49 -13.22 7.85 -10.80 -0.08 -13.31 16 18 C 0.15 3.70 10.94 -17.07 -0.19 3.51 16 19 C -0.07 -1.27 6.40 -104.95 -0.67 -1.94 16 20 C -0.10 -1.79 10.12 -39.62 -0.40 -2.19 16 21 C 0.04 0.57 11.12 -17.90 -0.20 0.38 16 22 N -0.47 -7.51 10.32 -13.37 -0.14 -7.65 16 23 C 0.10 1.43 11.17 -17.34 -0.19 1.24 16 24 C 0.04 0.57 6.82 -83.97 -0.57 0.00 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 28 H 0.17 2.22 8.06 -52.48 -0.42 1.80 16 29 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 32 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 33 H 0.13 2.29 8.06 -52.48 -0.42 1.86 16 34 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -30.60 311.65 -8.79 -39.39 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.77 Total: 5.25 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -4.72 Total: -16.67 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.03 Total: -45.70 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.60 -8.79 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245489141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.019 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds