Wall clock time and date at job start Tue Mar 31 2020 01:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36224 * 124.88907 * 2 1 4 4 C 1.35846 * 109.79623 * 180.02562 * 3 2 1 5 5 C 1.48125 * 126.68312 * 179.97438 * 4 3 2 6 6 C 1.40163 * 120.83102 * 130.02568 * 5 4 3 7 7 C 1.38393 * 119.41292 * 180.25947 * 6 5 4 8 8 N 1.31542 * 121.16466 * 359.39079 * 7 6 5 9 9 C 1.33686 * 121.81353 * 0.64964 * 8 7 6 10 10 C 1.41446 * 119.77461 * 179.67441 * 9 8 7 11 11 H 1.07993 * 120.00276 * 179.97438 * 10 9 8 12 12 C 1.40028 * 119.99574 * 359.97438 * 10 9 8 13 13 N 1.30744 * 120.00230 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99637 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47452 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47071 * 119.99808 * 14 12 10 17 17 H 1.48504 * 109.46880 * 239.99927 * 14 12 10 18 18 C 1.39481 * 120.83234 * 310.00594 * 5 4 3 19 19 C 1.46714 * 106.63561 * 0.26169 * 4 3 2 20 20 C 1.39605 * 135.19320 * 180.51320 * 19 4 3 21 21 C 1.36724 * 118.72250 * 179.56381 * 20 19 4 22 22 N 1.32267 * 121.26519 * 359.69680 * 21 20 19 23 23 C 1.31736 * 122.54849 * 0.02562 * 22 21 20 24 24 C 1.37663 * 124.89488 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47289 * 90.02364 * 1 2 3 26 26 H 1.09005 * 109.46973 * 210.02864 * 1 2 3 27 27 H 1.08999 * 109.46929 * 330.01795 * 1 2 3 28 28 H 1.08009 * 125.10638 * 0.03740 * 3 2 1 29 29 H 1.08002 * 120.28953 * 359.97438 * 6 5 4 30 30 H 1.08005 * 119.41373 * 179.72251 * 7 6 5 31 31 H 0.96994 * 119.99607 * 180.02562 * 13 12 10 32 32 H 1.08003 * 120.59263 * 359.97438 * 18 5 4 33 33 H 1.07999 * 120.63578 * 359.24259 * 20 19 4 34 34 H 1.07995 * 119.36921 * 179.68086 * 21 20 19 35 35 H 1.07997 * 119.86034 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2442 1.1174 0.0000 4 6 3.5558 0.7637 -0.0006 5 6 4.7195 1.6802 -0.0013 6 6 5.7632 1.5167 0.9199 7 6 6.8338 2.3933 0.8965 8 7 6.8949 3.3699 0.0174 9 6 5.9264 3.5701 -0.8821 10 6 6.0331 4.6381 -1.8033 11 1 5.2530 4.8030 -2.5317 12 6 7.1503 5.4817 -1.7707 13 7 8.0944 5.2825 -0.8885 14 14 7.2909 6.8927 -2.9868 15 1 6.0996 6.9028 -3.8733 16 1 7.3688 8.1779 -2.2470 17 1 8.5164 6.7186 -3.8073 18 6 4.8042 2.7272 -0.9189 19 6 3.5953 -0.7029 -0.0074 20 6 4.6054 -1.6666 -0.0022 21 6 4.2531 -2.9877 -0.0030 22 7 2.9839 -3.3597 -0.0026 23 6 1.9914 -2.4934 -0.0018 24 6 2.2526 -1.1291 0.0005 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5143 27 1 -0.3633 0.8901 0.5136 28 1 1.8747 2.1323 0.0006 29 1 5.7299 0.7165 1.6445 30 1 7.6359 2.2701 1.6092 31 1 8.8680 5.8671 -0.8658 32 1 4.0210 2.8862 -1.6453 33 1 5.6450 -1.3742 -0.0029 34 1 5.0261 -3.7419 -0.0043 35 1 0.9704 -2.8454 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245490455.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:56 Heat of formation + Delta-G solvation = 87.632373 kcal Electronic energy + Delta-G solvation = -20088.726521 eV Core-core repulsion = 17051.365302 eV Total energy + Delta-G solvation = -3037.361219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.57476 -39.91162 -39.09975 -35.66823 -34.64573 -32.46718 -31.84444 -31.53838 -30.45312 -27.60511 -27.13802 -24.52184 -23.94029 -23.36097 -22.54462 -20.99702 -19.20165 -18.06401 -17.77949 -17.17687 -16.58676 -16.48650 -16.20830 -15.92120 -15.64099 -15.40868 -15.10529 -14.44016 -14.36141 -14.15345 -13.72541 -13.39399 -13.27377 -12.94124 -12.88040 -12.80684 -12.63583 -12.47281 -12.15687 -11.68982 -11.23967 -10.95942 -10.62200 -10.10666 -9.58202 -9.52312 -9.47893 -8.54377 -8.26858 -6.50335 -0.05667 0.46085 0.89050 0.92076 1.41538 1.51596 1.57005 1.77196 1.84395 2.24163 2.86295 2.96055 3.55375 3.68652 3.73652 3.78722 3.96235 4.07375 4.23983 4.29728 4.48966 4.49760 4.52989 4.65516 4.73268 4.75458 4.82306 4.91223 5.03950 5.21334 5.28194 5.43551 5.53672 5.58913 5.70787 5.93755 5.99627 6.18112 6.24057 6.31241 6.75847 6.97962 7.05778 8.21464 8.48034 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.004169 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.590518 B = 6713.893451 C = 7311.465680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.465 5.465 3 C 0.089 3.911 4 C -0.160 4.160 5 C 0.048 3.952 6 C -0.296 4.296 7 C 0.106 3.894 8 N -0.522 5.522 9 C 0.226 3.774 10 C -0.470 4.470 11 H 0.088 0.912 12 C 0.024 3.976 13 N -0.759 5.759 14 Si 0.987 3.013 15 H -0.253 1.253 16 H -0.265 1.265 17 H -0.268 1.268 18 C -0.274 4.274 19 C -0.086 4.086 20 C -0.133 4.133 21 C 0.048 3.952 22 N -0.487 5.487 23 C 0.118 3.882 24 C 0.026 3.974 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.196 0.804 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.278 0.722 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.176 0.824 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 -8.828 1.127 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.146 5.146 3 C -0.041 4.041 4 C -0.167 4.167 5 C 0.041 3.959 6 C -0.319 4.319 7 C -0.057 4.057 8 N -0.236 5.236 9 C 0.101 3.899 10 C -0.502 4.502 11 H 0.107 0.893 12 C -0.197 4.197 13 N -0.381 5.381 14 Si 0.807 3.193 15 H -0.177 1.177 16 H -0.190 1.190 17 H -0.193 1.193 18 C -0.297 4.297 19 C -0.097 4.097 20 C -0.153 4.153 21 C -0.101 4.101 22 N -0.196 5.196 23 C -0.050 4.050 24 C -0.083 4.083 25 H 0.105 0.895 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.213 0.787 29 H 0.128 0.872 30 H 0.153 0.847 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.193 0.807 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.519 -9.094 1.183 16.336 hybrid contribution 0.180 1.077 -0.289 1.129 sum -13.339 -8.017 0.894 15.589 Atomic orbital electron populations 1.22421 0.73408 1.06484 1.04873 1.43846 1.07798 1.02599 1.60345 1.22286 0.89034 0.92421 1.00349 1.19017 0.92670 0.90576 1.14428 1.18142 0.92110 0.92137 0.93515 1.21504 0.98780 1.05777 1.05822 1.22823 0.96103 0.91030 0.95777 1.68701 1.28589 1.20206 1.06107 1.18976 0.87752 0.92213 0.90976 1.19995 1.05710 1.10036 1.14447 0.89345 1.26992 0.94278 1.00930 0.97487 1.70250 1.06059 1.33002 1.28784 0.85098 0.79463 0.76775 0.77979 1.17652 1.19010 1.19255 1.21906 1.01855 1.01339 1.04605 1.19554 0.93737 0.93083 1.03321 1.21378 0.99612 0.93329 1.01003 1.22338 0.93497 0.94207 1.00028 1.67609 1.00701 1.37817 1.13500 1.22269 1.00019 0.84482 0.98193 1.19526 0.90344 0.90873 1.07538 0.89507 0.87801 0.87722 0.78720 0.87182 0.84661 0.91139 0.87517 0.85680 0.80729 0.79536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 11.02 127.77 1.41 2.17 16 2 N -0.46 -10.84 3.16 -538.40 -1.70 -12.54 16 3 C 0.09 2.59 11.18 83.46 0.93 3.53 16 4 C -0.16 -6.02 5.79 -18.99 -0.11 -6.13 16 5 C 0.05 2.18 5.81 -19.88 -0.12 2.07 16 6 C -0.30 -13.63 9.89 22.77 0.23 -13.41 16 7 C 0.11 5.34 11.16 84.77 0.95 6.29 16 8 N -0.52 -30.05 7.85 -189.43 -1.49 -31.54 16 9 C 0.23 12.80 6.55 40.18 0.26 13.07 16 10 C -0.47 -25.94 9.14 23.49 0.21 -25.73 16 11 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 12 C 0.02 1.26 5.50 85.29 0.47 1.73 16 13 N -0.76 -41.84 11.46 21.84 0.25 -41.59 16 14 Si 0.99 38.49 29.56 68.60 2.03 40.51 16 15 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 16 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 17 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 18 C -0.27 -13.74 9.56 23.09 0.22 -13.52 16 19 C -0.09 -2.99 6.42 -20.09 -0.13 -3.12 16 20 C -0.13 -4.36 10.12 22.25 0.23 -4.14 16 21 C 0.05 1.34 11.11 84.27 0.94 2.28 16 22 N -0.49 -13.46 10.32 -196.26 -2.03 -15.48 16 23 C 0.12 2.86 11.18 84.87 0.95 3.81 16 24 C 0.03 0.73 6.82 39.03 0.27 1.00 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.75 8.13 -2.38 -0.02 0.73 16 27 H 0.10 0.82 8.13 -2.39 -0.02 0.80 16 28 H 0.20 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.14 6.05 8.06 -2.91 -0.02 6.03 16 31 H 0.28 13.80 8.29 -92.71 -0.77 13.03 16 32 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 33 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 34 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.19 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -72.04 311.86 4.87 -67.17 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.11 Total: 23.57 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 6.70 Total: -30.10 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -4.96 Total: -101.15 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.51 kcal Total: -72.04 4.87 -67.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245490455.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.802 kcal (2) G-P(sol) polarization free energy of solvation -72.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds