Wall clock time and date at job start Tue Mar 31 2020 00:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46866 * 2 1 4 4 H 1.08998 * 109.47582 * 305.00082 * 3 2 1 5 5 C 1.50703 * 109.46988 * 184.99898 * 3 2 1 6 6 H 1.07999 * 120.00188 * 240.00213 * 5 3 2 7 7 C 1.37880 * 119.99700 * 60.00536 * 5 3 2 8 8 N 1.31506 * 120.00204 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99671 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47262 * 89.99677 * 9 7 5 11 11 H 1.48503 * 109.47103 * 209.99598 * 9 7 5 12 12 H 1.48503 * 109.47722 * 329.99681 * 9 7 5 13 13 N 1.46908 * 109.47274 * 65.00236 * 3 2 1 14 14 C 1.46896 * 111.00194 * 274.99884 * 13 3 2 15 15 H 1.09010 * 115.54699 * 9.32371 * 14 13 3 16 16 C 1.52999 * 117.50137 * 223.62023 * 14 13 3 17 17 C 1.52995 * 117.50184 * 154.99279 * 14 13 3 18 18 H 1.08994 * 117.50074 * 214.99934 * 17 14 13 19 19 C 1.50697 * 117.49767 * 0.02562 * 17 14 13 20 20 C 1.38270 * 119.98864 * 239.99694 * 19 17 14 21 21 C 1.38225 * 120.02300 * 180.02562 * 20 19 17 22 22 C 1.38236 * 120.01619 * 359.97438 * 21 20 19 23 23 C 1.38328 * 119.98493 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 120.01214 * 179.97438 * 23 22 21 25 25 C 1.38190 * 119.99947 * 59.99235 * 19 17 14 26 26 H 1.08996 * 109.46989 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47287 * 299.99924 * 1 2 3 28 28 H 1.08996 * 109.47350 * 59.99808 * 1 2 3 29 29 H 1.08998 * 109.46835 * 240.00641 * 2 1 3 30 30 H 1.08996 * 109.47350 * 120.00192 * 2 1 3 31 31 H 0.96996 * 120.00034 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99317 * 38.94997 * 13 3 2 33 33 H 1.08996 * 117.49786 * 145.01453 * 16 14 13 34 34 H 1.09001 * 117.49806 * 0.02562 * 16 14 13 35 35 H 1.07994 * 119.98672 * 0.26976 * 20 19 17 36 36 H 1.07995 * 119.98871 * 180.02562 * 21 20 19 37 37 H 1.07991 * 120.00604 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.00613 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0048 0.8814 -1.3818 10 1 6.5549 -0.3501 -0.7602 11 1 6.3829 0.9225 -2.8173 12 1 6.5569 2.0739 -0.6902 13 7 1.6513 2.0993 1.2553 14 6 0.2913 2.6467 1.1640 15 1 -0.2731 2.3581 0.2771 16 6 0.0552 4.0498 1.7264 17 6 -0.4870 2.8268 2.4688 18 1 -1.5632 2.6568 2.4405 19 6 0.2007 2.4295 3.7496 20 6 -0.3494 1.4484 4.5538 21 6 0.2804 1.0838 5.7289 22 6 1.4610 1.6995 6.1006 23 6 2.0118 2.6810 5.2964 24 17 3.4941 3.4550 5.7627 25 6 1.3809 3.0455 4.1200 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8293 -0.0609 -2.9499 32 1 1.7343 1.4652 2.0358 33 1 -0.6644 4.6847 1.2096 34 1 0.9092 4.5669 2.1639 35 1 -1.2694 0.9641 4.2617 36 1 -0.1495 0.3172 6.3565 37 1 1.9527 1.4148 7.0189 38 1 1.8103 3.8120 3.4919 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154324.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:08 Heat of formation + Delta-G solvation = 23.667891 kcal Electronic energy + Delta-G solvation = -19622.347083 eV Core-core repulsion = 16683.319650 eV Total energy + Delta-G solvation = -2939.027433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81557 -38.83088 -37.36655 -36.50667 -33.91057 -31.73282 -31.58960 -31.04246 -28.29612 -24.88635 -24.76534 -23.52437 -21.92766 -21.66969 -21.05500 -18.45034 -18.04695 -16.96702 -16.54772 -16.30993 -16.00178 -15.54195 -15.08610 -14.96565 -14.57697 -14.45612 -14.32006 -13.69251 -13.24950 -13.10945 -12.82668 -12.66208 -12.56562 -12.54106 -12.38728 -12.09906 -12.01257 -11.98933 -11.77268 -11.60944 -11.43552 -11.22345 -10.83899 -10.42996 -9.70697 -9.46735 -8.73159 -8.08181 -6.18227 0.25013 0.38743 1.23555 1.40442 1.41673 1.52238 2.43544 2.60778 3.19005 3.22767 3.47510 3.75861 3.92219 4.10735 4.20802 4.32643 4.41648 4.44185 4.51289 4.59247 4.59342 4.69674 4.76152 4.91819 5.03423 5.04890 5.07515 5.24646 5.27943 5.38516 5.41077 5.47361 5.59983 5.67362 5.74968 5.88864 5.95073 6.34422 6.69488 6.86781 6.97451 7.51079 8.96283 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.005840 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.973758 B = 4793.446294 C = 5829.064805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.142 4.142 3 C 0.228 3.772 4 H 0.004 0.996 5 C -0.515 4.515 6 H 0.048 0.952 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.274 1.274 13 N -0.651 5.651 14 C 0.024 3.976 15 H 0.097 0.903 16 C -0.169 4.169 17 C -0.121 4.121 18 H 0.136 0.864 19 C -0.045 4.045 20 C -0.113 4.113 21 C -0.105 4.105 22 C -0.123 4.123 23 C -0.047 4.047 24 Cl -0.083 7.083 25 C -0.107 4.107 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.148 0.852 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 2.335 14.945 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.120 3.880 4 H 0.022 0.978 5 C -0.553 4.553 6 H 0.066 0.934 7 C -0.185 4.185 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.280 5.280 14 C -0.087 4.087 15 H 0.114 0.886 16 C -0.207 4.207 17 C -0.140 4.140 18 H 0.154 0.846 19 C -0.046 4.046 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.141 4.141 23 C -0.074 4.074 24 Cl -0.054 7.054 25 C -0.126 4.126 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.166 0.834 36 H 0.179 0.821 37 H 0.164 0.836 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.191 2.913 14.646 17.534 hybrid contribution 0.975 -0.681 -0.502 1.291 sum -8.216 2.232 14.144 16.509 Atomic orbital electron populations 1.21884 0.96196 1.00798 1.00855 1.22077 0.94667 1.00737 1.00742 1.18934 0.93634 0.89017 0.86422 0.97800 1.21463 0.92927 1.36028 1.04926 0.93363 1.25605 1.02061 0.95285 0.95577 1.69985 1.36159 1.39744 1.09943 0.85648 0.81106 0.78335 0.77061 1.20280 1.20807 1.19896 1.60413 1.20788 1.40770 1.06048 1.22681 0.90631 0.99765 0.95660 0.88577 1.23359 1.02853 0.91176 1.03279 1.21531 0.99255 1.03851 0.89343 0.84631 1.19128 0.94150 0.96294 0.94988 1.21369 1.01138 0.96273 0.94343 1.21400 0.94294 0.99724 0.96870 1.21294 0.96993 0.95523 1.00307 1.21067 0.89925 0.99026 0.97357 1.98354 1.34474 1.80667 1.91952 1.21021 0.95600 1.01014 0.94932 0.93176 0.91831 0.94178 0.91622 0.95541 0.93074 0.85200 0.86934 0.89360 0.83386 0.82121 0.83579 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 8.58 71.98 0.62 -4.54 16 2 C -0.14 -6.65 5.24 30.59 0.16 -6.49 16 3 C 0.23 11.40 2.16 44.17 0.10 11.50 16 4 H 0.00 0.23 7.73 -2.39 -0.02 0.21 16 5 C -0.51 -28.99 8.84 25.60 0.23 -28.76 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.73 5.29 84.66 0.45 1.18 16 8 N -0.92 -52.98 11.29 21.45 0.24 -52.74 16 9 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.65 -26.96 5.79 -473.31 -2.74 -29.70 16 14 C 0.02 0.79 3.99 44.91 0.18 0.97 16 15 H 0.10 3.30 6.08 -2.38 -0.01 3.29 16 16 C -0.17 -4.73 9.79 30.60 0.30 -4.43 16 17 C -0.12 -3.08 6.02 -11.54 -0.07 -3.15 16 18 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 19 C -0.05 -1.17 4.61 -19.87 -0.09 -1.27 16 20 C -0.11 -2.40 9.74 22.27 0.22 -2.18 16 21 C -0.11 -2.00 10.05 22.27 0.22 -1.78 16 22 C -0.12 -2.71 9.83 22.29 0.22 -2.49 16 23 C -0.05 -1.29 6.32 22.32 0.14 -1.15 16 24 Cl -0.08 -2.27 28.96 -2.72 -0.08 -2.35 16 25 C -0.11 -3.12 8.03 22.29 0.18 -2.94 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.06 2.07 5.75 -2.39 -0.01 2.05 16 28 H 0.04 1.49 7.92 -2.39 -0.02 1.47 16 29 H 0.07 3.52 5.95 -2.39 -0.01 3.51 16 30 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.33 13.50 6.84 -89.69 -0.61 12.89 16 33 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.09 2.69 6.18 -2.39 -0.01 2.68 16 35 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.15 2.61 8.06 -2.92 -0.02 2.59 16 38 H 0.12 3.97 6.02 -2.91 -0.02 3.95 16 Total: -1.00 -61.17 320.62 2.75 -58.42 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.45 Total: 25.00 kcal Atomic # 6 Polarization: -48.39 SS G_CDS: 2.85 Total: -45.54 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -2.50 Total: -82.44 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -0.08 Total: -2.35 kcal Total: -61.17 2.75 -58.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154324.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.085 kcal (2) G-P(sol) polarization free energy of solvation -61.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds