Wall clock time and date at job start Tue Mar 31 2020 00:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46904 * 2 1 4 4 H 1.08994 * 109.47622 * 305.62978 * 3 2 1 5 5 C 1.50704 * 109.47096 * 185.62846 * 3 2 1 6 6 H 1.08001 * 120.00463 * 244.99215 * 5 3 2 7 7 C 1.37883 * 119.99705 * 64.99424 * 5 3 2 8 8 N 1.31514 * 119.99689 * 187.21792 * 7 5 3 9 9 Si 1.86796 * 119.99991 * 7.22332 * 7 5 3 10 10 H 1.48501 * 109.46948 * 270.00269 * 9 7 5 11 11 H 1.48498 * 109.47337 * 29.99812 * 9 7 5 12 12 H 1.48493 * 109.47257 * 149.99979 * 9 7 5 13 13 N 1.46901 * 109.47340 * 65.63168 * 3 2 1 14 14 C 1.46894 * 111.00142 * 274.99682 * 13 3 2 15 15 H 1.08995 * 115.54848 * 9.42072 * 14 13 3 16 16 C 1.52998 * 117.50207 * 223.74554 * 14 13 3 17 17 C 1.53003 * 117.49816 * 155.08356 * 14 13 3 18 18 H 1.09000 * 117.50127 * 0.02562 * 17 14 13 19 19 C 1.50703 * 117.49575 * 215.00371 * 17 14 13 20 20 C 1.38263 * 119.98894 * 120.00472 * 19 17 14 21 21 C 1.38221 * 120.02703 * 179.97438 * 20 19 17 22 22 C 1.38239 * 120.00995 * 0.02562 * 21 20 19 23 23 C 1.38329 * 119.98798 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01511 * 180.02562 * 23 22 21 25 25 C 1.38190 * 119.99510 * 299.72193 * 19 17 14 26 26 H 1.09002 * 109.46544 * 59.99921 * 1 2 3 27 27 H 1.08995 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47170 * 299.99999 * 1 2 3 29 29 H 1.08997 * 109.47170 * 240.00000 * 2 1 3 30 30 H 1.08995 * 109.46732 * 119.99785 * 2 1 3 31 31 H 0.96996 * 120.00242 * 354.95017 * 8 7 5 32 32 H 1.00897 * 110.99769 * 38.95413 * 13 3 2 33 33 H 1.08995 * 117.49806 * 359.97438 * 16 14 13 34 34 H 1.09000 * 117.50136 * 145.02109 * 16 14 13 35 35 H 1.07998 * 119.98907 * 359.97438 * 20 19 17 36 36 H 1.08000 * 119.99965 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00534 * 180.02562 * 22 21 20 38 38 H 1.07994 * 120.00616 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8352 5 6 3.5406 1.4448 -0.1394 6 1 4.1573 1.8131 0.6671 7 6 4.1261 0.9767 -1.2966 8 7 5.4329 0.8454 -1.3656 9 14 3.0634 0.5294 -2.7662 10 1 2.6750 -0.9013 -2.6789 11 1 1.8424 1.3744 -2.7697 12 1 3.8280 0.7592 -4.0182 13 7 1.6644 2.0947 1.2616 14 6 0.3035 2.6425 1.1863 15 1 -0.2705 2.3559 0.3052 16 6 0.0740 4.0447 1.7537 17 6 -0.4603 2.8197 2.5001 18 1 0.0471 2.5302 3.4204 19 6 -1.9488 2.5848 2.4767 20 6 -2.5061 1.6033 3.2753 21 6 -3.8712 1.3875 3.2548 22 6 -4.6800 2.1527 2.4354 23 6 -4.1228 3.1341 1.6355 24 17 -5.1378 4.0958 0.6067 25 6 -2.7569 3.3543 1.6615 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.9901 1.1460 -0.6308 32 1 1.7554 1.4578 2.0389 33 1 0.9327 4.5606 2.1832 34 1 -0.6513 4.6805 1.2460 35 1 -1.8747 1.0050 3.9153 36 1 -4.3061 0.6205 3.8785 37 1 -5.7466 1.9843 2.4198 38 1 -2.3218 4.1236 1.0410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:01 Heat of formation + Delta-G solvation = 19.081528 kcal Electronic energy + Delta-G solvation = -19277.717421 eV Core-core repulsion = 16338.491109 eV Total energy + Delta-G solvation = -2939.226313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.81549 -39.07318 -37.48645 -36.65304 -34.27048 -32.22951 -31.68231 -30.84695 -28.52346 -24.97585 -24.22383 -23.44916 -22.11232 -21.91506 -21.24972 -19.58512 -18.24295 -17.12739 -16.41422 -16.37956 -15.90882 -15.58897 -15.43997 -14.97605 -14.65599 -14.48089 -14.41505 -14.13393 -13.50201 -13.26943 -12.80274 -12.74249 -12.65177 -12.54712 -12.48567 -12.28024 -12.16902 -11.85784 -11.62740 -11.58185 -11.45301 -11.30765 -10.85831 -10.55444 -9.83290 -9.57989 -8.96854 -8.63185 -6.33588 0.17914 0.28205 1.14866 1.40366 1.50852 1.66658 2.46291 2.52199 3.06006 3.10369 3.32093 3.72371 3.83289 3.95191 4.07449 4.22439 4.24047 4.31483 4.35775 4.40630 4.47010 4.49535 4.65287 4.76828 4.84891 4.95904 5.00254 5.08266 5.14035 5.16415 5.23696 5.29832 5.41344 5.49344 5.58267 5.85369 5.87239 6.07903 6.40283 6.69448 6.76036 7.45673 8.69172 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.004186 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.511856 B = 6687.843424 C = 6932.291938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.154 4.154 3 C 0.196 3.804 4 H 0.027 0.973 5 C -0.577 4.577 6 H 0.021 0.979 7 C -0.027 4.027 8 N -0.950 5.950 9 Si 1.089 2.911 10 H -0.262 1.262 11 H -0.255 1.255 12 H -0.292 1.292 13 N -0.653 5.653 14 C 0.029 3.971 15 H 0.096 0.904 16 C -0.167 4.167 17 C -0.117 4.117 18 H 0.122 0.878 19 C -0.041 4.041 20 C -0.115 4.115 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.042 4.042 24 Cl -0.077 7.077 25 C -0.125 4.125 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.251 0.749 32 H 0.336 0.664 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.149 0.851 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.035 1.745 8.792 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C 0.087 3.913 4 H 0.045 0.955 5 C -0.616 4.616 6 H 0.039 0.961 7 C -0.223 4.223 8 N -0.587 5.587 9 Si 0.912 3.088 10 H -0.187 1.187 11 H -0.180 1.180 12 H -0.219 1.219 13 N -0.282 5.282 14 C -0.082 4.082 15 H 0.114 0.886 16 C -0.205 4.205 17 C -0.136 4.136 18 H 0.140 0.860 19 C -0.041 4.041 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.068 4.068 24 Cl -0.048 7.048 25 C -0.144 4.144 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.156 0.844 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.167 0.833 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.749 1.803 7.025 24.831 hybrid contribution 0.347 0.184 1.513 1.564 sum -23.402 1.987 8.539 24.990 Atomic orbital electron populations 1.21986 0.94903 1.02082 1.01851 1.22483 0.96024 0.99765 1.01119 1.19494 0.93720 0.89523 0.88591 0.95512 1.22314 0.92764 1.44213 1.02306 0.96081 1.27082 0.97835 0.94175 1.03238 1.70932 1.05550 1.46306 1.35956 0.83448 0.74507 0.78161 0.72673 1.18748 1.17964 1.21937 1.60312 1.21110 1.40926 1.05851 1.22709 0.89798 0.99807 0.95900 0.88622 1.23395 1.02553 0.91201 1.03366 1.21463 0.90951 1.04247 0.96948 0.85990 1.19158 0.93033 0.95717 0.96237 1.21355 0.95930 0.97098 0.98896 1.21424 0.92892 0.99249 0.98213 1.21325 1.01709 0.94905 0.96051 1.21024 0.91418 0.97008 0.97387 1.98366 1.68392 1.71072 1.66948 1.21041 0.91751 1.01023 1.00576 0.93342 0.91810 0.91473 0.93677 0.92762 0.94011 0.84443 0.88773 0.87577 0.83939 0.82187 0.83288 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 8.59 71.98 0.62 -4.08 16 2 C -0.15 -6.18 5.00 30.59 0.15 -6.03 16 3 C 0.20 8.98 1.73 44.17 0.08 9.06 16 4 H 0.03 1.28 6.21 -2.39 -0.01 1.27 16 5 C -0.58 -33.09 9.19 25.60 0.24 -32.86 16 6 H 0.02 1.34 8.05 -2.91 -0.02 1.32 16 7 C -0.03 -1.57 5.42 84.66 0.46 -1.11 16 8 N -0.95 -60.63 13.70 21.45 0.29 -60.34 16 9 Si 1.09 51.04 25.41 68.60 1.74 52.78 16 10 H -0.26 -11.28 6.74 99.48 0.67 -10.61 16 11 H -0.26 -10.82 6.37 99.48 0.63 -10.18 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 N -0.65 -25.57 6.44 -473.33 -3.05 -28.62 16 14 C 0.03 0.89 3.69 44.92 0.17 1.06 16 15 H 0.10 3.08 6.08 -2.39 -0.01 3.06 16 16 C -0.17 -4.52 9.79 30.62 0.30 -4.22 16 17 C -0.12 -2.84 5.84 -11.51 -0.07 -2.91 16 18 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 19 C -0.04 -0.88 5.61 -19.87 -0.11 -1.00 16 20 C -0.11 -2.04 9.74 22.27 0.22 -1.82 16 21 C -0.10 -1.47 10.05 22.27 0.22 -1.25 16 22 C -0.12 -1.99 9.83 22.29 0.22 -1.77 16 23 C -0.04 -0.84 6.32 22.32 0.14 -0.70 16 24 Cl -0.08 -1.50 28.96 -2.72 -0.08 -1.58 16 25 C -0.13 -2.76 9.09 22.29 0.20 -2.56 16 26 H 0.05 1.49 7.95 -2.39 -0.02 1.47 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.93 5.75 -2.39 -0.01 1.91 16 29 H 0.04 1.92 4.47 -2.39 -0.01 1.91 16 30 H 0.05 2.16 8.03 -2.39 -0.02 2.14 16 31 H 0.25 16.28 8.72 -92.71 -0.81 15.47 16 32 H 0.34 12.39 8.36 -89.70 -0.75 11.64 16 33 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.11 2.53 6.17 -2.39 -0.01 2.52 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.13 2.88 6.02 -2.91 -0.02 2.87 16 Total: -1.00 -65.81 318.98 1.92 -63.89 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.18 Total: 24.06 kcal Atomic # 6 Polarization: -53.02 SS G_CDS: 2.83 Total: -50.19 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.75 Total: -88.96 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 1.74 Total: 52.78 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -65.81 1.92 -63.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.976 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds