Wall clock time and date at job start Tue Mar 31 2020 00:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38069 * 120.38602 * 2 1 4 4 C 1.39996 * 118.39346 * 179.76172 * 3 2 1 5 5 C 1.48260 * 120.45463 * 180.26248 * 4 3 2 6 6 C 1.39846 * 119.54298 * 0.02562 * 5 4 3 7 7 C 1.37685 * 121.16978 * 179.71078 * 6 5 4 8 8 C 1.39606 * 120.18964 * 0.55886 * 7 6 5 9 9 C 1.43197 * 120.45581 * 179.69991 * 8 7 6 10 10 N 8.99980 * 128.99623 * 0.26883 * 2 1 3 11 11 C 1.46545 * 119.08988 * 359.72346 * 8 7 6 12 12 C 1.40850 * 120.55606 * 179.97438 * 11 8 7 13 13 H 1.08006 * 119.99614 * 24.51996 * 12 11 8 14 14 C 1.40223 * 120.00675 * 204.52000 * 12 11 8 15 15 N 1.30667 * 119.99468 * 17.43542 * 14 12 11 16 16 Si 1.86794 * 120.00407 * 197.43928 * 14 12 11 17 17 H 1.48500 * 109.47369 * 89.99928 * 16 14 12 18 18 H 1.48506 * 109.47160 * 210.00036 * 16 14 12 19 19 H 1.48507 * 109.46755 * 329.99890 * 16 14 12 20 20 C 1.38648 * 119.53427 * 180.27496 * 5 4 3 21 21 C 1.39267 * 119.08436 * 0.53508 * 4 3 2 22 22 N 1.31764 * 120.67545 * 359.70380 * 21 4 3 23 23 C 1.32483 * 121.75325 * 0.02562 * 22 21 4 24 24 N 1.38869 * 119.57047 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.46907 * 269.72246 * 1 2 3 26 26 H 1.08996 * 109.47330 * 149.72197 * 1 2 3 27 27 H 1.09007 * 109.46722 * 29.72065 * 1 2 3 28 28 H 1.07998 * 120.80048 * 0.03159 * 3 2 1 29 29 H 1.07999 * 119.41123 * 359.97438 * 6 5 4 30 30 H 1.08005 * 119.90981 * 180.27987 * 7 6 5 31 31 H 0.96998 * 119.99787 * 184.64859 * 15 14 12 32 32 H 1.08001 * 120.13897 * 0.02562 * 20 5 4 33 33 H 1.07999 * 119.66307 * 179.73337 * 21 4 3 34 34 H 0.96991 * 120.00163 * 180.02562 * 24 23 22 35 35 H 0.96999 * 119.99767 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1910 0.0000 4 6 3.6045 1.1424 0.0051 5 6 4.3999 2.3935 0.0112 6 6 3.7431 3.6282 0.0123 7 6 4.4485 4.8105 0.0239 8 6 5.8445 4.7952 0.0229 9 6 6.5838 6.0216 0.0284 10 7 7.1703 6.9945 0.0328 11 6 6.5429 3.5069 0.0158 12 6 7.9504 3.4555 0.0141 13 1 8.5215 4.2842 0.4059 14 6 8.6103 2.3284 -0.4962 15 7 7.9701 1.4899 -1.2671 16 14 10.4045 2.0255 -0.0738 17 1 10.4908 1.2081 1.1630 18 1 11.0611 1.3019 -1.1922 19 1 11.0881 3.3259 0.1435 20 6 5.7846 2.3231 0.0104 21 6 4.2387 -0.0975 -0.0014 22 7 3.5360 -1.2121 -0.0063 23 6 2.2112 -1.2010 -0.0058 24 7 1.5159 -2.4030 -0.0117 25 1 -0.3633 -0.0050 1.0276 26 1 -0.3634 -0.8874 -0.5181 27 1 -0.3633 0.8926 -0.5095 28 1 1.6849 2.1373 0.0005 29 1 2.6635 3.6546 0.0084 30 1 3.9204 5.7527 0.0291 31 1 8.4053 0.6759 -1.5652 32 1 6.2787 1.3628 0.0050 33 1 5.3177 -0.1459 -0.0019 34 1 0.5459 -2.4023 -0.0118 35 1 2.0002 -3.2435 -0.0158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245536394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:10 Heat of formation + Delta-G solvation = 55.535658 kcal Electronic energy + Delta-G solvation = -19974.709477 eV Core-core repulsion = 16935.956440 eV Total energy + Delta-G solvation = -3038.753037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25142 -39.34121 -37.08103 -36.11834 -35.48895 -34.34539 -32.59836 -31.64972 -29.44947 -28.08526 -27.27413 -24.50369 -24.11170 -22.42258 -21.71826 -19.54879 -18.80201 -18.40158 -18.14059 -17.13677 -16.31906 -16.00386 -15.47096 -15.43926 -15.08891 -14.66301 -14.50748 -14.39941 -14.29812 -13.89183 -13.59305 -13.42345 -13.34523 -13.23914 -13.04397 -12.84487 -12.71231 -12.56019 -12.14830 -11.72284 -11.59354 -11.41629 -11.11569 -10.44028 -10.27739 -9.49992 -9.45003 -8.83390 -8.16898 -6.49996 -0.09469 0.44942 0.94410 1.05768 1.37426 1.48666 1.54576 2.07033 2.15229 2.41192 2.69622 2.71073 3.11163 3.64942 3.75374 3.77888 3.98932 4.13036 4.20197 4.36291 4.50174 4.63909 4.77676 4.88434 4.92594 4.98731 5.13387 5.21916 5.27701 5.35969 5.39126 5.59465 5.75172 5.87491 5.98126 6.15137 6.19726 6.46719 6.47899 6.64953 6.69819 6.82827 7.00850 7.43078 8.11503 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.005314 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.793191 B = 5267.431839 C = 6824.944705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.203 4.203 3 C -0.032 4.032 4 C -0.152 4.152 5 C 0.005 3.995 6 C -0.231 4.231 7 C -0.024 4.024 8 C -0.214 4.214 9 C 0.306 3.694 10 N -0.535 5.535 11 C 0.132 3.868 12 C -0.467 4.467 13 H 0.067 0.933 14 C 0.048 3.952 15 N -0.786 5.786 16 Si 0.973 3.027 17 H -0.252 1.252 18 H -0.261 1.261 19 H -0.270 1.270 20 C -0.174 4.174 21 C 0.138 3.862 22 N -0.564 5.564 23 C 0.383 3.617 24 N -0.838 5.838 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.156 0.844 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.300 0.700 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.419 0.581 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 -10.433 1.584 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.210 4.210 3 C -0.057 4.057 4 C -0.157 4.157 5 C 0.004 3.996 6 C -0.250 4.250 7 C -0.044 4.044 8 C -0.220 4.220 9 C -0.002 4.002 10 N -0.215 5.215 11 C 0.127 3.873 12 C -0.495 4.495 13 H 0.085 0.915 14 C -0.173 4.173 15 N -0.409 5.409 16 Si 0.794 3.206 17 H -0.176 1.176 18 H -0.185 1.185 19 H -0.194 1.194 20 C -0.194 4.194 21 C -0.018 4.018 22 N -0.282 5.282 23 C 0.144 3.856 24 N -0.385 5.385 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.174 0.826 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.253 0.747 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.847 -9.905 1.372 16.280 hybrid contribution 0.625 0.108 0.017 0.634 sum -12.223 -9.797 1.389 15.726 Atomic orbital electron populations 1.20639 0.87574 1.03949 1.03231 1.20439 0.98854 0.91367 1.10357 1.21613 0.92072 0.98978 0.93061 1.19698 0.94438 0.93445 1.08139 1.18623 0.92395 0.92051 0.96576 1.20517 0.99329 0.90346 1.14819 1.20694 0.90648 0.98445 0.94658 1.17240 0.92377 0.85768 1.26655 1.26047 0.91489 0.92130 0.90562 1.80987 1.10404 1.13618 1.16472 1.18623 0.92919 0.89654 0.86133 1.19831 0.92217 1.03020 1.34411 0.91508 1.26668 1.04990 0.94303 0.91301 1.69723 1.41296 1.09428 1.20449 0.85313 0.76254 0.79328 0.79749 1.17643 1.18478 1.19429 1.21330 0.92146 0.97854 1.08039 1.22530 0.99540 0.86753 0.92983 1.67109 1.07086 1.31940 1.22088 1.18575 0.88050 0.87853 0.91101 1.42144 1.09381 1.04140 1.82801 0.90155 0.90373 0.90187 0.82637 0.84607 0.85409 0.88891 0.86029 0.83737 0.74724 0.76437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.58 71.24 0.68 -0.68 16 2 C -0.20 -4.86 5.91 -19.67 -0.12 -4.97 16 3 C -0.03 -0.90 9.18 22.66 0.21 -0.69 16 4 C -0.15 -5.42 5.89 -19.94 -0.12 -5.54 16 5 C 0.01 0.22 5.86 -20.12 -0.12 0.10 16 6 C -0.23 -8.44 9.38 22.53 0.21 -8.22 16 7 C -0.02 -0.94 9.74 22.47 0.22 -0.72 16 8 C -0.21 -10.00 5.95 -19.54 -0.12 -10.12 16 9 C 0.31 14.82 14.28 88.33 1.26 16.08 16 10 N -0.53 -26.58 18.54 19.00 0.35 -26.23 16 11 C 0.13 6.60 5.73 -19.90 -0.11 6.49 16 12 C -0.47 -23.99 8.58 23.39 0.20 -23.79 16 13 H 0.07 3.55 7.37 -2.91 -0.02 3.53 16 14 C 0.05 2.24 5.16 85.35 0.44 2.68 16 15 N -0.79 -36.96 10.94 21.87 0.24 -36.72 16 16 Si 0.97 36.44 29.60 68.60 2.03 38.47 16 17 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 18 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 19 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 20 C -0.17 -8.13 8.07 22.94 0.19 -7.94 16 21 C 0.14 5.09 10.58 84.95 0.90 5.99 16 22 N -0.56 -18.90 10.38 -192.39 -2.00 -20.89 16 23 C 0.38 10.19 7.73 133.11 1.03 11.22 16 24 N -0.84 -14.57 8.97 -55.41 -0.50 -15.07 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 0.79 6.55 -2.39 -0.02 0.77 16 27 H 0.08 0.99 8.09 -2.38 -0.02 0.97 16 28 H 0.16 3.57 6.24 -2.91 -0.02 3.55 16 29 H 0.14 3.90 6.15 -2.91 -0.02 3.88 16 30 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.30 12.59 8.30 -92.71 -0.77 11.82 16 32 H 0.12 5.78 4.26 -2.91 -0.01 5.77 16 33 H 0.15 5.66 6.16 -2.91 -0.02 5.64 16 34 H 0.42 4.50 6.78 -92.71 -0.63 3.88 16 35 H 0.41 6.46 8.95 -92.71 -0.83 5.63 16 Total: -1.00 -61.16 306.43 4.61 -56.55 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.27 Total: 24.01 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 4.75 Total: -20.11 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -1.90 Total: -98.91 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -61.16 4.61 -56.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.084 kcal (2) G-P(sol) polarization free energy of solvation -61.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds