Wall clock time and date at job start Tue Mar 31 2020 00:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47310 * 2 1 4 4 H 1.09001 * 109.47203 * 306.00176 * 3 2 1 5 5 C 1.50701 * 109.47074 * 186.00323 * 3 2 1 6 6 H 1.07996 * 120.00068 * 274.99005 * 5 3 2 7 7 C 1.37878 * 120.00051 * 94.99549 * 5 3 2 8 8 N 1.31512 * 120.00079 * 184.83345 * 7 5 3 9 9 Si 1.86805 * 120.00012 * 4.83871 * 7 5 3 10 10 H 1.48500 * 109.46990 * 84.86218 * 9 7 5 11 11 H 1.48491 * 109.47112 * 204.86546 * 9 7 5 12 12 H 1.48493 * 109.46910 * 324.86710 * 9 7 5 13 13 N 1.46902 * 109.47310 * 66.00128 * 3 2 1 14 14 C 1.46896 * 111.00308 * 275.00255 * 13 3 2 15 15 H 1.09007 * 115.54963 * 350.71953 * 14 13 3 16 16 C 1.52992 * 117.50113 * 136.38581 * 14 13 3 17 17 C 1.53004 * 60.03256 * 107.48185 * 16 14 13 18 18 H 1.08995 * 117.49484 * 107.50171 * 17 16 14 19 19 C 1.50704 * 117.49554 * 252.52479 * 17 16 14 20 20 C 1.38261 * 119.98834 * 188.60662 * 19 17 16 21 21 C 1.38217 * 120.02420 * 180.02562 * 20 19 17 22 22 C 1.38236 * 120.01143 * 359.97204 * 21 20 19 23 23 C 1.38328 * 119.98883 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 120.01312 * 180.02562 * 23 22 21 25 25 C 1.38190 * 119.99332 * 8.32824 * 19 17 16 26 26 H 1.09008 * 109.46709 * 300.00149 * 1 2 3 27 27 H 1.09007 * 109.47193 * 59.99727 * 1 2 3 28 28 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46723 * 240.00076 * 2 1 3 30 30 H 1.08999 * 109.47432 * 120.00201 * 2 1 3 31 31 H 0.96998 * 120.00238 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99576 * 38.95339 * 13 3 2 33 33 H 1.09008 * 117.49936 * 214.97973 * 16 14 13 34 34 H 1.09003 * 117.50297 * 359.97438 * 16 14 13 35 35 H 1.08005 * 119.99163 * 359.97438 * 20 19 17 36 36 H 1.08001 * 119.99560 * 179.97438 * 21 20 19 37 37 H 1.08005 * 120.00259 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00955 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5917 1.9864 -0.8314 5 6 3.5397 1.4450 -0.1486 6 1 4.1688 1.3321 0.7219 7 6 4.1086 1.5915 -1.3959 8 7 5.4127 1.4988 -1.5389 9 14 3.0272 1.9221 -2.8828 10 1 2.7605 3.3792 -2.9868 11 1 3.7191 1.4565 -4.1114 12 1 1.7422 1.1933 -2.7320 13 7 1.6722 2.0920 1.2653 14 6 0.3109 2.6399 1.1995 15 1 -0.1519 2.6321 0.2126 16 6 -0.5998 2.4164 2.4084 17 6 -0.0267 3.8075 2.1300 18 1 -0.7116 4.5681 1.7554 19 6 1.0631 4.3066 3.0435 20 6 1.4936 5.6174 2.9537 21 6 2.4934 6.0759 3.7908 22 6 3.0631 5.2240 4.7186 23 6 2.6327 3.9125 4.8089 24 17 3.3472 2.8424 5.9743 25 6 1.6278 3.4557 3.9745 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8129 1.6015 -2.4165 32 1 1.7679 1.4534 2.0406 33 1 -1.6617 2.2620 2.2169 34 1 -0.1889 1.8624 3.2525 35 1 1.0491 6.2833 2.2288 36 1 2.8296 7.0998 3.7200 37 1 3.8446 5.5823 5.3723 38 1 1.2885 2.4330 4.0472 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:10 Heat of formation + Delta-G solvation = 21.571111 kcal Electronic energy + Delta-G solvation = -19620.176920 eV Core-core repulsion = 16681.058564 eV Total energy + Delta-G solvation = -2939.118356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73849 -38.95182 -37.37965 -36.45369 -34.16216 -31.80348 -31.56196 -31.09440 -28.71588 -24.91847 -24.36182 -23.51537 -22.29199 -21.60767 -21.00892 -19.00162 -17.97439 -17.02868 -16.50643 -16.18599 -15.99075 -15.61631 -15.07467 -14.89954 -14.72029 -14.56981 -14.34467 -13.87547 -13.51574 -13.32346 -12.82577 -12.75530 -12.68590 -12.46863 -12.31559 -12.17422 -12.06469 -11.84913 -11.75152 -11.68436 -11.47234 -11.16642 -11.03764 -10.64435 -9.65589 -9.44892 -8.67381 -8.23998 -6.25253 0.33071 0.45389 1.23695 1.34494 1.35795 1.45357 2.36397 2.65885 3.05579 3.18564 3.49563 3.80302 3.92905 4.10430 4.18255 4.26858 4.32358 4.41933 4.46442 4.49233 4.54694 4.59046 4.77736 4.81198 4.92065 4.97975 5.08167 5.18867 5.20571 5.24390 5.30226 5.39749 5.51282 5.53793 5.71495 5.73417 5.99655 6.12756 6.72789 6.77941 6.81275 7.38484 8.93845 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.005745 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.301416 B = 4872.788489 C = 5262.936766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.145 4.145 3 C 0.196 3.804 4 H 0.037 0.963 5 C -0.493 4.493 6 H 0.025 0.975 7 C 0.008 3.992 8 N -0.953 5.953 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.241 1.241 13 N -0.648 5.648 14 C 0.033 3.967 15 H 0.111 0.889 16 C -0.183 4.183 17 C -0.123 4.123 18 H 0.132 0.868 19 C -0.021 4.021 20 C -0.123 4.123 21 C -0.108 4.108 22 C -0.134 4.134 23 C -0.045 4.045 24 Cl -0.083 7.083 25 C -0.110 4.110 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.263 0.737 32 H 0.332 0.668 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 6.323 10.101 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.185 4.185 3 C 0.087 3.913 4 H 0.055 0.945 5 C -0.532 4.532 6 H 0.044 0.956 7 C -0.188 4.188 8 N -0.595 5.595 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.165 1.165 13 N -0.277 5.277 14 C -0.079 4.079 15 H 0.128 0.872 16 C -0.221 4.221 17 C -0.142 4.142 18 H 0.150 0.850 19 C -0.022 4.022 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.153 4.153 23 C -0.071 4.071 24 Cl -0.054 7.054 25 C -0.129 4.129 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.160 0.840 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.808 6.809 9.914 18.311 hybrid contribution 0.178 -0.950 -0.560 1.117 sum -13.630 5.859 9.353 17.538 Atomic orbital electron populations 1.21986 0.94816 1.01915 1.02210 1.22333 0.96057 0.99582 1.00557 1.19500 0.93105 0.89950 0.88697 0.94471 1.21160 0.91658 1.47391 0.92956 0.95623 1.25855 0.96010 0.94962 1.02002 1.70066 1.12158 1.52747 1.24490 0.85838 0.80012 0.79262 0.78338 1.19606 1.21698 1.16474 1.60304 1.21277 1.40617 1.05461 1.22700 0.89549 1.00476 0.95158 0.87169 1.23661 1.00571 0.98026 0.99870 1.21587 0.98785 0.92730 1.01128 0.84994 1.19105 0.96068 0.93306 0.93692 1.21314 0.97818 0.95556 0.99454 1.21347 0.95878 1.00747 0.94602 1.21215 1.01401 0.91773 1.00880 1.21043 0.98364 0.92237 0.95480 1.98342 1.83220 1.65665 1.58182 1.20876 0.96226 1.00298 0.95508 0.90816 0.93323 0.92271 0.94195 0.93358 0.92806 0.84918 0.86042 0.88638 0.84035 0.82817 0.84080 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 8.88 71.98 0.64 -3.80 16 2 C -0.15 -5.66 5.39 30.59 0.16 -5.49 16 3 C 0.20 8.70 1.83 44.17 0.08 8.78 16 4 H 0.04 1.66 4.73 -2.39 -0.01 1.65 16 5 C -0.49 -28.13 9.19 25.60 0.24 -27.89 16 6 H 0.03 1.67 8.06 -2.91 -0.02 1.64 16 7 C 0.01 0.47 5.47 84.66 0.46 0.93 16 8 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 9 Si 0.94 44.15 26.99 68.60 1.85 46.00 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.24 -10.20 6.82 99.48 0.68 -9.52 16 13 N -0.65 -24.68 5.34 -473.19 -2.53 -27.21 16 14 C 0.03 0.94 4.06 44.94 0.18 1.12 16 15 H 0.11 3.12 7.10 -2.38 -0.02 3.10 16 16 C -0.18 -3.96 8.50 30.59 0.26 -3.70 16 17 C -0.12 -3.02 6.05 -11.51 -0.07 -3.09 16 18 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 19 C -0.02 -0.59 5.25 -19.87 -0.10 -0.70 16 20 C -0.12 -3.18 9.74 22.27 0.22 -2.96 16 21 C -0.11 -2.61 10.05 22.26 0.22 -2.39 16 22 C -0.13 -3.55 9.83 22.29 0.22 -3.33 16 23 C -0.04 -1.32 6.32 22.32 0.14 -1.18 16 24 Cl -0.08 -2.33 28.96 -2.72 -0.08 -2.41 16 25 C -0.11 -3.26 8.22 22.29 0.18 -3.08 16 26 H 0.07 1.89 5.01 -2.38 -0.01 1.88 16 27 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.88 8.02 -2.39 -0.02 1.86 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.33 12.31 7.54 -89.69 -0.68 11.63 16 33 H 0.12 2.00 8.14 -2.38 -0.02 1.99 16 34 H 0.10 2.12 6.12 -2.39 -0.01 2.10 16 35 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 37 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.13 3.59 5.65 -2.91 -0.02 3.58 16 Total: -1.00 -67.12 320.46 2.74 -64.38 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.36 Total: 26.26 kcal Atomic # 6 Polarization: -49.60 SS G_CDS: 2.84 Total: -46.77 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -2.23 Total: -87.46 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.85 Total: 46.00 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.41 kcal Total: -67.12 2.74 -64.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.947 kcal (2) G-P(sol) polarization free energy of solvation -67.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds