Wall clock time and date at job start Tue Mar 31 2020 00:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46901 * 2 1 4 4 H 1.08993 * 109.47055 * 52.22672 * 3 2 1 5 5 C 1.50701 * 109.47221 * 172.22779 * 3 2 1 6 6 H 1.07999 * 120.00299 * 119.99424 * 5 3 2 7 7 C 1.37881 * 119.99497 * 299.99824 * 5 3 2 8 8 N 1.31512 * 120.00308 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99622 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47131 * 59.99892 * 9 7 5 11 11 H 1.48497 * 109.47027 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47241 * 300.00017 * 9 7 5 13 13 N 1.46898 * 109.47038 * 292.22373 * 3 2 1 14 14 C 1.46897 * 111.00024 * 157.85678 * 13 3 2 15 15 C 1.50702 * 115.54842 * 266.63890 * 14 13 3 16 16 C 1.38267 * 119.98954 * 256.78158 * 15 14 13 17 17 C 1.38221 * 120.02374 * 179.97438 * 16 15 14 18 18 C 1.38235 * 120.01370 * 0.02562 * 17 16 15 19 19 C 1.38330 * 119.98913 * 0.02562 * 18 17 16 20 20 Cl 1.73594 * 120.01664 * 180.02562 * 19 18 17 21 21 C 1.38189 * 119.99575 * 76.50875 * 15 14 13 22 22 C 1.52996 * 117.49947 * 120.93096 * 14 13 3 23 23 C 1.53001 * 117.49896 * 52.30579 * 14 13 3 24 24 H 1.09009 * 109.46934 * 211.05461 * 1 2 3 25 25 H 1.08998 * 109.47420 * 331.04705 * 1 2 3 26 26 H 1.08995 * 109.47516 * 91.05745 * 1 2 3 27 27 H 1.08992 * 109.47267 * 239.99967 * 2 1 3 28 28 H 1.09001 * 109.47237 * 119.99353 * 2 1 3 29 29 H 0.96999 * 119.99614 * 179.97438 * 8 7 5 30 30 H 1.00910 * 110.99963 * 33.90280 * 13 3 2 31 31 H 1.07992 * 119.99016 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.99605 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.00626 * 179.97438 * 18 17 16 34 34 H 1.07995 * 120.00494 * 0.02562 * 21 15 14 35 35 H 1.09002 * 117.49583 * 359.97438 * 22 14 13 36 36 H 1.09002 * 117.50200 * 145.02017 * 22 14 13 37 37 H 1.08998 * 117.49955 * 214.97924 * 23 14 13 38 38 H 1.09005 * 117.49603 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5675 1.9949 0.8123 5 6 3.5346 1.4470 0.1921 6 1 4.1749 1.8792 -0.5627 7 6 4.0847 0.8992 1.3316 8 7 3.3051 0.3734 2.2510 9 14 5.9376 0.9041 1.5695 10 1 6.4330 2.3040 1.5691 11 1 6.2718 0.2616 2.8659 12 1 6.5807 0.1511 0.4629 13 7 1.7092 2.0788 -1.2821 14 6 1.6897 3.5421 -1.1541 15 6 0.3434 4.1506 -0.8570 16 6 -0.3694 4.7764 -1.8631 17 6 -1.6045 5.3343 -1.5915 18 6 -2.1275 5.2674 -0.3137 19 6 -1.4144 4.6424 0.6935 20 17 -2.0709 4.5574 2.2983 21 6 -0.1810 4.0782 0.4195 22 6 2.6468 4.3416 -2.0404 23 6 2.9196 4.2140 -0.5403 24 1 -0.3633 -0.8805 0.5302 25 1 -0.3634 0.8992 0.4975 26 1 -0.3634 -0.0190 -1.0274 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.6923 -0.0123 3.0524 30 1 0.8306 1.7354 -1.6402 31 1 0.0390 4.8292 -2.8614 32 1 -2.1610 5.8226 -2.3777 33 1 -3.0924 5.7037 -0.1015 34 1 0.3741 3.5859 1.2042 35 1 3.2912 3.7817 -2.7182 36 1 2.3028 5.3080 -2.4090 37 1 2.7551 5.0965 0.0780 38 1 3.7435 3.5703 -0.2319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:17 Heat of formation + Delta-G solvation = 39.425830 kcal Electronic energy + Delta-G solvation = -19968.456394 eV Core-core repulsion = 17030.112276 eV Total energy + Delta-G solvation = -2938.344118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.62750 -37.36552 -36.18654 -34.60518 -31.91484 -30.72577 -30.30849 -29.68761 -26.54900 -23.24088 -22.81355 -22.66052 -21.31714 -19.68709 -19.08159 -17.13927 -16.26897 -15.57099 -15.16539 -14.77296 -14.66477 -14.16669 -13.63759 -13.50447 -13.30006 -12.99571 -12.68539 -12.12983 -11.73558 -11.49542 -11.41695 -11.36976 -11.24601 -10.93795 -10.80029 -10.76410 -10.58537 -10.27204 -9.87767 -9.77410 -9.69275 -9.10842 -9.06004 -8.72382 -8.54529 -8.34691 -7.26553 -5.99056 -4.01925 1.28646 1.40540 2.26483 3.31981 3.37187 3.39803 3.75408 4.39372 4.44483 4.82822 4.95657 5.08486 5.18936 5.31223 5.36959 5.53526 5.68303 5.82283 5.98608 6.03777 6.14730 6.18178 6.21499 6.28507 6.37076 6.44174 6.45042 6.69288 6.74400 6.86162 6.95510 7.10186 7.17522 7.20289 7.51470 7.75761 7.86443 8.27203 8.36641 8.70873 9.02058 9.60528 11.06064 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.006015 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.104031 B = 4653.816153 C = 5138.283000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.007 0.993 5 C -0.492 4.492 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.641 5.641 14 C 0.081 3.919 15 C -0.046 4.046 16 C -0.106 4.106 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.034 4.034 20 Cl -0.077 7.077 21 C -0.093 4.093 22 C -0.168 4.168 23 C -0.160 4.160 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.260 0.740 30 H 0.323 0.677 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 8.640 -5.319 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.115 3.885 4 H 0.025 0.975 5 C -0.531 4.531 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.269 5.269 14 C -0.012 4.012 15 C -0.049 4.049 16 C -0.125 4.125 17 C -0.132 4.132 18 C -0.140 4.140 19 C -0.061 4.061 20 Cl -0.048 7.048 21 C -0.112 4.112 22 C -0.206 4.206 23 C -0.197 4.197 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.406 8.470 -5.207 13.020 hybrid contribution -0.058 0.030 0.896 0.898 sum -8.464 8.500 -4.311 12.746 Atomic orbital electron populations 1.21893 0.99482 1.00253 0.99067 1.21789 0.91315 1.00421 1.03052 1.19265 0.95643 0.89702 0.83926 0.97546 1.21144 0.91383 1.37120 1.03452 0.91811 1.24940 0.97740 0.95604 0.96098 1.69858 1.34471 1.39595 1.09191 0.86680 0.85958 0.78262 0.77227 1.20314 1.21471 1.20326 1.60772 1.35475 0.99383 1.31319 1.19863 0.86460 0.89193 1.05669 1.19870 0.96344 0.96447 0.92228 1.21170 0.94408 0.97476 0.99437 1.21033 0.96009 1.00247 0.95937 1.20964 1.00103 1.00582 0.92361 1.20928 0.95717 1.03062 0.86371 1.98359 1.85792 1.97291 1.23404 1.21169 0.93830 0.98356 0.97820 1.23095 1.03051 0.99653 0.94821 1.23544 1.00533 1.01421 0.94226 0.94300 0.93984 0.94777 0.94098 0.88139 0.92975 0.86028 0.85440 0.85467 0.85484 0.84376 0.88483 0.90207 0.90496 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.31 37.16 0.35 -2.58 16 2 C -0.13 -2.93 5.37 -26.73 -0.14 -3.08 16 3 C 0.22 5.21 1.74 -68.86 -0.12 5.09 16 4 H 0.01 0.18 6.15 -51.93 -0.32 -0.14 16 5 C -0.49 -12.72 6.58 -34.44 -0.23 -12.95 16 6 H 0.06 1.67 6.65 -52.49 -0.35 1.32 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.42 16 8 N -0.89 -24.58 11.29 55.43 0.63 -23.95 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.64 -13.10 6.49 -95.41 -0.62 -13.72 16 14 C 0.08 1.46 1.89 -132.76 -0.25 1.21 16 15 C -0.05 -0.76 5.09 -104.63 -0.53 -1.29 16 16 C -0.11 -1.44 9.25 -39.58 -0.37 -1.81 16 17 C -0.11 -1.36 10.05 -39.59 -0.40 -1.75 16 18 C -0.12 -1.54 9.83 -39.55 -0.39 -1.93 16 19 C -0.03 -0.52 6.32 -39.50 -0.25 -0.76 16 20 Cl -0.08 -1.12 28.96 -51.86 -1.50 -2.62 16 21 C -0.09 -1.58 9.32 -39.55 -0.37 -1.95 16 22 C -0.17 -2.75 9.70 -26.73 -0.26 -3.01 16 23 C -0.16 -3.02 9.31 -26.73 -0.25 -3.27 16 24 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.04 0.84 7.68 -51.93 -0.40 0.44 16 26 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.10 2.61 5.90 -51.93 -0.31 2.31 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.32 6.26 7.19 -39.29 -0.28 5.98 16 31 H 0.13 1.54 7.73 -52.49 -0.41 1.13 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 2.69 6.75 -52.49 -0.35 2.33 16 35 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.08 1.12 7.82 -51.93 -0.41 0.71 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.14 2.97 4.81 -51.93 -0.25 2.72 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -26.51 322.15 -10.11 -36.62 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.15 Total: 9.68 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.30 Total: -26.66 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.01 Total: -37.67 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.51 -10.11 -36.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.044 kcal (2) G-P(sol) polarization free energy of solvation -26.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds