Wall clock time and date at job start Tue Mar 31 2020 00:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46925 * 2 1 4 4 H 1.09000 * 109.47278 * 178.34804 * 3 2 1 5 5 C 1.50702 * 109.46722 * 58.34977 * 3 2 1 6 6 H 1.08003 * 119.99893 * 244.60313 * 5 3 2 7 7 C 1.37880 * 120.00131 * 64.60982 * 5 3 2 8 8 N 1.31513 * 120.00099 * 8.97072 * 7 5 3 9 9 Si 1.86802 * 120.00017 * 188.70139 * 7 5 3 10 10 H 1.48498 * 109.46761 * 89.99394 * 9 7 5 11 11 H 1.48497 * 109.46940 * 209.99708 * 9 7 5 12 12 H 1.48500 * 109.46916 * 329.99714 * 9 7 5 13 13 N 1.46900 * 109.47420 * 298.35014 * 3 2 1 14 14 C 1.46896 * 110.99853 * 273.14260 * 13 3 2 15 15 C 1.50704 * 115.55034 * 297.18931 * 14 13 3 16 16 C 1.38236 * 120.00930 * 141.37379 * 15 14 13 17 17 C 1.38218 * 120.01649 * 179.77076 * 16 15 14 18 18 C 1.38266 * 120.02230 * 0.50392 * 17 16 15 19 19 C 1.38197 * 120.01420 * 359.75158 * 18 17 16 20 20 C 1.38330 * 120.00722 * 321.65288 * 15 14 13 21 21 Cl 1.73604 * 120.01339 * 359.95276 * 20 15 14 22 22 C 1.53000 * 117.49983 * 151.52144 * 14 13 3 23 23 C 1.53003 * 117.50013 * 82.85986 * 14 13 3 24 24 H 1.09005 * 109.46649 * 185.14403 * 1 2 3 25 25 H 1.08994 * 109.47040 * 305.14370 * 1 2 3 26 26 H 1.09001 * 109.47467 * 65.14452 * 1 2 3 27 27 H 1.09000 * 109.47259 * 240.00645 * 2 1 3 28 28 H 1.08990 * 109.47426 * 120.00446 * 2 1 3 29 29 H 0.97008 * 119.99398 * 1.49387 * 8 7 5 30 30 H 1.00899 * 111.00186 * 37.09415 * 13 3 2 31 31 H 1.08002 * 119.98541 * 0.02562 * 16 15 14 32 32 H 1.07999 * 119.98616 * 180.23600 * 17 16 15 33 33 H 1.07998 * 119.99176 * 179.76724 * 18 17 16 34 34 H 1.07996 * 120.00492 * 180.02562 * 19 18 17 35 35 H 1.09004 * 117.49669 * 359.97438 * 22 14 13 36 36 H 1.08995 * 117.49905 * 145.01578 * 22 14 13 37 37 H 1.09000 * 117.49596 * 214.97612 * 23 14 13 38 38 H 1.08994 * 117.49628 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 0.0296 5 6 1.5044 2.1646 1.2095 6 1 0.8266 2.9962 1.0858 7 6 1.8799 1.7635 2.4742 8 7 2.8355 0.8726 2.6249 9 14 1.0365 2.4912 3.9737 10 1 -0.1422 1.6612 4.3301 11 1 1.9878 2.5155 5.1136 12 1 0.5932 3.8754 3.6692 13 7 1.5832 2.1235 -1.2189 14 6 2.5208 1.9029 -2.3279 15 6 3.9096 2.4513 -2.1237 16 6 5.0071 1.7368 -2.5662 17 6 6.2806 2.2418 -2.3833 18 6 6.4582 3.4571 -1.7483 19 6 5.3622 4.1699 -1.3007 20 6 4.0868 3.6672 -1.4883 21 17 2.7094 4.5624 -0.9268 22 6 1.9532 1.9281 -3.7485 23 6 2.3848 0.6008 -3.1197 24 1 -0.3633 -1.0236 0.0921 25 1 -0.3633 0.5915 0.8403 26 1 -0.3634 0.4320 -0.9325 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8898 29 1 3.2910 0.5137 1.8472 30 1 0.6511 1.8295 -1.4696 31 1 4.8690 0.7855 -3.0587 32 1 7.1375 1.6849 -2.7326 33 1 7.4538 3.8495 -1.6022 34 1 5.5011 5.1194 -0.8051 35 1 0.8839 2.1078 -3.8601 36 1 2.5844 2.3409 -4.5354 37 1 3.2998 0.1411 -3.4933 38 1 1.5994 -0.0920 -2.8179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:08 Heat of formation + Delta-G solvation = 47.275249 kcal Electronic energy + Delta-G solvation = -20474.029748 eV Core-core repulsion = 17536.026007 eV Total energy + Delta-G solvation = -2938.003741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = -0.59 seconds Orbital eigenvalues (eV) -39.66741 -37.45369 -35.51674 -35.05408 -31.59630 -30.44507 -30.36479 -29.51221 -25.46651 -23.58672 -23.17919 -22.56414 -21.65364 -19.96608 -19.16248 -16.88644 -16.51010 -15.65846 -15.09081 -14.56978 -14.49365 -13.72169 -13.55286 -13.37191 -13.17451 -12.94124 -12.90361 -12.38889 -11.87082 -11.44579 -11.16278 -11.10095 -10.94104 -10.80324 -10.71342 -10.61302 -10.34391 -10.11364 -10.02645 -9.95275 -9.77643 -9.72820 -8.61335 -8.44009 -8.12499 -8.04209 -7.11844 -6.19437 -3.85212 1.52044 1.55601 2.98284 3.49520 3.53114 3.68568 3.84435 4.25218 4.60838 4.74405 4.95286 5.04843 5.17725 5.23830 5.42596 5.50349 5.59436 5.67991 5.84919 5.89682 6.02833 6.10057 6.15000 6.21082 6.24338 6.34860 6.36702 6.55171 6.65924 6.69000 6.74881 7.06922 7.08804 7.14394 7.32534 7.34873 8.01004 8.36761 8.50249 8.77624 9.04323 9.80941 11.17045 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.008032 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.193446 B = 3485.179846 C = 4129.268131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.153 4.153 3 C 0.213 3.787 4 H 0.026 0.974 5 C -0.556 4.556 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 1.062 2.938 10 H -0.291 1.291 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.624 5.624 14 C 0.105 3.895 15 C -0.027 4.027 16 C -0.111 4.111 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.123 4.123 20 C 0.001 3.999 21 Cl -0.023 7.023 22 C -0.167 4.167 23 C -0.221 4.221 24 H 0.026 0.974 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.268 0.732 30 H 0.331 0.669 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 2.665 -11.582 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.193 4.193 3 C 0.106 3.894 4 H 0.044 0.956 5 C -0.595 4.595 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.892 3.108 10 H -0.218 1.218 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.253 5.253 14 C 0.012 3.988 15 C -0.028 4.028 16 C -0.130 4.130 17 C -0.146 4.146 18 C -0.133 4.133 19 C -0.141 4.141 20 C -0.026 4.026 21 Cl 0.007 6.993 22 C -0.205 4.205 23 C -0.261 4.261 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.327 3.342 -9.646 10.737 hybrid contribution -0.206 -1.022 -1.821 2.098 sum 3.121 2.321 -11.467 12.109 Atomic orbital electron populations 1.21596 0.97095 0.99067 1.01141 1.22275 0.95712 1.01650 0.99677 1.19248 0.95254 0.87759 0.87172 0.95585 1.21747 1.30091 1.17122 0.90544 0.92725 1.25562 0.96194 0.96296 1.00473 1.70765 1.21414 1.29391 1.33996 0.83638 0.75738 0.75586 0.75865 1.21806 1.21439 1.21591 1.60773 1.02442 1.60552 1.01540 1.20143 0.91485 0.96937 0.90243 1.18759 0.93095 0.92961 0.97983 1.20988 0.91786 0.99548 1.00654 1.21034 0.96779 0.96355 1.00393 1.21007 0.98225 0.95259 0.98841 1.21071 0.90955 1.00937 1.01182 1.20811 0.89704 0.93899 0.98219 1.98410 1.41050 1.72957 1.86916 1.23121 1.01262 1.00695 0.95430 1.23760 1.03289 0.92049 1.07006 0.95449 0.90965 0.95016 0.95687 0.91605 0.92120 0.84956 0.85692 0.86051 0.85815 0.85413 0.88691 0.88993 0.89197 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.38 37.16 0.35 -2.32 16 2 C -0.15 -3.43 5.43 -26.73 -0.15 -3.57 16 3 C 0.21 5.02 1.61 -68.86 -0.11 4.91 16 4 H 0.03 0.71 6.23 -51.93 -0.32 0.38 16 5 C -0.56 -14.69 7.24 -34.44 -0.25 -14.94 16 6 H 0.05 1.50 7.83 -52.48 -0.41 1.09 16 7 C 0.02 0.50 5.22 -17.82 -0.09 0.41 16 8 N -0.92 -27.07 12.95 55.43 0.72 -26.36 16 9 Si 1.06 25.40 29.91 -169.99 -5.08 20.32 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.62 -12.61 3.99 -95.41 -0.38 -12.99 16 14 C 0.11 1.85 1.84 -132.75 -0.24 1.61 16 15 C -0.03 -0.48 4.30 -104.59 -0.45 -0.93 16 16 C -0.11 -1.74 9.39 -39.59 -0.37 -2.11 16 17 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 18 C -0.11 -1.62 10.05 -39.59 -0.40 -2.01 16 19 C -0.12 -1.99 9.83 -39.55 -0.39 -2.38 16 20 C 0.00 0.02 6.22 -39.50 -0.25 -0.23 16 21 Cl -0.02 -0.45 25.84 -51.86 -1.34 -1.79 16 22 C -0.17 -2.44 10.01 -26.69 -0.27 -2.71 16 23 C -0.22 -3.37 8.71 -26.69 -0.23 -3.61 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.62 6.98 -51.93 -0.36 1.25 16 26 H 0.03 0.57 6.52 -51.93 -0.34 0.23 16 27 H 0.02 0.51 5.96 -51.93 -0.31 0.20 16 28 H 0.07 1.67 6.39 -51.93 -0.33 1.33 16 29 H 0.27 7.93 6.09 -40.82 -0.25 7.68 16 30 H 0.33 6.46 6.30 -39.29 -0.25 6.21 16 31 H 0.13 1.73 5.95 -52.49 -0.31 1.41 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.25 6.10 -51.93 -0.32 0.93 16 38 H 0.10 1.50 7.07 -51.93 -0.37 1.13 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -28.95 313.30 -9.51 -38.46 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.90 Total: 7.68 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -3.24 Total: -30.05 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.34 Total: -39.34 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.34 Total: -1.79 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.95 -9.51 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.737 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.59 seconds