Wall clock time and date at job start Tue Mar 31 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35907 * 124.82883 * 2 1 4 4 C 1.36589 * 109.71976 * 180.26350 * 3 2 1 5 5 C 1.47385 * 126.75373 * 180.02562 * 4 3 2 6 6 C 1.39622 * 120.81088 * 64.95948 * 5 4 3 7 7 N 1.31559 * 120.61825 * 180.02562 * 6 5 4 8 8 C 1.32321 * 122.54011 * 359.97438 * 7 6 5 9 9 C 1.36335 * 121.57655 * 0.02562 * 8 7 6 10 10 C 1.41186 * 119.13626 * 359.68236 * 9 8 7 11 11 C 1.40724 * 121.12670 * 180.29644 * 10 9 8 12 12 H 1.08002 * 120.00416 * 204.80249 * 11 10 9 13 13 C 1.40084 * 120.00037 * 24.80432 * 11 10 9 14 14 N 1.30754 * 119.99677 * 13.90782 * 13 11 10 15 15 Si 1.86798 * 120.00269 * 193.91063 * 13 11 10 16 16 H 1.48502 * 109.47035 * 59.99911 * 15 13 11 17 17 H 1.48499 * 109.47113 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46994 * 299.99858 * 15 13 11 19 19 C 1.46874 * 106.50129 * 0.02562 * 4 3 2 20 20 C 1.39514 * 135.16890 * 179.97438 * 19 4 3 21 21 C 1.36818 * 118.71966 * 180.02562 * 20 19 4 22 22 N 1.32219 * 121.23928 * 0.02562 * 21 20 19 23 23 C 1.31761 * 122.53985 * 359.97438 * 22 21 20 24 24 C 1.37779 * 124.83692 * 180.30094 * 2 1 3 25 25 H 1.08997 * 109.47490 * 269.69026 * 1 2 3 26 26 H 1.08991 * 109.47572 * 29.70076 * 1 2 3 27 27 H 1.09009 * 109.46970 * 149.70030 * 1 2 3 28 28 H 1.08004 * 125.14197 * 0.26553 * 3 2 1 29 29 H 1.07998 * 119.69322 * 359.97438 * 6 5 4 30 30 H 1.07997 * 119.21194 * 180.02562 * 8 7 6 31 31 H 1.07998 * 120.43396 * 179.97438 * 9 8 7 32 32 H 0.96998 * 120.00011 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.64066 * 0.03355 * 20 19 4 34 34 H 1.07998 * 119.38441 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.85381 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2412 1.1156 0.0000 4 6 3.5598 0.7596 -0.0059 5 6 4.7191 1.6698 -0.0074 6 6 4.9721 2.5073 1.0807 7 7 6.0077 3.3186 1.0752 8 6 6.8530 3.3868 0.0595 9 6 6.6977 2.6125 -1.0518 10 6 5.6121 1.7121 -1.1160 11 6 5.4154 0.8886 -2.2401 12 1 4.4277 0.5187 -2.4724 13 6 6.5009 0.5487 -3.0578 14 7 7.7229 0.7586 -2.6428 15 14 6.2024 -0.2043 -4.7410 16 1 5.4091 0.7374 -5.5710 17 1 7.5052 -0.4697 -5.4026 18 1 5.4558 -1.4788 -4.5878 19 6 3.5955 -0.7087 -0.0105 20 6 4.6028 -1.6739 -0.0176 21 6 4.2474 -2.9951 -0.0207 22 7 2.9776 -3.3636 -0.0176 23 6 1.9874 -2.4944 -0.0110 24 6 2.2520 -1.1308 -0.0059 25 1 -0.3634 -0.0056 1.0276 26 1 -0.3634 0.8926 -0.5091 27 1 -0.3633 -0.8874 -0.5185 28 1 1.8713 2.1303 0.0041 29 1 4.3111 2.4895 1.9346 30 1 7.6859 4.0723 0.1121 31 1 7.3986 2.6834 -1.8704 32 1 8.4745 0.5236 -3.2092 33 1 5.6431 -1.3838 -0.0205 34 1 5.0185 -3.7513 -0.0258 35 1 0.9655 -2.8437 -0.0083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245491218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:01 Heat of formation + Delta-G solvation = 95.953559 kcal Electronic energy + Delta-G solvation = -20910.168328 eV Core-core repulsion = 17873.167943 eV Total energy + Delta-G solvation = -3037.000385 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.04971 -38.23210 -37.61785 -34.21845 -33.20798 -30.72744 -30.22514 -29.99679 -28.74100 -26.34391 -25.42852 -22.98181 -22.18962 -21.64163 -21.04256 -19.10570 -17.59964 -16.79420 -16.33096 -15.62697 -15.23011 -15.14240 -14.50455 -14.31931 -14.11852 -13.76310 -13.46472 -13.17830 -12.69862 -12.54118 -12.42991 -12.13698 -11.65140 -11.57723 -11.43981 -11.30149 -11.16177 -10.96878 -10.36692 -9.86241 -9.49927 -9.33296 -9.14913 -8.19178 -8.01929 -7.96496 -7.65639 -7.05460 -6.78275 -4.62333 1.49929 1.97437 2.56471 2.79573 2.98259 3.01797 3.10303 3.22174 3.35149 3.81398 4.47054 4.61266 4.81968 4.95260 5.08447 5.21758 5.27328 5.36437 5.44057 5.61446 5.77677 5.85624 5.95763 6.20273 6.27313 6.36665 6.49579 6.81166 6.85811 6.91938 7.08514 7.14525 7.25151 7.35812 7.46486 7.57502 7.63965 7.86899 8.08683 8.43128 8.50983 8.68636 8.73976 9.62559 9.98668 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.008142 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.296899 B = 3438.227370 C = 4575.707303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.479 5.479 3 C 0.032 3.968 4 C -0.050 4.050 5 C -0.203 4.203 6 C 0.126 3.874 7 N -0.580 5.580 8 C 0.079 3.921 9 C -0.209 4.209 10 C 0.145 3.855 11 C -0.430 4.430 12 H 0.080 0.920 13 C 0.078 3.922 14 N -0.781 5.781 15 Si 0.906 3.094 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.262 1.262 19 C -0.053 4.053 20 C -0.087 4.087 21 C 0.032 3.968 22 N -0.475 5.475 23 C 0.093 3.907 24 C 0.034 3.966 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.167 0.833 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.285 0.715 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 -2.645 0.932 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.163 5.163 3 C -0.094 4.094 4 C -0.058 4.058 5 C -0.210 4.210 6 C -0.032 4.032 7 N -0.295 5.295 8 C -0.069 4.069 9 C -0.231 4.231 10 C 0.137 3.863 11 C -0.460 4.460 12 H 0.098 0.902 13 C -0.142 4.142 14 N -0.406 5.406 15 Si 0.730 3.270 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.064 4.064 20 C -0.107 4.107 21 C -0.118 4.118 22 N -0.184 5.184 23 C -0.075 4.075 24 C -0.075 4.075 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.184 0.816 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.425 -2.989 1.578 10.013 hybrid contribution 0.015 0.011 -1.627 1.627 sum -9.410 -2.979 -0.049 9.870 Atomic orbital electron populations 1.21866 0.77726 1.03857 1.02530 1.43322 1.05424 1.04078 1.63453 1.22073 0.90037 0.90490 1.06806 1.18729 0.91377 0.89692 1.05967 1.18850 1.00422 1.04431 0.97258 1.22106 0.93952 0.91867 0.95264 1.67295 1.06740 1.25487 1.29943 1.21677 0.96638 0.97846 0.90725 1.21947 1.02362 0.98809 0.99979 1.17746 0.89171 0.89106 0.90262 1.19410 0.95338 1.24855 1.06413 0.90179 1.25993 0.94498 0.94126 0.99590 1.69753 0.99441 1.34930 1.36439 0.86363 0.78820 0.80445 0.81328 1.18691 1.20046 1.18662 1.19399 0.91270 0.94066 1.01714 1.21322 1.00312 0.92220 0.96863 1.21937 0.92532 0.94579 1.02761 1.67421 1.00568 1.37547 1.12827 1.21513 0.98263 0.85520 1.02154 1.19346 0.91344 0.89569 1.07207 0.91650 0.90133 0.90445 0.81615 0.86394 0.86627 0.85470 0.90420 0.84755 0.83540 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 11.01 59.85 0.66 1.46 16 2 N -0.48 -7.29 3.15 -121.40 -0.38 -7.67 16 3 C 0.03 0.54 11.26 -16.34 -0.18 0.36 16 4 C -0.05 -1.04 4.70 -103.28 -0.49 -1.53 16 5 C -0.20 -4.73 5.85 -104.05 -0.61 -5.34 16 6 C 0.13 2.87 10.97 -17.15 -0.19 2.68 16 7 N -0.58 -13.87 10.31 -13.32 -0.14 -14.01 16 8 C 0.08 1.86 11.08 -18.03 -0.20 1.66 16 9 C -0.21 -5.21 8.72 -39.15 -0.34 -5.55 16 10 C 0.15 3.66 5.63 -106.23 -0.60 3.06 16 11 C -0.43 -10.73 8.39 -37.95 -0.32 -11.05 16 12 H 0.08 2.03 7.28 -52.49 -0.38 1.65 16 13 C 0.08 1.86 5.25 -17.32 -0.09 1.77 16 14 N -0.78 -18.93 10.81 55.55 0.60 -18.33 16 15 Si 0.91 18.23 29.58 -169.99 -5.03 13.20 16 16 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 17 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 19 C -0.05 -1.08 6.13 -104.95 -0.64 -1.73 16 20 C -0.09 -1.75 10.12 -39.62 -0.40 -2.15 16 21 C 0.03 0.57 11.12 -17.90 -0.20 0.37 16 22 N -0.47 -8.51 10.32 -13.37 -0.14 -8.65 16 23 C 0.09 1.53 11.17 -17.34 -0.19 1.34 16 24 C 0.03 0.60 6.82 -83.97 -0.57 0.02 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.65 8.13 -51.93 -0.42 0.22 16 27 H 0.08 0.65 8.12 -51.92 -0.42 0.23 16 28 H 0.17 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 30 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 31 H 0.13 3.22 6.15 -52.49 -0.32 2.90 16 32 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 33 H 0.13 2.84 8.06 -52.49 -0.42 2.41 16 34 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -29.10 308.16 -8.45 -37.55 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.64 Total: 7.87 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -4.36 Total: -14.61 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.06 Total: -48.66 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.10 -8.45 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245491218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.501 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds