Wall clock time and date at job start Tue Mar 31 2020 00:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46904 * 2 1 4 4 H 1.08994 * 109.47622 * 305.62978 * 3 2 1 5 5 C 1.50704 * 109.47096 * 185.62846 * 3 2 1 6 6 H 1.08001 * 120.00463 * 244.99215 * 5 3 2 7 7 C 1.37883 * 119.99705 * 64.99424 * 5 3 2 8 8 N 1.31514 * 119.99689 * 187.21792 * 7 5 3 9 9 Si 1.86796 * 119.99991 * 7.22332 * 7 5 3 10 10 H 1.48501 * 109.46948 * 270.00269 * 9 7 5 11 11 H 1.48498 * 109.47337 * 29.99812 * 9 7 5 12 12 H 1.48493 * 109.47257 * 149.99979 * 9 7 5 13 13 N 1.46901 * 109.47340 * 65.63168 * 3 2 1 14 14 C 1.46894 * 111.00142 * 274.99682 * 13 3 2 15 15 H 1.08995 * 115.54848 * 9.42072 * 14 13 3 16 16 C 1.52998 * 117.50207 * 223.74554 * 14 13 3 17 17 C 1.53003 * 117.49816 * 155.08356 * 14 13 3 18 18 H 1.09000 * 117.50127 * 0.02562 * 17 14 13 19 19 C 1.50703 * 117.49575 * 215.00371 * 17 14 13 20 20 C 1.38263 * 119.98894 * 120.00472 * 19 17 14 21 21 C 1.38221 * 120.02703 * 179.97438 * 20 19 17 22 22 C 1.38239 * 120.00995 * 0.02562 * 21 20 19 23 23 C 1.38329 * 119.98798 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01511 * 180.02562 * 23 22 21 25 25 C 1.38190 * 119.99510 * 299.72193 * 19 17 14 26 26 H 1.09002 * 109.46544 * 59.99921 * 1 2 3 27 27 H 1.08995 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47170 * 299.99999 * 1 2 3 29 29 H 1.08997 * 109.47170 * 240.00000 * 2 1 3 30 30 H 1.08995 * 109.46732 * 119.99785 * 2 1 3 31 31 H 0.96996 * 120.00242 * 354.95017 * 8 7 5 32 32 H 1.00897 * 110.99769 * 38.95413 * 13 3 2 33 33 H 1.08995 * 117.49806 * 359.97438 * 16 14 13 34 34 H 1.09000 * 117.50136 * 145.02109 * 16 14 13 35 35 H 1.07998 * 119.98907 * 359.97438 * 20 19 17 36 36 H 1.08000 * 119.99965 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00534 * 180.02562 * 22 21 20 38 38 H 1.07994 * 120.00616 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8352 5 6 3.5406 1.4448 -0.1394 6 1 4.1573 1.8131 0.6671 7 6 4.1261 0.9767 -1.2966 8 7 5.4329 0.8454 -1.3656 9 14 3.0634 0.5294 -2.7662 10 1 2.6750 -0.9013 -2.6789 11 1 1.8424 1.3744 -2.7697 12 1 3.8280 0.7592 -4.0182 13 7 1.6644 2.0947 1.2616 14 6 0.3035 2.6425 1.1863 15 1 -0.2705 2.3559 0.3052 16 6 0.0740 4.0447 1.7537 17 6 -0.4603 2.8197 2.5001 18 1 0.0471 2.5302 3.4204 19 6 -1.9488 2.5848 2.4767 20 6 -2.5061 1.6033 3.2753 21 6 -3.8712 1.3875 3.2548 22 6 -4.6800 2.1527 2.4354 23 6 -4.1228 3.1341 1.6355 24 17 -5.1378 4.0958 0.6067 25 6 -2.7569 3.3543 1.6615 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.9901 1.1460 -0.6308 32 1 1.7554 1.4578 2.0389 33 1 0.9327 4.5606 2.1832 34 1 -0.6513 4.6805 1.2460 35 1 -1.8747 1.0050 3.9153 36 1 -4.3061 0.6205 3.8785 37 1 -5.7466 1.9843 2.4198 38 1 -2.3218 4.1236 1.0410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:01 Heat of formation + Delta-G solvation = 36.404042 kcal Electronic energy + Delta-G solvation = -19276.966261 eV Core-core repulsion = 16338.491109 eV Total energy + Delta-G solvation = -2938.475152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -39.88626 -37.82667 -36.58845 -35.23194 -32.19183 -31.07652 -30.88702 -29.58478 -26.68586 -24.06314 -22.68179 -22.38833 -20.85818 -20.49227 -19.86343 -17.58050 -17.27651 -15.93701 -15.48493 -15.22792 -14.49152 -14.21242 -13.97156 -13.89731 -13.63721 -13.36984 -12.70044 -12.54254 -12.19304 -11.88024 -11.81320 -11.52318 -11.50263 -11.24152 -11.03950 -10.97206 -10.92717 -10.59246 -10.33359 -10.21467 -9.78734 -9.69563 -9.00571 -8.80001 -8.65164 -8.37190 -7.42056 -6.40254 -4.03822 0.99278 1.09010 1.95540 3.34983 3.38358 3.42389 3.56562 4.17927 4.43776 4.47632 4.62388 4.83120 4.90879 4.99686 5.16934 5.20301 5.27076 5.29593 5.52516 5.66105 5.72966 5.77449 5.83725 5.91873 5.97804 6.06090 6.10345 6.20231 6.34934 6.44556 6.47700 6.51695 6.63694 6.72363 6.79781 7.14490 7.75622 8.18839 8.26418 8.46243 9.00277 9.65256 10.99528 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.004186 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.511856 B = 6687.843424 C = 6932.291938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.159 4.159 3 C 0.190 3.810 4 H 0.036 0.964 5 C -0.576 4.576 6 H 0.063 0.937 7 C 0.025 3.975 8 N -0.915 5.915 9 Si 1.052 2.948 10 H -0.284 1.284 11 H -0.280 1.280 12 H -0.289 1.289 13 N -0.639 5.639 14 C 0.051 3.949 15 H 0.100 0.900 16 C -0.167 4.167 17 C -0.148 4.148 18 H 0.115 0.885 19 C -0.023 4.023 20 C -0.113 4.113 21 C -0.104 4.104 22 C -0.124 4.124 23 C -0.029 4.029 24 Cl -0.076 7.076 25 C -0.115 4.115 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.267 0.733 32 H 0.333 0.667 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.513 2.581 8.210 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.198 4.198 3 C 0.081 3.919 4 H 0.053 0.947 5 C -0.615 4.615 6 H 0.081 0.919 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.882 3.118 10 H -0.212 1.212 11 H -0.206 1.206 12 H -0.215 1.215 13 N -0.268 5.268 14 C -0.061 4.061 15 H 0.117 0.883 16 C -0.206 4.206 17 C -0.168 4.168 18 H 0.133 0.867 19 C -0.024 4.024 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.143 4.143 23 C -0.055 4.055 24 Cl -0.047 7.047 25 C -0.134 4.134 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.200 2.626 6.408 21.354 hybrid contribution -0.715 -0.149 1.560 1.722 sum -20.915 2.477 7.967 22.518 Atomic orbital electron populations 1.22092 0.98250 1.00411 1.01097 1.22658 0.93102 1.02157 1.01899 1.19790 0.97205 0.87671 0.87247 0.94667 1.22041 0.89890 1.45753 1.03796 0.91874 1.25681 0.97651 0.94339 1.00201 1.70802 1.04331 1.43694 1.36240 0.83891 0.75138 0.76591 0.76181 1.21158 1.20612 1.21550 1.60519 1.18011 1.41087 1.07197 1.22823 0.91109 0.98220 0.93906 0.88261 1.23350 1.02403 0.91446 1.03367 1.21549 0.90237 1.06448 0.98547 0.86675 1.19213 0.93968 0.94374 0.94853 1.21105 0.94997 0.97654 0.99343 1.21074 0.93480 0.99137 0.98565 1.20994 1.00494 0.95814 0.96956 1.20884 0.91557 0.96331 0.96766 1.98367 1.68544 1.70954 1.66858 1.21010 0.91193 1.00796 1.00359 0.93558 0.93995 0.92687 0.92270 0.92534 0.92241 0.84798 0.87880 0.89045 0.85403 0.85186 0.85247 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 8.59 37.16 0.32 -2.44 16 2 C -0.16 -3.30 5.00 -26.73 -0.13 -3.43 16 3 C 0.19 4.36 1.73 -68.86 -0.12 4.24 16 4 H 0.04 0.86 6.21 -51.93 -0.32 0.53 16 5 C -0.58 -16.02 9.19 -34.44 -0.32 -16.33 16 6 H 0.06 1.92 8.05 -52.49 -0.42 1.50 16 7 C 0.03 0.73 5.42 -17.82 -0.10 0.63 16 8 N -0.92 -28.17 13.70 55.43 0.76 -27.41 16 9 Si 1.05 25.45 25.41 -169.99 -4.32 21.14 16 10 H -0.28 -6.54 6.74 56.52 0.38 -6.16 16 11 H -0.28 -6.34 6.37 56.52 0.36 -5.98 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.64 -12.58 6.44 -100.96 -0.65 -13.23 16 14 C 0.05 0.82 3.69 -67.71 -0.25 0.58 16 15 H 0.10 1.68 6.08 -51.93 -0.32 1.36 16 16 C -0.17 -2.36 9.79 -26.69 -0.26 -2.62 16 17 C -0.15 -1.95 5.84 -91.73 -0.54 -2.49 16 18 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 19 C -0.02 -0.28 5.61 -104.63 -0.59 -0.87 16 20 C -0.11 -1.20 9.74 -39.58 -0.39 -1.59 16 21 C -0.10 -0.99 10.05 -39.59 -0.40 -1.38 16 22 C -0.12 -1.24 9.83 -39.55 -0.39 -1.62 16 23 C -0.03 -0.33 6.32 -39.50 -0.25 -0.58 16 24 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 25 C -0.12 -1.39 9.09 -39.55 -0.36 -1.75 16 26 H 0.05 0.79 7.95 -51.93 -0.41 0.37 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.87 5.75 -51.93 -0.30 0.57 16 29 H 0.06 1.32 4.47 -51.93 -0.23 1.08 16 30 H 0.06 1.15 8.03 -51.93 -0.42 0.74 16 31 H 0.27 8.21 8.72 -40.82 -0.36 7.86 16 32 H 0.33 6.18 8.36 -39.29 -0.33 5.85 16 33 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.09 1.15 6.17 -51.93 -0.32 0.83 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.14 1.59 6.02 -52.49 -0.32 1.27 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -29.50 318.98 -9.80 -39.30 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.14 Total: 7.39 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -3.76 Total: -29.66 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.11 Total: -40.65 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.32 Total: 21.14 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.50 -9.80 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.700 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds