Wall clock time and date at job start Tue Mar 31 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35907 * 124.82883 * 2 1 4 4 C 1.36589 * 109.71976 * 180.26350 * 3 2 1 5 5 C 1.47385 * 126.75373 * 180.02562 * 4 3 2 6 6 C 1.39622 * 120.81088 * 64.95948 * 5 4 3 7 7 N 1.31559 * 120.61825 * 180.02562 * 6 5 4 8 8 C 1.32321 * 122.54011 * 359.97438 * 7 6 5 9 9 C 1.36335 * 121.57655 * 0.02562 * 8 7 6 10 10 C 1.41186 * 119.13626 * 359.68236 * 9 8 7 11 11 C 1.40724 * 121.12670 * 180.29644 * 10 9 8 12 12 H 1.08002 * 120.00416 * 204.80249 * 11 10 9 13 13 C 1.40084 * 120.00037 * 24.80432 * 11 10 9 14 14 N 1.30754 * 119.99677 * 13.90782 * 13 11 10 15 15 Si 1.86798 * 120.00269 * 193.91063 * 13 11 10 16 16 H 1.48502 * 109.47035 * 59.99911 * 15 13 11 17 17 H 1.48499 * 109.47113 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46994 * 299.99858 * 15 13 11 19 19 C 1.46874 * 106.50129 * 0.02562 * 4 3 2 20 20 C 1.39514 * 135.16890 * 179.97438 * 19 4 3 21 21 C 1.36818 * 118.71966 * 180.02562 * 20 19 4 22 22 N 1.32219 * 121.23928 * 0.02562 * 21 20 19 23 23 C 1.31761 * 122.53985 * 359.97438 * 22 21 20 24 24 C 1.37779 * 124.83692 * 180.30094 * 2 1 3 25 25 H 1.08997 * 109.47490 * 269.69026 * 1 2 3 26 26 H 1.08991 * 109.47572 * 29.70076 * 1 2 3 27 27 H 1.09009 * 109.46970 * 149.70030 * 1 2 3 28 28 H 1.08004 * 125.14197 * 0.26553 * 3 2 1 29 29 H 1.07998 * 119.69322 * 359.97438 * 6 5 4 30 30 H 1.07997 * 119.21194 * 180.02562 * 8 7 6 31 31 H 1.07998 * 120.43396 * 179.97438 * 9 8 7 32 32 H 0.96998 * 120.00011 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.64066 * 0.03355 * 20 19 4 34 34 H 1.07998 * 119.38441 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.85381 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2412 1.1156 0.0000 4 6 3.5598 0.7596 -0.0059 5 6 4.7191 1.6698 -0.0074 6 6 4.9721 2.5073 1.0807 7 7 6.0077 3.3186 1.0752 8 6 6.8530 3.3868 0.0595 9 6 6.6977 2.6125 -1.0518 10 6 5.6121 1.7121 -1.1160 11 6 5.4154 0.8886 -2.2401 12 1 4.4277 0.5187 -2.4724 13 6 6.5009 0.5487 -3.0578 14 7 7.7229 0.7586 -2.6428 15 14 6.2024 -0.2043 -4.7410 16 1 5.4091 0.7374 -5.5710 17 1 7.5052 -0.4697 -5.4026 18 1 5.4558 -1.4788 -4.5878 19 6 3.5955 -0.7087 -0.0105 20 6 4.6028 -1.6739 -0.0176 21 6 4.2474 -2.9951 -0.0207 22 7 2.9776 -3.3636 -0.0176 23 6 1.9874 -2.4944 -0.0110 24 6 2.2520 -1.1308 -0.0059 25 1 -0.3634 -0.0056 1.0276 26 1 -0.3634 0.8926 -0.5091 27 1 -0.3633 -0.8874 -0.5185 28 1 1.8713 2.1303 0.0041 29 1 4.3111 2.4895 1.9346 30 1 7.6859 4.0723 0.1121 31 1 7.3986 2.6834 -1.8704 32 1 8.4745 0.5236 -3.2092 33 1 5.6431 -1.3838 -0.0205 34 1 5.0185 -3.7513 -0.0258 35 1 0.9655 -2.8437 -0.0083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245491218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:01 Heat of formation + Delta-G solvation = 80.270728 kcal Electronic energy + Delta-G solvation = -20910.848387 eV Core-core repulsion = 17873.167943 eV Total energy + Delta-G solvation = -3037.680444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.39094 -40.01589 -38.96922 -36.03464 -34.59630 -32.40875 -31.81282 -31.39613 -30.19185 -28.00355 -26.80310 -24.36163 -23.78049 -23.38165 -22.51922 -20.58875 -19.42145 -18.13515 -17.66325 -17.37926 -16.61041 -16.43629 -16.20120 -15.97054 -15.45816 -15.21390 -14.98866 -14.40849 -14.34845 -14.18144 -13.93702 -13.29173 -13.18711 -13.12279 -13.00166 -12.84789 -12.58383 -12.49266 -12.02329 -11.67955 -11.27965 -10.76646 -10.56001 -9.91157 -9.87379 -9.51049 -9.34611 -8.74510 -8.32367 -6.49294 0.09903 0.58402 0.81728 1.01463 1.32877 1.42525 1.52778 1.85396 1.95371 2.13514 2.77774 3.06569 3.63906 3.69570 3.82109 3.94629 4.00629 4.07993 4.17111 4.47181 4.53837 4.55872 4.62705 4.76713 4.80344 4.84871 4.99448 5.06553 5.09107 5.30031 5.43697 5.49803 5.62023 5.73165 5.75790 6.02235 6.17478 6.24602 6.42830 6.57545 6.83408 6.88733 7.13775 7.77366 8.21901 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.008142 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.296899 B = 3438.227370 C = 4575.707303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.466 5.466 3 C 0.064 3.936 4 C -0.109 4.109 5 C -0.195 4.195 6 C 0.114 3.886 7 N -0.590 5.590 8 C 0.074 3.926 9 C -0.230 4.230 10 C 0.117 3.883 11 C -0.445 4.445 12 H 0.069 0.931 13 C 0.043 3.957 14 N -0.808 5.808 15 Si 0.970 3.030 16 H -0.258 1.258 17 H -0.262 1.262 18 H -0.268 1.268 19 C -0.080 4.080 20 C -0.119 4.119 21 C 0.035 3.965 22 N -0.488 5.488 23 C 0.111 3.889 24 C 0.024 3.976 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.196 0.804 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.292 0.708 33 H 0.105 0.895 34 H 0.165 0.835 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.447 -3.286 0.700 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.148 5.148 3 C -0.065 4.065 4 C -0.116 4.116 5 C -0.201 4.201 6 C -0.042 4.042 7 N -0.305 5.305 8 C -0.075 4.075 9 C -0.253 4.253 10 C 0.109 3.891 11 C -0.475 4.475 12 H 0.087 0.913 13 C -0.175 4.175 14 N -0.433 5.433 15 Si 0.791 3.209 16 H -0.182 1.182 17 H -0.186 1.186 18 H -0.192 1.192 19 C -0.092 4.092 20 C -0.139 4.139 21 C -0.113 4.113 22 N -0.197 5.197 23 C -0.058 4.058 24 C -0.085 4.085 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.213 0.787 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.182 0.818 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -12.477 -3.643 1.364 13.069 hybrid contribution 0.799 0.215 -1.461 1.679 sum -11.678 -3.428 -0.098 12.171 Atomic orbital electron populations 1.22344 0.73826 1.06052 1.04684 1.43663 1.07508 1.02588 1.60997 1.22409 0.89057 0.92122 1.02919 1.18730 0.92227 0.89797 1.10876 1.19102 1.00702 1.03998 0.96276 1.22521 0.94054 0.91694 0.95968 1.67349 1.07178 1.26076 1.29888 1.21974 0.97222 0.97946 0.90331 1.21937 1.02904 0.99989 1.00443 1.18125 0.90097 0.89546 0.91327 1.19396 0.95215 1.25604 1.07327 0.91326 1.26693 0.94017 0.94295 1.02515 1.69793 1.00154 1.35668 1.37682 0.85424 0.79105 0.79187 0.77219 1.18207 1.18623 1.19233 1.19617 0.92963 0.94124 1.02460 1.21196 0.99132 0.93531 1.00052 1.22163 0.93471 0.94092 1.01611 1.67540 1.00506 1.37852 1.13848 1.22200 0.99736 0.84784 0.99037 1.19478 0.90557 0.90758 1.07743 0.89420 0.87913 0.88485 0.78675 0.83938 0.84491 0.86601 0.89713 0.87710 0.81764 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 11.01 127.77 1.41 2.41 16 2 N -0.47 -12.57 3.15 -537.99 -1.70 -14.26 16 3 C 0.06 2.03 11.26 83.68 0.94 2.97 16 4 C -0.11 -4.52 4.70 -18.99 -0.09 -4.61 16 5 C -0.19 -9.28 5.85 -19.49 -0.11 -9.40 16 6 C 0.11 5.24 10.97 85.07 0.93 6.18 16 7 N -0.59 -28.50 10.31 -196.06 -2.02 -30.52 16 8 C 0.07 3.57 11.08 84.18 0.93 4.50 16 9 C -0.23 -11.98 8.72 22.55 0.20 -11.78 16 10 C 0.12 6.14 5.63 -20.91 -0.12 6.03 16 11 C -0.45 -23.10 8.39 23.33 0.20 -22.90 16 12 H 0.07 3.62 7.28 -2.91 -0.02 3.60 16 13 C 0.04 2.08 5.25 85.30 0.45 2.53 16 14 N -0.81 -40.59 10.81 21.85 0.24 -40.36 16 15 Si 0.97 37.93 29.58 68.60 2.03 39.96 16 16 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 17 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 18 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 19 C -0.08 -3.31 6.13 -20.08 -0.12 -3.43 16 20 C -0.12 -4.97 10.12 22.24 0.23 -4.75 16 21 C 0.04 1.28 11.12 84.30 0.94 2.21 16 22 N -0.49 -16.65 10.32 -196.21 -2.02 -18.67 16 23 C 0.11 3.29 11.17 84.86 0.95 4.24 16 24 C 0.02 0.80 6.82 39.00 0.27 1.06 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 1.08 8.13 -2.39 -0.02 1.06 16 27 H 0.10 1.07 8.12 -2.38 -0.02 1.05 16 28 H 0.20 4.93 8.06 -2.91 -0.02 4.90 16 29 H 0.14 5.66 8.06 -2.91 -0.02 5.64 16 30 H 0.14 5.84 8.06 -2.91 -0.02 5.82 16 31 H 0.12 6.18 6.15 -2.91 -0.02 6.16 16 32 H 0.29 13.29 8.29 -92.71 -0.77 12.53 16 33 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.17 5.10 8.06 -2.91 -0.02 5.07 16 35 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -65.78 308.16 4.62 -61.15 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 1.11 Total: 27.44 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 6.99 Total: -24.75 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -5.51 Total: -103.81 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -65.78 4.62 -61.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245491218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.425 kcal (2) G-P(sol) polarization free energy of solvation -65.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds