Wall clock time and date at job start Tue Mar 31 2020 00:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38069 * 120.38602 * 2 1 4 4 C 1.39996 * 118.39346 * 179.76172 * 3 2 1 5 5 C 1.48260 * 120.45463 * 180.26248 * 4 3 2 6 6 C 1.39846 * 119.54298 * 0.02562 * 5 4 3 7 7 C 1.37685 * 121.16978 * 179.71078 * 6 5 4 8 8 C 1.39606 * 120.18964 * 0.55886 * 7 6 5 9 9 C 1.43197 * 120.45581 * 179.69991 * 8 7 6 10 10 N 8.99980 * 128.99623 * 0.26883 * 2 1 3 11 11 C 1.46545 * 119.08988 * 359.72346 * 8 7 6 12 12 C 1.40850 * 120.55606 * 179.97438 * 11 8 7 13 13 H 1.08006 * 119.99614 * 24.51996 * 12 11 8 14 14 C 1.40223 * 120.00675 * 204.52000 * 12 11 8 15 15 N 1.30667 * 119.99468 * 17.43542 * 14 12 11 16 16 Si 1.86794 * 120.00407 * 197.43928 * 14 12 11 17 17 H 1.48500 * 109.47369 * 89.99928 * 16 14 12 18 18 H 1.48506 * 109.47160 * 210.00036 * 16 14 12 19 19 H 1.48507 * 109.46755 * 329.99890 * 16 14 12 20 20 C 1.38648 * 119.53427 * 180.27496 * 5 4 3 21 21 C 1.39267 * 119.08436 * 0.53508 * 4 3 2 22 22 N 1.31764 * 120.67545 * 359.70380 * 21 4 3 23 23 C 1.32483 * 121.75325 * 0.02562 * 22 21 4 24 24 N 1.38869 * 119.57047 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.46907 * 269.72246 * 1 2 3 26 26 H 1.08996 * 109.47330 * 149.72197 * 1 2 3 27 27 H 1.09007 * 109.46722 * 29.72065 * 1 2 3 28 28 H 1.07998 * 120.80048 * 0.03159 * 3 2 1 29 29 H 1.07999 * 119.41123 * 359.97438 * 6 5 4 30 30 H 1.08005 * 119.90981 * 180.27987 * 7 6 5 31 31 H 0.96998 * 119.99787 * 184.64859 * 15 14 12 32 32 H 1.08001 * 120.13897 * 0.02562 * 20 5 4 33 33 H 1.07999 * 119.66307 * 179.73337 * 21 4 3 34 34 H 0.96991 * 120.00163 * 180.02562 * 24 23 22 35 35 H 0.96999 * 119.99767 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1910 0.0000 4 6 3.6045 1.1424 0.0051 5 6 4.3999 2.3935 0.0112 6 6 3.7431 3.6282 0.0123 7 6 4.4485 4.8105 0.0239 8 6 5.8445 4.7952 0.0229 9 6 6.5838 6.0216 0.0284 10 7 7.1703 6.9945 0.0328 11 6 6.5429 3.5069 0.0158 12 6 7.9504 3.4555 0.0141 13 1 8.5215 4.2842 0.4059 14 6 8.6103 2.3284 -0.4962 15 7 7.9701 1.4899 -1.2671 16 14 10.4045 2.0255 -0.0738 17 1 10.4908 1.2081 1.1630 18 1 11.0611 1.3019 -1.1922 19 1 11.0881 3.3259 0.1435 20 6 5.7846 2.3231 0.0104 21 6 4.2387 -0.0975 -0.0014 22 7 3.5360 -1.2121 -0.0063 23 6 2.2112 -1.2010 -0.0058 24 7 1.5159 -2.4030 -0.0117 25 1 -0.3633 -0.0050 1.0276 26 1 -0.3634 -0.8874 -0.5181 27 1 -0.3633 0.8926 -0.5095 28 1 1.6849 2.1373 0.0005 29 1 2.6635 3.6546 0.0084 30 1 3.9204 5.7527 0.0291 31 1 8.4053 0.6759 -1.5652 32 1 6.2787 1.3628 0.0050 33 1 5.3177 -0.1459 -0.0019 34 1 0.5459 -2.4023 -0.0118 35 1 2.0002 -3.2435 -0.0158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245536394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:11 Heat of formation + Delta-G solvation = 69.538913 kcal Electronic energy + Delta-G solvation = -19974.102250 eV Core-core repulsion = 16935.956440 eV Total energy + Delta-G solvation = -3038.145810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03110 -37.73364 -35.36886 -34.65648 -34.03102 -33.18214 -31.22242 -29.98232 -28.16572 -26.83325 -25.71626 -23.06746 -22.81939 -20.84833 -20.35276 -17.92352 -17.32638 -17.21133 -16.84557 -15.55275 -14.92308 -14.73980 -14.34705 -13.97610 -13.62480 -13.29861 -12.90700 -12.83070 -12.78014 -12.66451 -12.56946 -12.21509 -11.74571 -11.56046 -11.45632 -11.37587 -11.21929 -11.10636 -10.64692 -10.30683 -10.07805 -9.79255 -9.50122 -9.22574 -9.00641 -8.11317 -7.76737 -7.18460 -6.79800 -4.71757 1.35275 1.65075 2.46368 2.66554 2.94709 2.99019 3.08875 3.69722 3.71950 3.93396 4.00843 4.46793 4.49969 4.88396 5.04019 5.23240 5.37338 5.43790 5.50180 5.55523 5.60509 5.64134 5.87160 6.02525 6.18438 6.32320 6.40271 6.58453 6.72168 6.86642 6.88349 7.04578 7.21817 7.43377 7.46962 7.60867 7.67053 7.77540 7.88119 8.20689 8.43768 8.54120 8.54442 8.84409 9.76544 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.005314 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.793191 B = 5267.431839 C = 6824.944705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.210 4.210 3 C -0.033 4.033 4 C -0.124 4.124 5 C -0.003 4.003 6 C -0.240 4.240 7 C -0.026 4.026 8 C -0.189 4.189 9 C 0.300 3.700 10 N -0.512 5.512 11 C 0.152 3.848 12 C -0.429 4.429 13 H 0.086 0.914 14 C 0.077 3.923 15 N -0.764 5.764 16 Si 0.912 3.088 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.258 1.258 20 C -0.149 4.149 21 C 0.151 3.849 22 N -0.542 5.542 23 C 0.386 3.614 24 N -0.858 5.858 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.134 0.866 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.291 0.709 32 H 0.131 0.869 33 H 0.163 0.837 34 H 0.402 0.598 35 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.079 -9.093 1.541 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.217 4.217 3 C -0.059 4.059 4 C -0.128 4.128 5 C -0.005 4.005 6 C -0.260 4.260 7 C -0.047 4.047 8 C -0.195 4.195 9 C -0.009 4.009 10 N -0.191 5.191 11 C 0.147 3.853 12 C -0.457 4.457 13 H 0.104 0.896 14 C -0.145 4.145 15 N -0.387 5.387 16 Si 0.736 3.264 17 H -0.186 1.186 18 H -0.198 1.198 19 H -0.182 1.182 20 C -0.168 4.168 21 C -0.006 4.006 22 N -0.258 5.258 23 C 0.150 3.850 24 N -0.404 5.404 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.180 0.820 34 H 0.233 0.767 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.676 -8.536 1.332 12.972 hybrid contribution -0.064 -0.149 0.035 0.166 sum -9.741 -8.685 1.367 13.122 Atomic orbital electron populations 1.20518 0.91072 1.02191 1.01685 1.19994 0.96499 0.92520 1.12675 1.21357 0.93331 0.97227 0.93969 1.19783 0.93163 0.94676 1.05208 1.18316 0.92899 0.90302 0.98978 1.20088 0.97482 0.91339 1.17058 1.20359 0.91758 0.96690 0.95915 1.16977 0.91025 0.86491 1.25008 1.25813 0.91836 0.92138 0.91104 1.81016 1.09987 1.12851 1.15287 1.18331 0.92578 0.88613 0.85817 1.19785 0.91636 1.02231 1.32031 0.89640 1.26066 1.01700 0.94954 0.91810 1.69715 1.39834 1.08959 1.20165 0.86193 0.80789 0.80055 0.79410 1.18603 1.19772 1.18158 1.21364 0.90970 0.98671 1.05823 1.22740 0.99940 0.85997 0.91902 1.67142 1.05582 1.32350 1.20730 1.18172 0.88525 0.86023 0.92291 1.42152 1.08510 1.05117 1.84608 0.91781 0.92456 0.91460 0.84807 0.88363 0.88274 0.89751 0.85171 0.81977 0.76704 0.77216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.58 36.00 0.34 -0.59 16 2 C -0.21 -2.89 5.91 -104.32 -0.62 -3.51 16 3 C -0.03 -0.52 9.18 -38.99 -0.36 -0.88 16 4 C -0.12 -2.25 5.89 -104.74 -0.62 -2.87 16 5 C 0.00 -0.06 5.86 -105.02 -0.62 -0.68 16 6 C -0.24 -4.62 9.38 -39.18 -0.37 -4.99 16 7 C -0.03 -0.53 9.74 -39.27 -0.38 -0.92 16 8 C -0.19 -4.32 5.95 -104.12 -0.62 -4.94 16 9 C 0.30 7.08 14.28 -22.47 -0.32 6.76 16 10 N -0.51 -12.43 18.54 41.84 0.78 -11.65 16 11 C 0.15 3.64 5.73 -104.68 -0.60 3.04 16 12 C -0.43 -10.43 8.58 -37.85 -0.32 -10.75 16 13 H 0.09 2.12 7.37 -52.48 -0.39 1.73 16 14 C 0.08 1.74 5.16 -17.30 -0.09 1.65 16 15 N -0.76 -17.26 10.94 55.56 0.61 -16.66 16 16 Si 0.91 17.21 29.60 -169.99 -5.03 12.17 16 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 20 C -0.15 -3.34 8.07 -38.54 -0.31 -3.65 16 21 C 0.15 2.74 10.58 -17.20 -0.18 2.56 16 22 N -0.54 -9.26 10.38 -12.16 -0.13 -9.39 16 23 C 0.39 5.65 7.73 -155.04 -1.20 4.45 16 24 N -0.86 -8.95 8.97 31.13 0.28 -8.67 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.45 6.55 -51.93 -0.34 0.11 16 27 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.13 1.83 6.24 -52.49 -0.33 1.50 16 29 H 0.10 1.62 6.15 -52.49 -0.32 1.29 16 30 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.29 5.92 8.30 -40.82 -0.34 5.59 16 32 H 0.13 2.91 4.26 -52.49 -0.22 2.68 16 33 H 0.16 2.96 6.16 -52.49 -0.32 2.64 16 34 H 0.40 3.07 6.78 -40.82 -0.28 2.79 16 35 H 0.40 3.77 8.95 -40.82 -0.37 3.40 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -27.04 306.43 -8.10 -35.14 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -2.97 Total: 9.73 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -6.26 Total: -15.29 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 1.54 Total: -46.37 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.04 -8.10 -35.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.680 kcal (2) G-P(sol) polarization free energy of solvation -27.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds