Wall clock time and date at job start Tue Mar 31 2020 00:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46925 * 2 1 4 4 H 1.09000 * 109.47278 * 178.34804 * 3 2 1 5 5 C 1.50702 * 109.46722 * 58.34977 * 3 2 1 6 6 H 1.08003 * 119.99893 * 244.60313 * 5 3 2 7 7 C 1.37880 * 120.00131 * 64.60982 * 5 3 2 8 8 N 1.31513 * 120.00099 * 8.97072 * 7 5 3 9 9 Si 1.86802 * 120.00017 * 188.70139 * 7 5 3 10 10 H 1.48498 * 109.46761 * 89.99394 * 9 7 5 11 11 H 1.48497 * 109.46940 * 209.99708 * 9 7 5 12 12 H 1.48500 * 109.46916 * 329.99714 * 9 7 5 13 13 N 1.46900 * 109.47420 * 298.35014 * 3 2 1 14 14 C 1.46896 * 110.99853 * 273.14260 * 13 3 2 15 15 C 1.50704 * 115.55034 * 297.18931 * 14 13 3 16 16 C 1.38236 * 120.00930 * 141.37379 * 15 14 13 17 17 C 1.38218 * 120.01649 * 179.77076 * 16 15 14 18 18 C 1.38266 * 120.02230 * 0.50392 * 17 16 15 19 19 C 1.38197 * 120.01420 * 359.75158 * 18 17 16 20 20 C 1.38330 * 120.00722 * 321.65288 * 15 14 13 21 21 Cl 1.73604 * 120.01339 * 359.95276 * 20 15 14 22 22 C 1.53000 * 117.49983 * 151.52144 * 14 13 3 23 23 C 1.53003 * 117.50013 * 82.85986 * 14 13 3 24 24 H 1.09005 * 109.46649 * 185.14403 * 1 2 3 25 25 H 1.08994 * 109.47040 * 305.14370 * 1 2 3 26 26 H 1.09001 * 109.47467 * 65.14452 * 1 2 3 27 27 H 1.09000 * 109.47259 * 240.00645 * 2 1 3 28 28 H 1.08990 * 109.47426 * 120.00446 * 2 1 3 29 29 H 0.97008 * 119.99398 * 1.49387 * 8 7 5 30 30 H 1.00899 * 111.00186 * 37.09415 * 13 3 2 31 31 H 1.08002 * 119.98541 * 0.02562 * 16 15 14 32 32 H 1.07999 * 119.98616 * 180.23600 * 17 16 15 33 33 H 1.07998 * 119.99176 * 179.76724 * 18 17 16 34 34 H 1.07996 * 120.00492 * 180.02562 * 19 18 17 35 35 H 1.09004 * 117.49669 * 359.97438 * 22 14 13 36 36 H 1.08995 * 117.49905 * 145.01578 * 22 14 13 37 37 H 1.09000 * 117.49596 * 214.97612 * 23 14 13 38 38 H 1.08994 * 117.49628 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 0.0296 5 6 1.5044 2.1646 1.2095 6 1 0.8266 2.9962 1.0858 7 6 1.8799 1.7635 2.4742 8 7 2.8355 0.8726 2.6249 9 14 1.0365 2.4912 3.9737 10 1 -0.1422 1.6612 4.3301 11 1 1.9878 2.5155 5.1136 12 1 0.5932 3.8754 3.6692 13 7 1.5832 2.1235 -1.2189 14 6 2.5208 1.9029 -2.3279 15 6 3.9096 2.4513 -2.1237 16 6 5.0071 1.7368 -2.5662 17 6 6.2806 2.2418 -2.3833 18 6 6.4582 3.4571 -1.7483 19 6 5.3622 4.1699 -1.3007 20 6 4.0868 3.6672 -1.4883 21 17 2.7094 4.5624 -0.9268 22 6 1.9532 1.9281 -3.7485 23 6 2.3848 0.6008 -3.1197 24 1 -0.3633 -1.0236 0.0921 25 1 -0.3633 0.5915 0.8403 26 1 -0.3634 0.4320 -0.9325 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8898 29 1 3.2910 0.5137 1.8472 30 1 0.6511 1.8295 -1.4696 31 1 4.8690 0.7855 -3.0587 32 1 7.1375 1.6849 -2.7326 33 1 7.4538 3.8495 -1.6022 34 1 5.5011 5.1194 -0.8051 35 1 0.8839 2.1078 -3.8601 36 1 2.5844 2.3409 -4.5354 37 1 3.2998 0.1411 -3.4933 38 1 1.5994 -0.0920 -2.8179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:07 Heat of formation + Delta-G solvation = 32.539488 kcal Electronic energy + Delta-G solvation = -20474.668738 eV Core-core repulsion = 17536.026007 eV Total energy + Delta-G solvation = -2938.642732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.94403 -38.83380 -36.94574 -36.70514 -33.55959 -31.72882 -31.58729 -31.02706 -27.39321 -25.44822 -24.43208 -23.78399 -22.86255 -21.69233 -20.58291 -18.64208 -17.97514 -17.06716 -16.38090 -15.94403 -15.69648 -15.61892 -15.25140 -14.87832 -14.61249 -14.48267 -14.21347 -14.03121 -13.33019 -13.04690 -12.71349 -12.58507 -12.36919 -12.27850 -12.13731 -12.03484 -11.95829 -11.93334 -11.71779 -11.56743 -11.40695 -11.16627 -10.48876 -10.21306 -9.74684 -9.33225 -8.68528 -8.37898 -6.02991 0.31777 0.35003 1.54252 1.61538 1.63014 1.78023 2.63006 2.65420 2.99030 3.37305 3.47210 3.65593 3.82073 4.03281 4.14510 4.21298 4.41630 4.42600 4.46126 4.51092 4.62670 4.65842 4.72542 4.81889 4.95733 5.00895 5.06703 5.19843 5.26313 5.29107 5.37737 5.48830 5.50123 5.53556 5.61280 5.95027 6.15096 6.35666 6.71562 6.86905 6.95062 7.69217 8.97929 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.008032 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.193446 B = 3485.179846 C = 4129.268131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.146 4.146 3 C 0.230 3.770 4 H -0.010 1.010 5 C -0.545 4.545 6 H 0.040 0.960 7 C -0.030 4.030 8 N -0.945 5.945 9 Si 1.099 2.901 10 H -0.278 1.278 11 H -0.293 1.293 12 H -0.279 1.279 13 N -0.628 5.628 14 C 0.075 3.925 15 C -0.048 4.048 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.137 4.137 20 C -0.031 4.031 21 Cl -0.050 7.050 22 C -0.146 4.146 23 C -0.210 4.210 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.255 0.745 30 H 0.332 0.668 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 2.236 -13.245 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.186 4.186 3 C 0.121 3.879 4 H 0.008 0.992 5 C -0.584 4.584 6 H 0.059 0.941 7 C -0.227 4.227 8 N -0.585 5.585 9 Si 0.924 3.076 10 H -0.204 1.204 11 H -0.219 1.219 12 H -0.204 1.204 13 N -0.256 5.256 14 C -0.018 4.018 15 C -0.049 4.049 16 C -0.139 4.139 17 C -0.139 4.139 18 C -0.131 4.131 19 C -0.156 4.156 20 C -0.058 4.058 21 Cl -0.021 7.021 22 C -0.183 4.183 23 C -0.250 4.250 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.751 2.919 -11.339 12.295 hybrid contribution -0.260 -0.881 -1.409 1.682 sum 3.491 2.038 -12.748 13.374 Atomic orbital electron populations 1.21493 0.95318 1.00018 1.01249 1.22145 0.97183 1.00477 0.98769 1.18839 0.92767 0.88350 0.87904 0.99197 1.21937 1.28592 1.16147 0.91741 0.94121 1.26633 0.96336 0.96399 1.03327 1.70872 1.23019 1.31259 1.33333 0.83144 0.75331 0.75773 0.73336 1.20367 1.21910 1.20445 1.60571 1.03024 1.60390 1.01651 1.20236 0.91377 0.99525 0.90648 1.18996 0.93992 0.93125 0.98789 1.21288 0.91903 1.00039 1.00711 1.21502 0.97311 0.96203 0.98889 1.21434 0.99028 0.95053 0.97577 1.21345 0.90926 1.01732 1.01550 1.21079 0.89736 0.94793 1.00156 1.98382 1.42608 1.73596 1.87486 1.23191 1.01929 0.99567 0.93634 1.23761 1.03866 0.91606 1.05750 0.93566 0.93462 0.92719 0.93898 0.95068 0.93471 0.84749 0.83995 0.82460 0.82423 0.84662 0.87860 0.87471 0.87576 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.38 71.98 0.68 -4.20 16 2 C -0.15 -6.53 5.43 30.60 0.17 -6.36 16 3 C 0.23 10.99 1.61 44.17 0.07 11.06 16 4 H -0.01 -0.55 6.23 -2.39 -0.01 -0.56 16 5 C -0.55 -29.39 7.24 25.60 0.19 -29.20 16 6 H 0.04 2.27 7.83 -2.91 -0.02 2.25 16 7 C -0.03 -1.67 5.22 84.66 0.44 -1.22 16 8 N -0.95 -57.26 12.95 21.45 0.28 -56.98 16 9 Si 1.10 51.82 29.91 68.60 2.05 53.87 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 N -0.63 -25.25 3.99 -455.77 -1.82 -27.07 16 14 C 0.07 2.56 1.84 2.78 0.01 2.56 16 15 C -0.05 -1.68 4.30 -19.84 -0.09 -1.76 16 16 C -0.12 -3.53 9.39 22.26 0.21 -3.32 16 17 C -0.12 -3.02 10.05 22.27 0.22 -2.79 16 18 C -0.11 -2.91 10.05 22.27 0.22 -2.68 16 19 C -0.14 -4.36 9.83 22.29 0.22 -4.14 16 20 C -0.03 -1.14 6.22 22.32 0.14 -1.00 16 21 Cl -0.05 -2.02 25.84 -2.72 -0.07 -2.09 16 22 C -0.15 -3.90 10.01 30.62 0.31 -3.59 16 23 C -0.21 -5.91 8.71 30.62 0.27 -5.64 16 24 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.05 2.09 6.98 -2.39 -0.02 2.08 16 26 H 0.05 1.88 6.52 -2.39 -0.02 1.87 16 27 H 0.04 1.73 5.96 -2.39 -0.01 1.71 16 28 H 0.03 1.60 6.39 -2.39 -0.02 1.58 16 29 H 0.26 15.70 6.09 -92.70 -0.56 15.14 16 30 H 0.33 12.72 6.30 -89.69 -0.57 12.15 16 31 H 0.14 3.52 5.95 -2.91 -0.02 3.50 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.11 2.55 8.14 -2.39 -0.02 2.54 16 37 H 0.11 2.62 6.10 -2.39 -0.01 2.61 16 38 H 0.09 2.67 7.07 -2.39 -0.02 2.65 16 Total: -1.00 -64.35 313.30 4.20 -60.15 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.71 Total: 24.42 kcal Atomic # 6 Polarization: -55.35 SS G_CDS: 3.05 Total: -52.31 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -1.54 Total: -84.05 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.05 Total: 53.87 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.09 kcal Total: -64.35 4.20 -60.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.688 kcal (2) G-P(sol) polarization free energy of solvation -64.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds