Wall clock time and date at job start Tue Mar 31 2020 01:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36224 * 124.88907 * 2 1 4 4 C 1.35846 * 109.79623 * 180.02562 * 3 2 1 5 5 C 1.48125 * 126.68312 * 179.97438 * 4 3 2 6 6 C 1.40163 * 120.83102 * 130.02568 * 5 4 3 7 7 C 1.38393 * 119.41292 * 180.25947 * 6 5 4 8 8 N 1.31542 * 121.16466 * 359.39079 * 7 6 5 9 9 C 1.33686 * 121.81353 * 0.64964 * 8 7 6 10 10 C 1.41446 * 119.77461 * 179.67441 * 9 8 7 11 11 H 1.07993 * 120.00276 * 179.97438 * 10 9 8 12 12 C 1.40028 * 119.99574 * 359.97438 * 10 9 8 13 13 N 1.30744 * 120.00230 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99637 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47452 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47071 * 119.99808 * 14 12 10 17 17 H 1.48504 * 109.46880 * 239.99927 * 14 12 10 18 18 C 1.39481 * 120.83234 * 310.00594 * 5 4 3 19 19 C 1.46714 * 106.63561 * 0.26169 * 4 3 2 20 20 C 1.39605 * 135.19320 * 180.51320 * 19 4 3 21 21 C 1.36724 * 118.72250 * 179.56381 * 20 19 4 22 22 N 1.32267 * 121.26519 * 359.69680 * 21 20 19 23 23 C 1.31736 * 122.54849 * 0.02562 * 22 21 20 24 24 C 1.37663 * 124.89488 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47289 * 90.02364 * 1 2 3 26 26 H 1.09005 * 109.46973 * 210.02864 * 1 2 3 27 27 H 1.08999 * 109.46929 * 330.01795 * 1 2 3 28 28 H 1.08009 * 125.10638 * 0.03740 * 3 2 1 29 29 H 1.08002 * 120.28953 * 359.97438 * 6 5 4 30 30 H 1.08005 * 119.41373 * 179.72251 * 7 6 5 31 31 H 0.96994 * 119.99607 * 180.02562 * 13 12 10 32 32 H 1.08003 * 120.59263 * 359.97438 * 18 5 4 33 33 H 1.07999 * 120.63578 * 359.24259 * 20 19 4 34 34 H 1.07995 * 119.36921 * 179.68086 * 21 20 19 35 35 H 1.07997 * 119.86034 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2442 1.1174 0.0000 4 6 3.5558 0.7637 -0.0006 5 6 4.7195 1.6802 -0.0013 6 6 5.7632 1.5167 0.9199 7 6 6.8338 2.3933 0.8965 8 7 6.8949 3.3699 0.0174 9 6 5.9264 3.5701 -0.8821 10 6 6.0331 4.6381 -1.8033 11 1 5.2530 4.8030 -2.5317 12 6 7.1503 5.4817 -1.7707 13 7 8.0944 5.2825 -0.8885 14 14 7.2909 6.8927 -2.9868 15 1 6.0996 6.9028 -3.8733 16 1 7.3688 8.1779 -2.2470 17 1 8.5164 6.7186 -3.8073 18 6 4.8042 2.7272 -0.9189 19 6 3.5953 -0.7029 -0.0074 20 6 4.6054 -1.6666 -0.0022 21 6 4.2531 -2.9877 -0.0030 22 7 2.9839 -3.3597 -0.0026 23 6 1.9914 -2.4934 -0.0018 24 6 2.2526 -1.1291 0.0005 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5143 27 1 -0.3633 0.8901 0.5136 28 1 1.8747 2.1323 0.0006 29 1 5.7299 0.7165 1.6445 30 1 7.6359 2.2701 1.6092 31 1 8.8680 5.8671 -0.8658 32 1 4.0210 2.8862 -1.6453 33 1 5.6450 -1.3742 -0.0029 34 1 5.0261 -3.7419 -0.0043 35 1 0.9704 -2.8454 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245490455.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:58 Heat of formation + Delta-G solvation = 105.410199 kcal Electronic energy + Delta-G solvation = -20087.955616 eV Core-core repulsion = 17051.365302 eV Total energy + Delta-G solvation = -3036.590315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41740 -38.18895 -37.83948 -33.99044 -33.17349 -30.97009 -30.47306 -29.94681 -29.16874 -26.13969 -25.62708 -23.32826 -22.48537 -21.78193 -20.97575 -19.56963 -17.67576 -16.66953 -16.57639 -15.63789 -15.44451 -15.21694 -14.54559 -14.37425 -14.12827 -13.98860 -13.81719 -13.47288 -12.79191 -12.62587 -12.45980 -11.98065 -11.91957 -11.83677 -11.46844 -11.20911 -11.06064 -10.75916 -10.44304 -9.97989 -9.71941 -9.45424 -9.36410 -8.53748 -8.24332 -7.64522 -7.55712 -7.22561 -6.39227 -4.52155 1.12760 1.63108 2.46187 2.76342 2.79167 3.09016 3.12955 3.15144 3.34208 3.94647 4.12151 4.55384 4.68787 4.74875 4.76250 4.94207 5.02430 5.04608 5.25563 5.44153 5.61238 5.80765 5.87596 5.89429 6.04181 6.11677 6.40007 6.53682 6.69214 6.73113 6.82100 6.91120 7.12216 7.18696 7.27520 7.34849 7.56565 7.75415 8.02325 8.18741 8.23555 8.66560 8.92541 10.12798 10.32855 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.004169 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.590518 B = 6713.893451 C = 7311.465680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.477 5.477 3 C 0.062 3.938 4 C -0.103 4.103 5 C 0.035 3.965 6 C -0.300 4.300 7 C 0.124 3.876 8 N -0.484 5.484 9 C 0.256 3.744 10 C -0.434 4.434 11 H 0.083 0.917 12 C 0.070 3.930 13 N -0.716 5.716 14 Si 0.905 3.095 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.273 1.273 18 C -0.257 4.257 19 C -0.060 4.060 20 C -0.106 4.106 21 C 0.041 3.959 22 N -0.473 5.473 23 C 0.104 3.896 24 C 0.036 3.964 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.174 0.826 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.272 0.728 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 -7.983 1.466 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.160 5.160 3 C -0.065 4.065 4 C -0.109 4.109 5 C 0.028 3.972 6 C -0.323 4.323 7 C -0.041 4.041 8 N -0.197 5.197 9 C 0.131 3.869 10 C -0.466 4.466 11 H 0.101 0.899 12 C -0.155 4.155 13 N -0.338 5.338 14 Si 0.729 3.271 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.198 1.198 18 C -0.280 4.280 19 C -0.072 4.072 20 C -0.126 4.126 21 C -0.108 4.108 22 N -0.182 5.182 23 C -0.064 4.064 24 C -0.073 4.073 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.192 0.808 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.154 0.846 34 H 0.169 0.831 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.722 -8.202 1.505 13.583 hybrid contribution -0.508 0.997 -0.483 1.219 sum -11.230 -7.206 1.022 13.382 Atomic orbital electron populations 1.21954 0.77043 1.04199 1.03042 1.43525 1.05870 1.03995 1.62658 1.22019 0.89765 0.90933 1.03779 1.19151 0.92388 0.90148 1.09219 1.17885 0.91216 0.92764 0.95320 1.21280 0.99183 1.06117 1.05720 1.22435 0.94880 0.91074 0.95749 1.68753 1.27517 1.18576 1.04874 1.18532 0.86723 0.91141 0.90458 1.19633 1.04437 1.08900 1.13594 0.89916 1.26051 0.95255 0.98468 0.95746 1.70147 1.05277 1.31495 1.26854 0.86312 0.79314 0.80688 0.80745 1.18458 1.19844 1.19834 1.21806 1.02132 1.00526 1.03574 1.19343 0.91869 0.93507 1.02438 1.21335 1.00039 0.92469 0.98782 1.21995 0.92741 0.94428 1.01660 1.67489 1.00472 1.37503 1.12697 1.21627 0.98548 0.85334 1.00932 1.19354 0.91093 0.89788 1.07063 0.91192 0.90132 0.89750 0.80842 0.88885 0.86404 0.91717 0.88386 0.84644 0.83082 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 11.02 59.85 0.66 1.29 16 2 N -0.48 -6.35 3.16 -121.53 -0.38 -6.74 16 3 C 0.06 0.96 11.18 -16.46 -0.18 0.78 16 4 C -0.10 -1.94 5.79 -103.27 -0.60 -2.54 16 5 C 0.04 0.78 5.81 -104.65 -0.61 0.17 16 6 C -0.30 -6.73 9.89 -38.80 -0.38 -7.11 16 7 C 0.12 2.99 11.16 -17.62 -0.20 2.79 16 8 N -0.48 -13.31 7.85 -11.23 -0.09 -13.40 16 9 C 0.26 6.95 6.55 -85.03 -0.56 6.39 16 10 C -0.43 -11.54 9.14 -37.69 -0.34 -11.89 16 11 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 12 C 0.07 1.77 5.50 -17.34 -0.10 1.68 16 13 N -0.72 -19.06 11.46 55.55 0.64 -18.42 16 14 Si 0.91 18.47 29.56 -169.99 -5.02 13.45 16 15 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 18 C -0.26 -6.23 9.56 -38.31 -0.37 -6.59 16 19 C -0.06 -1.07 6.42 -104.97 -0.67 -1.74 16 20 C -0.11 -1.74 10.12 -39.62 -0.40 -2.14 16 21 C 0.04 0.61 11.11 -17.91 -0.20 0.41 16 22 N -0.47 -7.13 10.32 -13.39 -0.14 -7.27 16 23 C 0.10 1.43 11.18 -17.35 -0.19 1.24 16 24 C 0.04 0.54 6.82 -84.00 -0.57 -0.03 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.08 0.54 8.13 -51.93 -0.42 0.11 16 28 H 0.17 2.30 8.06 -52.48 -0.42 1.88 16 29 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 31 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 32 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 33 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 311.86 15.07 4.70 4.70 Total: -1.00 -31.62 311.86 -8.79 -40.40 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -3.77 Total: 4.57 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -4.71 Total: -17.29 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.03 Total: -45.83 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.62 -8.79 -40.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245490455.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.815 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds