Wall clock time and date at job start Tue Mar 31 2020 00:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47601 * 2 1 4 4 H 1.08999 * 109.46914 * 57.21895 * 3 2 1 5 5 C 1.50691 * 109.47207 * 177.22304 * 3 2 1 6 6 H 1.08010 * 120.00081 * 120.00243 * 5 3 2 7 7 C 1.37875 * 120.00258 * 300.00038 * 5 3 2 8 8 N 1.31518 * 119.99788 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00273 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46868 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47042 * 119.99796 * 9 7 5 12 12 H 1.48499 * 109.47027 * 239.99714 * 9 7 5 13 13 N 1.46899 * 109.46931 * 297.22380 * 3 2 1 14 14 C 1.46898 * 111.00287 * 108.29780 * 13 3 2 15 15 C 1.50696 * 115.56500 * 198.98950 * 14 13 3 16 16 C 1.38238 * 120.00313 * 93.89230 * 15 14 13 17 17 C 1.38228 * 120.01183 * 179.76800 * 16 15 14 18 18 C 1.38267 * 120.02375 * 0.51172 * 17 16 15 19 19 C 1.38189 * 120.01331 * 359.74334 * 18 17 16 20 20 C 1.38333 * 120.01018 * 274.16853 * 15 14 13 21 21 Cl 1.73593 * 120.01235 * 359.95655 * 20 15 14 22 22 C 1.53005 * 117.49693 * 53.30256 * 14 13 3 23 23 C 1.52995 * 59.99985 * 252.50996 * 22 14 13 24 24 H 1.08992 * 109.47365 * 173.09219 * 1 2 3 25 25 H 1.09000 * 109.46681 * 293.09330 * 1 2 3 26 26 H 1.09004 * 109.46634 * 53.08593 * 1 2 3 27 27 H 1.08998 * 109.46758 * 239.99506 * 2 1 3 28 28 H 1.08998 * 109.46853 * 120.00383 * 2 1 3 29 29 H 0.96992 * 120.00058 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00369 * 232.25199 * 13 3 2 31 31 H 1.07999 * 119.99537 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.98682 * 180.22826 * 17 16 15 33 33 H 1.08000 * 119.98783 * 179.76487 * 18 17 16 34 34 H 1.08002 * 120.00531 * 180.02562 * 19 18 17 35 35 H 1.09000 * 117.49847 * 145.02129 * 22 14 13 36 36 H 1.08998 * 117.49543 * 0.02562 * 22 14 13 37 37 H 1.09005 * 117.49931 * 107.48489 * 23 22 14 38 38 H 1.08997 * 117.50148 * 252.50890 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6367 1.9704 0.8640 5 6 3.5455 1.4429 0.0688 6 1 4.1222 1.8976 -0.7231 7 6 4.1867 0.8628 1.1428 8 7 3.4845 0.3096 2.1074 9 14 6.0528 0.8640 1.2285 10 1 6.6029 1.5444 0.0286 11 1 6.4917 1.5837 2.4511 12 1 6.5471 -0.5355 1.2735 13 7 1.6061 2.1153 -1.2316 14 6 0.5562 3.1033 -0.9497 15 6 -0.2716 3.5286 -2.1350 16 6 -1.4664 2.8895 -2.4087 17 6 -2.2282 3.2827 -3.4931 18 6 -1.7905 4.3083 -4.3106 19 6 -0.5937 4.9444 -4.0410 20 6 0.1668 4.5548 -2.9525 21 17 1.6700 5.3537 -2.6129 22 6 0.8452 4.1545 0.1238 23 6 -0.1439 3.0224 0.4083 24 1 -0.3634 -1.0201 -0.1236 25 1 -0.3633 0.4031 0.9453 26 1 -0.3633 0.6173 -0.8217 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 3.9356 -0.0981 2.8631 30 1 2.3878 2.5434 -1.7046 31 1 -1.8068 2.0857 -1.7729 32 1 -3.1634 2.7856 -3.7044 33 1 -2.3843 4.6125 -5.1599 34 1 -0.2521 5.7457 -4.6794 35 1 0.4365 5.1536 -0.0272 36 1 1.8145 4.1131 0.6206 37 1 0.1746 2.2359 1.0926 38 1 -1.2031 3.2767 0.4445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:10 Heat of formation + Delta-G solvation = 34.699704 kcal Electronic energy + Delta-G solvation = -20052.716203 eV Core-core repulsion = 17114.167145 eV Total energy + Delta-G solvation = -2938.549058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95999 -39.07737 -37.26612 -35.98783 -33.57838 -31.79324 -31.60844 -31.37633 -28.21440 -25.02616 -24.22101 -23.89314 -22.80124 -21.48574 -20.06905 -18.99963 -17.85538 -17.02277 -16.72829 -16.27506 -16.11064 -15.46808 -15.23273 -14.67267 -14.54970 -14.18976 -13.97247 -13.77337 -13.29397 -13.09893 -12.87006 -12.70914 -12.49920 -12.47339 -12.38062 -12.24222 -12.06765 -11.90583 -11.70826 -11.50766 -11.19399 -10.87496 -10.73893 -10.35570 -9.80367 -9.55974 -8.88558 -8.10951 -6.24398 0.28047 0.39705 1.31312 1.36482 1.39512 1.49623 2.39842 2.74313 2.89024 3.15256 3.45179 3.81472 3.96411 4.07817 4.18516 4.24273 4.46555 4.56990 4.61106 4.69778 4.74177 4.80127 4.86003 4.96229 5.02240 5.14057 5.22733 5.29124 5.38164 5.44094 5.52124 5.56162 5.61510 5.72313 5.75865 5.96452 6.02542 6.28713 6.45723 6.80833 7.03304 7.44388 8.91852 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.005885 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.560809 B = 4756.838621 C = 5508.932494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 C 0.211 3.789 4 H 0.019 0.981 5 C -0.545 4.545 6 H 0.048 0.952 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.643 5.643 14 C 0.098 3.902 15 C -0.037 4.037 16 C -0.101 4.101 17 C -0.113 4.113 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.043 4.043 21 Cl -0.080 7.080 22 C -0.200 4.200 23 C -0.172 4.172 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.019 0.981 28 H 0.058 0.942 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.131 0.869 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.148 0.852 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 8.283 -10.506 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.138 4.138 3 C 0.104 3.896 4 H 0.037 0.963 5 C -0.584 4.584 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.272 5.272 14 C 0.006 3.994 15 C -0.039 4.039 16 C -0.120 4.120 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.137 4.137 20 C -0.070 4.070 21 Cl -0.051 7.051 22 C -0.240 4.240 23 C -0.209 4.209 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.165 0.835 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.530 7.740 -10.484 18.078 hybrid contribution 2.216 0.503 1.039 2.499 sum -10.314 8.243 -9.445 16.234 Atomic orbital electron populations 1.21723 0.96456 1.00031 1.00505 1.21365 0.94374 0.98660 0.99420 1.19194 0.92188 0.91481 0.86786 0.96332 1.21876 0.93259 1.37281 1.05948 0.93393 1.25558 1.02048 0.94883 0.95338 1.69998 1.36284 1.38423 1.10188 0.85639 0.81229 0.77731 0.77817 1.19672 1.20708 1.20575 1.60470 1.13193 1.27967 1.25543 1.20043 0.96664 0.95272 0.87455 1.18853 0.95213 0.94945 0.94848 1.21168 0.93268 0.99017 0.98511 1.21574 1.00554 0.97099 0.93829 1.21487 0.95205 0.95464 1.00244 1.21300 0.95248 1.01427 0.95750 1.21056 0.89618 0.97623 0.98659 1.98365 1.32707 1.79042 1.95009 1.23385 1.00166 0.95224 1.05232 1.23560 0.98300 1.01033 0.98010 0.93955 0.94262 0.92145 0.96232 0.92329 0.92940 0.85088 0.85075 0.82504 0.81838 0.83450 0.88345 0.91130 0.88619 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.56 71.98 0.62 -4.52 16 2 C -0.10 -4.84 5.44 30.60 0.17 -4.67 16 3 C 0.21 10.46 1.67 44.16 0.07 10.54 16 4 H 0.02 1.01 4.24 -2.39 -0.01 1.00 16 5 C -0.54 -30.03 8.60 25.60 0.22 -29.81 16 6 H 0.05 2.66 7.35 -2.91 -0.02 2.64 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -51.93 11.30 21.45 0.24 -51.69 16 9 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 N -0.64 -27.63 6.04 -455.81 -2.75 -30.39 16 14 C 0.10 3.54 1.31 2.78 0.00 3.54 16 15 C -0.04 -1.13 5.25 -19.84 -0.10 -1.24 16 16 C -0.10 -2.58 9.49 22.27 0.21 -2.37 16 17 C -0.11 -2.12 10.05 22.27 0.22 -1.90 16 18 C -0.11 -1.82 10.05 22.26 0.22 -1.60 16 19 C -0.12 -2.56 9.83 22.29 0.22 -2.34 16 20 C -0.04 -1.20 6.28 22.32 0.14 -1.06 16 21 Cl -0.08 -2.42 26.80 -2.72 -0.07 -2.49 16 22 C -0.20 -7.35 8.22 30.59 0.25 -7.10 16 23 C -0.17 -6.10 7.79 30.59 0.24 -5.86 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.04 1.51 6.80 -2.39 -0.02 1.50 16 26 H 0.06 2.26 6.06 -2.38 -0.01 2.24 16 27 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 3.20 6.00 -2.39 -0.01 3.19 16 29 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.33 14.90 7.91 -89.69 -0.71 14.19 16 31 H 0.13 3.28 7.56 -2.91 -0.02 3.26 16 32 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.10 3.24 8.02 -2.39 -0.02 3.22 16 36 H 0.07 3.03 7.69 -2.39 -0.02 3.01 16 37 H 0.10 3.94 4.03 -2.38 -0.01 3.94 16 38 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -60.52 315.42 2.74 -57.78 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.37 Total: 27.34 kcal Atomic # 6 Polarization: -49.69 SS G_CDS: 2.93 Total: -46.75 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.51 Total: -82.07 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.07 Total: -2.49 kcal Total: -60.52 2.74 -57.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.483 kcal (2) G-P(sol) polarization free energy of solvation -60.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds