Wall clock time and date at job start Tue Mar 31 2020 00:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47601 * 2 1 4 4 H 1.08999 * 109.46914 * 57.21895 * 3 2 1 5 5 C 1.50691 * 109.47207 * 177.22304 * 3 2 1 6 6 H 1.08010 * 120.00081 * 120.00243 * 5 3 2 7 7 C 1.37875 * 120.00258 * 300.00038 * 5 3 2 8 8 N 1.31518 * 119.99788 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00273 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46868 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47042 * 119.99796 * 9 7 5 12 12 H 1.48499 * 109.47027 * 239.99714 * 9 7 5 13 13 N 1.46899 * 109.46931 * 297.22380 * 3 2 1 14 14 C 1.46898 * 111.00287 * 108.29780 * 13 3 2 15 15 C 1.50696 * 115.56500 * 198.98950 * 14 13 3 16 16 C 1.38238 * 120.00313 * 93.89230 * 15 14 13 17 17 C 1.38228 * 120.01183 * 179.76800 * 16 15 14 18 18 C 1.38267 * 120.02375 * 0.51172 * 17 16 15 19 19 C 1.38189 * 120.01331 * 359.74334 * 18 17 16 20 20 C 1.38333 * 120.01018 * 274.16853 * 15 14 13 21 21 Cl 1.73593 * 120.01235 * 359.95655 * 20 15 14 22 22 C 1.53005 * 117.49693 * 53.30256 * 14 13 3 23 23 C 1.52995 * 59.99985 * 252.50996 * 22 14 13 24 24 H 1.08992 * 109.47365 * 173.09219 * 1 2 3 25 25 H 1.09000 * 109.46681 * 293.09330 * 1 2 3 26 26 H 1.09004 * 109.46634 * 53.08593 * 1 2 3 27 27 H 1.08998 * 109.46758 * 239.99506 * 2 1 3 28 28 H 1.08998 * 109.46853 * 120.00383 * 2 1 3 29 29 H 0.96992 * 120.00058 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00369 * 232.25199 * 13 3 2 31 31 H 1.07999 * 119.99537 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.98682 * 180.22826 * 17 16 15 33 33 H 1.08000 * 119.98783 * 179.76487 * 18 17 16 34 34 H 1.08002 * 120.00531 * 180.02562 * 19 18 17 35 35 H 1.09000 * 117.49847 * 145.02129 * 22 14 13 36 36 H 1.08998 * 117.49543 * 0.02562 * 22 14 13 37 37 H 1.09005 * 117.49931 * 107.48489 * 23 22 14 38 38 H 1.08997 * 117.50148 * 252.50890 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6367 1.9704 0.8640 5 6 3.5455 1.4429 0.0688 6 1 4.1222 1.8976 -0.7231 7 6 4.1867 0.8628 1.1428 8 7 3.4845 0.3096 2.1074 9 14 6.0528 0.8640 1.2285 10 1 6.6029 1.5444 0.0286 11 1 6.4917 1.5837 2.4511 12 1 6.5471 -0.5355 1.2735 13 7 1.6061 2.1153 -1.2316 14 6 0.5562 3.1033 -0.9497 15 6 -0.2716 3.5286 -2.1350 16 6 -1.4664 2.8895 -2.4087 17 6 -2.2282 3.2827 -3.4931 18 6 -1.7905 4.3083 -4.3106 19 6 -0.5937 4.9444 -4.0410 20 6 0.1668 4.5548 -2.9525 21 17 1.6700 5.3537 -2.6129 22 6 0.8452 4.1545 0.1238 23 6 -0.1439 3.0224 0.4083 24 1 -0.3634 -1.0201 -0.1236 25 1 -0.3633 0.4031 0.9453 26 1 -0.3633 0.6173 -0.8217 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 3.9356 -0.0981 2.8631 30 1 2.3878 2.5434 -1.7046 31 1 -1.8068 2.0857 -1.7729 32 1 -3.1634 2.7856 -3.7044 33 1 -2.3843 4.6125 -5.1599 34 1 -0.2521 5.7457 -4.6794 35 1 0.4365 5.1536 -0.0272 36 1 1.8145 4.1131 0.6206 37 1 0.1746 2.2359 1.0926 38 1 -1.2031 3.2767 0.4445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:11 Heat of formation + Delta-G solvation = 48.842403 kcal Electronic energy + Delta-G solvation = -20052.102930 eV Core-core repulsion = 17114.167145 eV Total energy + Delta-G solvation = -2937.935784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.72862 -37.73548 -36.16193 -34.20423 -31.62647 -30.72630 -30.37459 -29.92332 -26.29577 -23.49157 -22.89373 -22.52595 -21.51323 -19.95042 -18.48306 -17.30223 -16.56201 -15.42535 -15.28440 -14.99687 -14.62835 -14.01398 -13.78021 -13.59797 -13.26675 -12.60650 -12.46666 -12.12063 -11.69552 -11.43613 -11.33666 -11.32167 -11.14532 -10.90328 -10.85540 -10.81352 -10.61709 -10.31877 -10.04943 -9.77264 -9.50680 -9.28071 -8.84665 -8.72074 -8.50302 -8.35591 -7.18218 -6.03869 -4.10715 1.27670 1.38381 2.39459 3.27066 3.35588 3.39574 3.73589 4.29881 4.39222 4.71863 4.93566 5.05559 5.22596 5.29662 5.37724 5.44006 5.64443 5.67097 5.74783 5.95861 6.17021 6.18832 6.35819 6.37566 6.45069 6.49074 6.58669 6.68536 6.68997 6.81566 6.92064 7.08367 7.20484 7.48144 7.58136 7.77758 7.98472 8.22486 8.37508 8.66027 9.01510 9.54897 11.00678 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.005885 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.560809 B = 4756.838621 C = 5508.932494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C 0.203 3.797 4 H 0.036 0.964 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.643 5.643 14 C 0.092 3.908 15 C -0.011 4.011 16 C -0.089 4.089 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.026 4.026 21 Cl -0.064 7.064 22 C -0.202 4.202 23 C -0.178 4.178 24 H 0.024 0.976 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.088 0.912 29 H 0.260 0.740 30 H 0.338 0.662 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 7.634 -8.692 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 C 0.096 3.904 4 H 0.053 0.947 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.273 5.273 14 C 0.000 4.000 15 C -0.013 4.013 16 C -0.108 4.108 17 C -0.139 4.139 18 C -0.137 4.137 19 C -0.136 4.136 20 C -0.053 4.053 21 Cl -0.035 7.035 22 C -0.242 4.242 23 C -0.215 4.215 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.630 7.086 -8.665 15.436 hybrid contribution 1.695 0.677 0.538 1.903 sum -8.935 7.762 -8.127 14.357 Atomic orbital electron populations 1.21887 0.99548 0.98711 0.99987 1.21516 0.91615 0.99386 1.01722 1.19425 0.93634 0.91179 0.86138 0.94685 1.21552 0.91517 1.37426 1.06115 0.92487 1.24877 0.98147 0.95065 0.95536 1.69885 1.34893 1.37898 1.09827 0.86549 0.85880 0.77741 0.77905 1.19829 1.21104 1.20982 1.60530 1.12988 1.26689 1.27129 1.20008 0.97462 0.96373 0.86203 1.18955 0.94278 0.93249 0.94815 1.21044 0.93528 0.98897 0.97336 1.21201 0.99988 0.97411 0.95268 1.21016 0.95966 0.96810 0.99869 1.20978 0.95048 1.00999 0.96591 1.20879 0.89634 0.97255 0.97545 1.98374 1.31538 1.78784 1.94818 1.23551 1.01444 0.94188 1.04993 1.23636 0.97068 1.02141 0.98682 0.95652 0.94511 0.93095 0.94737 0.89414 0.92968 0.84234 0.85054 0.85723 0.85622 0.85385 0.89985 0.87951 0.86050 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.56 37.16 0.32 -2.56 16 2 C -0.10 -2.46 5.44 -26.73 -0.15 -2.61 16 3 C 0.20 4.86 1.67 -68.87 -0.12 4.75 16 4 H 0.04 0.90 4.24 -51.93 -0.22 0.68 16 5 C -0.53 -14.06 8.60 -34.45 -0.30 -14.35 16 6 H 0.06 1.53 7.35 -52.48 -0.39 1.14 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 8 N -0.89 -24.62 11.30 55.43 0.63 -24.00 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 N -0.64 -13.53 6.04 -95.42 -0.58 -14.10 16 14 C 0.09 1.66 1.31 -132.75 -0.17 1.49 16 15 C -0.01 -0.18 5.25 -104.59 -0.55 -0.73 16 16 C -0.09 -1.26 9.49 -39.58 -0.38 -1.63 16 17 C -0.12 -1.39 10.05 -39.57 -0.40 -1.79 16 18 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 19 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 20 C -0.03 -0.39 6.28 -39.50 -0.25 -0.64 16 21 Cl -0.06 -0.98 26.80 -51.86 -1.39 -2.36 16 22 C -0.20 -3.63 8.22 -26.73 -0.22 -3.85 16 23 C -0.18 -3.16 7.79 -26.73 -0.21 -3.37 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.71 6.80 -51.93 -0.35 0.36 16 26 H 0.05 0.97 6.06 -51.93 -0.31 0.66 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 2.32 6.00 -51.93 -0.31 2.01 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.34 7.37 7.91 -39.29 -0.31 7.06 16 31 H 0.13 1.80 7.56 -52.49 -0.40 1.40 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.08 1.35 8.02 -51.93 -0.42 0.93 16 36 H 0.10 2.09 7.69 -51.93 -0.40 1.69 16 37 H 0.12 2.44 4.03 -51.93 -0.21 2.23 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -27.32 315.42 -9.89 -37.21 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.99 Total: 9.54 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -3.29 Total: -27.13 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.05 Total: -38.10 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.39 Total: -2.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.32 -9.89 -37.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.057 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds