Wall clock time and date at job start Tue Mar 31 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35926 * 124.83755 * 2 1 4 4 C 1.36519 * 109.72919 * 179.97438 * 3 2 1 5 5 C 1.47528 * 126.74695 * 179.97438 * 4 3 2 6 6 C 1.40522 * 120.35863 * 310.03094 * 5 4 3 7 7 C 1.36495 * 118.59688 * 179.97438 * 6 5 4 8 8 C 1.40986 * 119.28156 * 359.97438 * 7 6 5 9 9 C 1.40807 * 119.65798 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00405 * 353.65728 * 9 8 7 11 11 C 1.39991 * 119.99834 * 173.65084 * 9 8 7 12 12 N 1.30793 * 120.00054 * 6.32878 * 11 9 8 13 13 Si 1.86804 * 120.00019 * 186.31944 * 11 9 8 14 14 H 1.48497 * 109.46572 * 94.99016 * 13 11 9 15 15 H 1.48493 * 109.47101 * 214.98790 * 13 11 9 16 16 H 1.48493 * 109.47131 * 334.99234 * 13 11 9 17 17 N 1.33843 * 120.68007 * 0.02562 * 8 7 6 18 18 C 1.31140 * 121.50962 * 359.72301 * 17 8 7 19 19 C 1.46850 * 106.51402 * 0.02562 * 4 3 2 20 20 C 1.39523 * 135.17381 * 180.02562 * 19 4 3 21 21 C 1.36818 * 118.71709 * 179.26968 * 20 19 4 22 22 N 1.32218 * 121.24063 * 0.64217 * 21 20 19 23 23 C 1.31763 * 122.54098 * 359.57485 * 22 21 20 24 24 C 1.37769 * 124.84068 * 179.68779 * 2 1 3 25 25 H 1.09000 * 109.46643 * 90.02399 * 1 2 3 26 26 H 1.09001 * 109.47646 * 330.03286 * 1 2 3 27 27 H 1.08995 * 109.47696 * 210.02683 * 1 2 3 28 28 H 1.08006 * 125.13874 * 359.97438 * 3 2 1 29 29 H 1.07994 * 120.70279 * 359.94645 * 6 5 4 30 30 H 1.08000 * 120.35518 * 180.02562 * 7 6 5 31 31 H 0.96992 * 119.99963 * 179.97438 * 12 11 9 32 32 H 1.07998 * 119.67009 * 180.29302 * 18 17 8 33 33 H 1.08003 * 120.64120 * 359.97155 * 20 19 4 34 34 H 1.08000 * 119.37682 * 180.22068 * 21 20 19 35 35 H 1.07996 * 119.85115 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2415 1.1156 0.0000 4 6 3.5595 0.7598 0.0006 5 6 4.7197 1.6710 0.0002 6 6 4.7968 2.7224 -0.9289 7 6 5.8861 3.5442 -0.8967 8 6 6.8944 3.3154 0.0618 9 6 8.0214 4.1586 0.1024 10 1 8.1612 4.9103 -0.6603 11 6 8.9605 4.0226 1.1316 12 7 8.8588 3.0354 1.9835 13 14 10.3593 5.2509 1.2880 14 1 9.9798 6.3125 2.2545 15 1 11.5782 4.5540 1.7714 16 1 10.6314 5.8625 -0.0375 17 7 6.7914 2.3049 0.9334 18 6 5.7554 1.5010 0.9315 19 6 3.5955 -0.7082 0.0003 20 6 4.6030 -1.6734 0.0011 21 6 4.2478 -2.9945 0.0158 22 7 2.9781 -3.3633 0.0165 23 6 1.9877 -2.4942 0.0114 24 6 2.2520 -1.1307 0.0062 25 1 -0.3632 -0.0004 -1.0277 26 1 -0.3634 0.8903 0.5133 27 1 -0.3634 -0.8897 0.5142 28 1 1.8716 2.1304 -0.0004 29 1 4.0109 2.8767 -1.6534 30 1 5.9743 4.3613 -1.5974 31 1 9.5097 2.9410 2.6964 32 1 5.7006 0.6978 1.6514 33 1 5.6433 -1.3831 0.0017 34 1 5.0191 -3.7505 0.0202 35 1 0.9658 -2.8437 0.0127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245489141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:49 Heat of formation + Delta-G solvation = 86.687253 kcal Electronic energy + Delta-G solvation = -20086.481610 eV Core-core repulsion = 17049.079408 eV Total energy + Delta-G solvation = -3037.402203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.45550 -39.94358 -39.03202 -35.73488 -34.37025 -32.62394 -31.97197 -31.47650 -30.44102 -28.20835 -26.31658 -24.40245 -23.82275 -23.46540 -22.53175 -20.69791 -19.39306 -18.25009 -17.70495 -17.40392 -16.70718 -16.39856 -16.03572 -15.84957 -15.47842 -15.24899 -15.05935 -14.39744 -14.31092 -14.16495 -13.68964 -13.31076 -13.27953 -12.97541 -12.76843 -12.74718 -12.65253 -12.54834 -12.13118 -11.74008 -11.24293 -10.87679 -10.57346 -10.17574 -9.74269 -9.48119 -9.39514 -8.44661 -8.28176 -6.45920 0.01010 0.51939 0.77819 1.20254 1.40927 1.48256 1.55874 1.86223 1.91027 2.22298 2.83219 3.01124 3.60537 3.75310 3.81484 3.90306 3.98418 4.12388 4.19715 4.39620 4.44468 4.52423 4.57420 4.70218 4.75683 4.78107 4.87021 4.93191 5.03846 5.19833 5.32965 5.50156 5.57689 5.64506 5.83049 5.91679 6.13921 6.15531 6.28853 6.37102 6.72340 6.95973 7.10025 8.18862 8.42725 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.004090 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.524598 B = 6844.650226 C = 7522.260825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.465 5.465 3 C 0.066 3.934 4 C -0.121 4.121 5 C -0.212 4.212 6 C -0.041 4.041 7 C -0.284 4.284 8 C 0.219 3.781 9 C -0.461 4.461 10 H 0.092 0.908 11 C 0.022 3.978 12 N -0.754 5.754 13 Si 0.989 3.011 14 H -0.263 1.263 15 H -0.269 1.269 16 H -0.252 1.252 17 N -0.521 5.521 18 C 0.126 3.874 19 C -0.095 4.095 20 C -0.133 4.133 21 C 0.042 3.958 22 N -0.489 5.489 23 C 0.115 3.885 24 C 0.026 3.974 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.197 0.803 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.279 0.721 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.171 0.829 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.348 -4.575 -2.635 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.147 5.147 3 C -0.063 4.063 4 C -0.128 4.128 5 C -0.218 4.218 6 C -0.065 4.065 7 C -0.306 4.306 8 C 0.094 3.906 9 C -0.492 4.492 10 H 0.110 0.890 11 C -0.200 4.200 12 N -0.376 5.376 13 Si 0.809 3.191 14 H -0.188 1.188 15 H -0.193 1.193 16 H -0.176 1.176 17 N -0.234 5.234 18 C -0.040 4.040 19 C -0.106 4.106 20 C -0.153 4.153 21 C -0.106 4.106 22 N -0.198 5.198 23 C -0.053 4.053 24 C -0.084 4.084 25 H 0.105 0.895 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.213 0.787 29 H 0.146 0.854 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.188 0.812 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.031 -5.671 -1.860 15.247 hybrid contribution 0.538 1.496 -0.397 1.639 sum -13.492 -4.175 -2.257 14.303 Atomic orbital electron populations 1.22367 0.73766 1.06214 1.04712 1.43725 1.07611 1.02706 1.60617 1.22394 0.89055 0.92174 1.02726 1.18877 0.92392 0.89710 1.11806 1.18582 0.97965 1.01521 1.03742 1.20928 0.96544 0.92980 0.96041 1.21587 0.98444 1.05077 1.05502 1.19074 0.93050 0.90169 0.88269 1.19965 1.04433 1.15008 1.09818 0.88990 1.27061 1.01219 0.97439 0.94243 1.70273 1.31317 1.25807 1.10164 0.85095 0.76245 0.77821 0.79942 1.18789 1.19334 1.17583 1.68711 1.22976 1.06058 1.25633 1.22847 0.89735 0.96223 0.95148 1.19696 0.93411 0.93977 1.03515 1.21325 0.99405 0.93501 1.01084 1.22269 0.93452 0.94210 1.00689 1.67578 1.00676 1.37858 1.13696 1.22234 0.99855 0.84726 0.98521 1.19481 0.90504 0.90762 1.07635 0.89540 0.87834 0.88256 0.78654 0.85406 0.86920 0.91000 0.86700 0.86473 0.81211 0.79742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 11.01 127.77 1.41 2.20 16 2 N -0.47 -10.94 3.15 -538.05 -1.70 -12.64 16 3 C 0.07 1.85 11.19 83.66 0.94 2.79 16 4 C -0.12 -4.49 5.77 -18.97 -0.11 -4.60 16 5 C -0.21 -9.47 5.83 -19.77 -0.12 -9.58 16 6 C -0.04 -1.78 9.80 22.42 0.22 -1.56 16 7 C -0.28 -13.84 9.76 22.54 0.22 -13.62 16 8 C 0.22 12.28 6.54 40.14 0.26 12.54 16 9 C -0.46 -25.16 9.10 23.32 0.21 -24.94 16 10 H 0.09 4.64 7.85 -2.91 -0.02 4.61 16 11 C 0.02 1.15 5.49 85.27 0.47 1.62 16 12 N -0.75 -41.45 11.46 21.83 0.25 -41.20 16 13 Si 0.99 38.11 29.57 68.60 2.03 40.14 16 14 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 15 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 16 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 17 N -0.52 -29.97 7.85 -188.10 -1.48 -31.45 16 18 C 0.13 6.42 10.94 85.30 0.93 7.35 16 19 C -0.09 -3.41 6.40 -20.08 -0.13 -3.54 16 20 C -0.13 -4.69 10.12 22.25 0.23 -4.47 16 21 C 0.04 1.30 11.12 84.30 0.94 2.24 16 22 N -0.49 -14.47 10.32 -196.21 -2.02 -16.50 16 23 C 0.11 2.94 11.17 84.86 0.95 3.89 16 24 C 0.03 0.74 6.82 39.00 0.27 1.01 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 0.82 8.13 -2.39 -0.02 0.80 16 27 H 0.10 0.80 8.11 -2.39 -0.02 0.78 16 28 H 0.20 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 31 H 0.28 13.86 8.29 -92.71 -0.77 13.09 16 32 H 0.12 5.66 8.06 -2.91 -0.02 5.64 16 33 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 34 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -70.92 311.65 4.87 -66.05 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 1.11 Total: 24.28 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 6.68 Total: -28.69 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -4.95 Total: -101.78 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -70.92 4.87 -66.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245489141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.735 kcal (2) G-P(sol) polarization free energy of solvation -70.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds