Wall clock time and date at job start Tue Mar 31 2020 00:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46866 * 2 1 4 4 H 1.08998 * 109.47582 * 305.00082 * 3 2 1 5 5 C 1.50703 * 109.46988 * 184.99898 * 3 2 1 6 6 H 1.07999 * 120.00188 * 240.00213 * 5 3 2 7 7 C 1.37880 * 119.99700 * 60.00536 * 5 3 2 8 8 N 1.31506 * 120.00204 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99671 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47262 * 89.99677 * 9 7 5 11 11 H 1.48503 * 109.47103 * 209.99598 * 9 7 5 12 12 H 1.48503 * 109.47722 * 329.99681 * 9 7 5 13 13 N 1.46908 * 109.47274 * 65.00236 * 3 2 1 14 14 C 1.46896 * 111.00194 * 274.99884 * 13 3 2 15 15 H 1.09010 * 115.54699 * 9.32371 * 14 13 3 16 16 C 1.52999 * 117.50137 * 223.62023 * 14 13 3 17 17 C 1.52995 * 117.50184 * 154.99279 * 14 13 3 18 18 H 1.08994 * 117.50074 * 214.99934 * 17 14 13 19 19 C 1.50697 * 117.49767 * 0.02562 * 17 14 13 20 20 C 1.38270 * 119.98864 * 239.99694 * 19 17 14 21 21 C 1.38225 * 120.02300 * 180.02562 * 20 19 17 22 22 C 1.38236 * 120.01619 * 359.97438 * 21 20 19 23 23 C 1.38328 * 119.98493 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 120.01214 * 179.97438 * 23 22 21 25 25 C 1.38190 * 119.99947 * 59.99235 * 19 17 14 26 26 H 1.08996 * 109.46989 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47287 * 299.99924 * 1 2 3 28 28 H 1.08996 * 109.47350 * 59.99808 * 1 2 3 29 29 H 1.08998 * 109.46835 * 240.00641 * 2 1 3 30 30 H 1.08996 * 109.47350 * 120.00192 * 2 1 3 31 31 H 0.96996 * 120.00034 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99317 * 38.94997 * 13 3 2 33 33 H 1.08996 * 117.49786 * 145.01453 * 16 14 13 34 34 H 1.09001 * 117.49806 * 0.02562 * 16 14 13 35 35 H 1.07994 * 119.98672 * 0.26976 * 20 19 17 36 36 H 1.07995 * 119.98871 * 180.02562 * 21 20 19 37 37 H 1.07991 * 120.00604 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.00613 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0048 0.8814 -1.3818 10 1 6.5549 -0.3501 -0.7602 11 1 6.3829 0.9225 -2.8173 12 1 6.5569 2.0739 -0.6902 13 7 1.6513 2.0993 1.2553 14 6 0.2913 2.6467 1.1640 15 1 -0.2731 2.3581 0.2771 16 6 0.0552 4.0498 1.7264 17 6 -0.4870 2.8268 2.4688 18 1 -1.5632 2.6568 2.4405 19 6 0.2007 2.4295 3.7496 20 6 -0.3494 1.4484 4.5538 21 6 0.2804 1.0838 5.7289 22 6 1.4610 1.6995 6.1006 23 6 2.0118 2.6810 5.2964 24 17 3.4941 3.4550 5.7627 25 6 1.3809 3.0455 4.1200 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8293 -0.0609 -2.9499 32 1 1.7343 1.4652 2.0358 33 1 -0.6644 4.6847 1.2096 34 1 0.9092 4.5669 2.1639 35 1 -1.2694 0.9641 4.2617 36 1 -0.1495 0.3172 6.3565 37 1 1.9527 1.4148 7.0189 38 1 1.8103 3.8120 3.4919 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154324.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:08 Heat of formation + Delta-G solvation = 37.525211 kcal Electronic energy + Delta-G solvation = -19621.746184 eV Core-core repulsion = 16683.319650 eV Total energy + Delta-G solvation = -2938.426535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.72643 -37.52395 -36.25080 -34.93047 -31.93359 -30.62649 -30.50119 -29.56573 -26.36622 -23.82969 -22.93787 -22.49632 -20.69563 -19.92019 -19.79524 -17.05330 -16.36997 -15.71360 -15.20196 -14.90973 -14.56553 -14.14839 -13.67580 -13.62092 -13.34180 -13.19256 -12.71917 -12.28183 -11.72017 -11.64602 -11.48178 -11.29106 -11.18018 -10.99682 -10.83490 -10.73990 -10.66624 -10.34997 -10.24797 -10.07168 -9.78095 -9.70138 -8.94723 -8.68772 -8.42670 -8.31299 -7.15737 -5.97867 -4.00774 1.24894 1.38226 2.27033 3.33718 3.40155 3.45300 3.63738 4.38278 4.44017 4.69444 4.87448 5.00503 5.14142 5.20448 5.32883 5.40219 5.45386 5.53826 5.73487 5.88881 6.04161 6.09540 6.11592 6.15211 6.20424 6.34926 6.39467 6.43737 6.48924 6.69687 6.82296 6.90961 6.95843 7.21795 7.40736 7.76398 7.89858 8.29122 8.51343 8.61259 9.06672 9.64271 11.08666 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.005840 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.973758 B = 4793.446294 C = 5829.064805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.150 4.150 3 C 0.220 3.780 4 H 0.036 0.964 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.649 5.649 14 C 0.055 3.945 15 H 0.102 0.898 16 C -0.173 4.173 17 C -0.151 4.151 18 H 0.107 0.893 19 C -0.027 4.027 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.030 4.030 24 Cl -0.076 7.076 25 C -0.091 4.091 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.032 0.968 31 H 0.259 0.741 32 H 0.330 0.670 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 2.971 13.352 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 C 0.112 3.888 4 H 0.054 0.946 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.279 5.279 14 C -0.057 4.057 15 H 0.119 0.881 16 C -0.211 4.211 17 C -0.170 4.170 18 H 0.125 0.875 19 C -0.027 4.027 20 C -0.133 4.133 21 C -0.129 4.129 22 C -0.141 4.141 23 C -0.056 4.056 24 Cl -0.047 7.047 25 C -0.109 4.109 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.150 0.850 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.756 3.537 13.043 15.582 hybrid contribution 0.553 -0.900 -0.072 1.059 sum -7.203 2.636 12.971 15.069 Atomic orbital electron populations 1.22035 0.99562 0.99426 1.00030 1.22283 0.91671 1.02235 1.02820 1.19254 0.95412 0.88395 0.85731 0.94596 1.21149 0.91005 1.36031 1.05104 0.91956 1.24919 0.98155 0.95530 0.95786 1.69864 1.34761 1.39336 1.09669 0.86541 0.85739 0.78391 0.76996 1.20876 1.21391 1.19860 1.60581 1.17801 1.41471 1.08004 1.22736 0.91697 0.97629 0.93611 0.88056 1.23313 1.02652 0.91613 1.03561 1.21466 0.98374 1.05999 0.91160 0.87451 1.19011 0.94074 0.95213 0.94440 1.21041 1.00481 0.97234 0.94550 1.20987 0.95098 0.99786 0.97003 1.20968 0.96662 0.96445 1.00017 1.20888 0.89795 0.98046 0.96920 1.98363 1.33995 1.80395 1.91964 1.21079 0.94744 1.00609 0.94493 0.94906 0.93907 0.93778 0.88250 0.94956 0.93084 0.84984 0.89068 0.88251 0.85823 0.85494 0.85468 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.58 37.16 0.32 -2.59 16 2 C -0.15 -3.47 5.24 -26.73 -0.14 -3.61 16 3 C 0.22 5.33 2.16 -68.86 -0.15 5.18 16 4 H 0.04 0.96 7.73 -51.93 -0.40 0.56 16 5 C -0.49 -13.51 8.84 -34.44 -0.30 -13.82 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.31 11.29 55.43 0.63 -24.68 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.65 -13.25 5.79 -100.95 -0.58 -13.83 16 14 C 0.06 0.93 3.99 -67.72 -0.27 0.66 16 15 H 0.10 1.77 6.08 -51.92 -0.32 1.45 16 16 C -0.17 -2.52 9.79 -26.73 -0.26 -2.78 16 17 C -0.15 -2.09 6.02 -91.77 -0.55 -2.65 16 18 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 19 C -0.03 -0.38 4.61 -104.63 -0.48 -0.86 16 20 C -0.11 -1.42 9.74 -39.57 -0.39 -1.80 16 21 C -0.11 -1.26 10.05 -39.59 -0.40 -1.66 16 22 C -0.12 -1.50 9.83 -39.55 -0.39 -1.89 16 23 C -0.03 -0.42 6.32 -39.50 -0.25 -0.67 16 24 Cl -0.08 -1.04 28.96 -51.86 -1.50 -2.54 16 25 C -0.09 -1.35 8.03 -39.55 -0.32 -1.66 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.74 5.75 -51.93 -0.30 0.44 16 28 H 0.04 0.83 7.92 -51.93 -0.41 0.42 16 29 H 0.10 2.60 5.95 -51.93 -0.31 2.30 16 30 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.33 6.75 6.84 -39.29 -0.27 6.48 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.51 6.18 -51.93 -0.32 1.18 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.14 2.22 6.02 -52.48 -0.32 1.91 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -27.64 320.62 -10.47 -38.10 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.14 Total: 8.25 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -3.68 Total: -26.68 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.04 Total: -38.51 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.64 -10.47 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154324.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.630 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds