Wall clock time and date at job start Tue Mar 31 2020 00:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47310 * 2 1 4 4 H 1.09001 * 109.47203 * 306.00176 * 3 2 1 5 5 C 1.50701 * 109.47074 * 186.00323 * 3 2 1 6 6 H 1.07996 * 120.00068 * 274.99005 * 5 3 2 7 7 C 1.37878 * 120.00051 * 94.99549 * 5 3 2 8 8 N 1.31512 * 120.00079 * 184.83345 * 7 5 3 9 9 Si 1.86805 * 120.00012 * 4.83871 * 7 5 3 10 10 H 1.48500 * 109.46990 * 84.86218 * 9 7 5 11 11 H 1.48491 * 109.47112 * 204.86546 * 9 7 5 12 12 H 1.48493 * 109.46910 * 324.86710 * 9 7 5 13 13 N 1.46902 * 109.47310 * 66.00128 * 3 2 1 14 14 C 1.46896 * 111.00308 * 275.00255 * 13 3 2 15 15 H 1.09007 * 115.54963 * 350.71953 * 14 13 3 16 16 C 1.52992 * 117.50113 * 136.38581 * 14 13 3 17 17 C 1.53004 * 60.03256 * 107.48185 * 16 14 13 18 18 H 1.08995 * 117.49484 * 107.50171 * 17 16 14 19 19 C 1.50704 * 117.49554 * 252.52479 * 17 16 14 20 20 C 1.38261 * 119.98834 * 188.60662 * 19 17 16 21 21 C 1.38217 * 120.02420 * 180.02562 * 20 19 17 22 22 C 1.38236 * 120.01143 * 359.97204 * 21 20 19 23 23 C 1.38328 * 119.98883 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 120.01312 * 180.02562 * 23 22 21 25 25 C 1.38190 * 119.99332 * 8.32824 * 19 17 16 26 26 H 1.09008 * 109.46709 * 300.00149 * 1 2 3 27 27 H 1.09007 * 109.47193 * 59.99727 * 1 2 3 28 28 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46723 * 240.00076 * 2 1 3 30 30 H 1.08999 * 109.47432 * 120.00201 * 2 1 3 31 31 H 0.96998 * 120.00238 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99576 * 38.95339 * 13 3 2 33 33 H 1.09008 * 117.49936 * 214.97973 * 16 14 13 34 34 H 1.09003 * 117.50297 * 359.97438 * 16 14 13 35 35 H 1.08005 * 119.99163 * 359.97438 * 20 19 17 36 36 H 1.08001 * 119.99560 * 179.97438 * 21 20 19 37 37 H 1.08005 * 120.00259 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00955 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5917 1.9864 -0.8314 5 6 3.5397 1.4450 -0.1486 6 1 4.1688 1.3321 0.7219 7 6 4.1086 1.5915 -1.3959 8 7 5.4127 1.4988 -1.5389 9 14 3.0272 1.9221 -2.8828 10 1 2.7605 3.3792 -2.9868 11 1 3.7191 1.4565 -4.1114 12 1 1.7422 1.1933 -2.7320 13 7 1.6722 2.0920 1.2653 14 6 0.3109 2.6399 1.1995 15 1 -0.1519 2.6321 0.2126 16 6 -0.5998 2.4164 2.4084 17 6 -0.0267 3.8075 2.1300 18 1 -0.7116 4.5681 1.7554 19 6 1.0631 4.3066 3.0435 20 6 1.4936 5.6174 2.9537 21 6 2.4934 6.0759 3.7908 22 6 3.0631 5.2240 4.7186 23 6 2.6327 3.9125 4.8089 24 17 3.3472 2.8424 5.9743 25 6 1.6278 3.4557 3.9745 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8129 1.6015 -2.4165 32 1 1.7679 1.4534 2.0406 33 1 -1.6617 2.2620 2.2169 34 1 -0.1889 1.8624 3.2525 35 1 1.0491 6.2833 2.2288 36 1 2.8296 7.0998 3.7200 37 1 3.8446 5.5823 5.3723 38 1 1.2885 2.4330 4.0472 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:11 Heat of formation + Delta-G solvation = 38.344321 kcal Electronic energy + Delta-G solvation = -19619.449579 eV Core-core repulsion = 16681.058564 eV Total energy + Delta-G solvation = -2938.391015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.63058 -37.68186 -36.22321 -35.01482 -32.09473 -30.56939 -30.49412 -29.78312 -26.87671 -23.79185 -22.74749 -22.38884 -21.14776 -19.95329 -19.84405 -17.14909 -16.66672 -15.76438 -15.21515 -14.84200 -14.55220 -14.14885 -13.70915 -13.57376 -13.52859 -13.25224 -12.76310 -12.46916 -11.91700 -11.80275 -11.71105 -11.60110 -11.29025 -11.04264 -10.92037 -10.81027 -10.72135 -10.59809 -10.44170 -10.03236 -9.86787 -9.73445 -9.15302 -8.56682 -8.51329 -8.30570 -7.26491 -6.04722 -4.01932 1.42123 1.52840 2.34454 3.28109 3.35197 3.36379 3.74529 4.27294 4.41967 4.66839 4.87744 4.96342 5.15639 5.22825 5.25829 5.36336 5.51320 5.58130 5.66478 5.77860 5.83645 5.85808 5.93004 6.01578 6.10738 6.13594 6.23091 6.45215 6.47012 6.51199 6.55966 6.76301 6.79288 6.84529 7.03874 7.14436 7.69369 7.94533 8.29409 8.65971 9.04311 9.57703 11.08893 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.005745 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.301416 B = 4872.788489 C = 5262.936766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.149 4.149 3 C 0.189 3.811 4 H 0.039 0.961 5 C -0.491 4.491 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.635 5.635 14 C 0.059 3.941 15 H 0.107 0.893 16 C -0.210 4.210 17 C -0.128 4.128 18 H 0.109 0.891 19 C -0.003 4.003 20 C -0.113 4.113 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.026 4.026 24 Cl -0.081 7.081 25 C -0.097 4.097 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.263 0.737 32 H 0.331 0.669 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 5.429 10.347 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.081 3.919 4 H 0.057 0.943 5 C -0.530 4.530 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.263 5.263 14 C -0.054 4.054 15 H 0.124 0.876 16 C -0.249 4.249 17 C -0.148 4.148 18 H 0.127 0.873 19 C -0.004 4.004 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.144 4.144 23 C -0.052 4.052 24 Cl -0.053 7.053 25 C -0.115 4.115 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.640 5.914 10.133 15.839 hybrid contribution -0.858 -0.695 -0.791 1.358 sum -11.498 5.219 9.342 15.707 Atomic orbital electron populations 1.22094 0.98482 1.00265 1.01151 1.22497 0.92854 1.01820 1.01679 1.19757 0.96776 0.88226 0.87173 0.94339 1.20831 0.88797 1.48644 0.94694 0.90603 1.24958 0.94734 0.94847 0.98475 1.69890 1.09841 1.50280 1.23707 0.86937 0.81077 0.79061 0.82836 1.20209 1.21601 1.19201 1.60585 1.17827 1.40832 1.07031 1.22722 0.90762 0.98223 0.93644 0.87551 1.23620 0.99810 0.99221 1.02208 1.21463 0.98935 0.91963 1.02410 0.87281 1.18835 0.95410 0.92752 0.93369 1.20960 0.97662 0.95470 0.99026 1.20967 0.96484 0.99519 0.95444 1.20906 1.01025 0.92024 1.00398 1.20805 0.97848 0.91548 0.95022 1.98351 1.83203 1.65538 1.58178 1.20758 0.95748 1.00067 0.94944 0.92485 0.93789 0.94189 0.92244 0.92874 0.92698 0.84914 0.88881 0.88602 0.85931 0.85593 0.85598 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 8.88 37.16 0.33 -2.31 16 2 C -0.15 -2.97 5.39 -26.73 -0.14 -3.11 16 3 C 0.19 4.22 1.83 -68.86 -0.13 4.10 16 4 H 0.04 0.89 4.73 -51.93 -0.25 0.65 16 5 C -0.49 -13.55 9.19 -34.44 -0.32 -13.87 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 9 Si 0.87 21.32 26.99 -169.99 -4.59 16.73 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.15 6.82 56.52 0.39 -5.77 16 13 N -0.63 -12.30 5.34 -100.92 -0.54 -12.84 16 14 C 0.06 0.93 4.06 -67.68 -0.27 0.65 16 15 H 0.11 1.69 7.10 -51.92 -0.37 1.32 16 16 C -0.21 -2.65 8.50 -26.73 -0.23 -2.87 16 17 C -0.13 -1.76 6.05 -91.73 -0.55 -2.32 16 18 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.00 -0.05 5.25 -104.63 -0.55 -0.60 16 20 C -0.11 -1.57 9.74 -39.58 -0.39 -1.95 16 21 C -0.11 -1.38 10.05 -39.59 -0.40 -1.78 16 22 C -0.12 -1.71 9.83 -39.55 -0.39 -2.10 16 23 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 24 Cl -0.08 -1.14 28.96 -51.86 -1.50 -2.64 16 25 C -0.10 -1.45 8.22 -39.55 -0.33 -1.78 16 26 H 0.06 0.84 5.01 -51.92 -0.26 0.58 16 27 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.05 1.04 8.02 -51.93 -0.42 0.62 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.33 6.16 7.54 -39.29 -0.30 5.87 16 33 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.10 1.20 6.12 -51.93 -0.32 0.88 16 35 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.13 1.83 5.65 -52.49 -0.30 1.53 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -29.76 320.46 -9.89 -39.65 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.16 Total: 7.55 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -3.71 Total: -26.63 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.23 Total: -39.49 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.59 Total: 16.73 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.76 -9.89 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.998 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds