Wall clock time and date at job start Tue Mar 31 2020 00:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46901 * 2 1 4 4 H 1.08993 * 109.47055 * 52.22672 * 3 2 1 5 5 C 1.50701 * 109.47221 * 172.22779 * 3 2 1 6 6 H 1.07999 * 120.00299 * 119.99424 * 5 3 2 7 7 C 1.37881 * 119.99497 * 299.99824 * 5 3 2 8 8 N 1.31512 * 120.00308 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99622 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47131 * 59.99892 * 9 7 5 11 11 H 1.48497 * 109.47027 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47241 * 300.00017 * 9 7 5 13 13 N 1.46898 * 109.47038 * 292.22373 * 3 2 1 14 14 C 1.46897 * 111.00024 * 157.85678 * 13 3 2 15 15 C 1.50702 * 115.54842 * 266.63890 * 14 13 3 16 16 C 1.38267 * 119.98954 * 256.78158 * 15 14 13 17 17 C 1.38221 * 120.02374 * 179.97438 * 16 15 14 18 18 C 1.38235 * 120.01370 * 0.02562 * 17 16 15 19 19 C 1.38330 * 119.98913 * 0.02562 * 18 17 16 20 20 Cl 1.73594 * 120.01664 * 180.02562 * 19 18 17 21 21 C 1.38189 * 119.99575 * 76.50875 * 15 14 13 22 22 C 1.52996 * 117.49947 * 120.93096 * 14 13 3 23 23 C 1.53001 * 117.49896 * 52.30579 * 14 13 3 24 24 H 1.09009 * 109.46934 * 211.05461 * 1 2 3 25 25 H 1.08998 * 109.47420 * 331.04705 * 1 2 3 26 26 H 1.08995 * 109.47516 * 91.05745 * 1 2 3 27 27 H 1.08992 * 109.47267 * 239.99967 * 2 1 3 28 28 H 1.09001 * 109.47237 * 119.99353 * 2 1 3 29 29 H 0.96999 * 119.99614 * 179.97438 * 8 7 5 30 30 H 1.00910 * 110.99963 * 33.90280 * 13 3 2 31 31 H 1.07992 * 119.99016 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.99605 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.00626 * 179.97438 * 18 17 16 34 34 H 1.07995 * 120.00494 * 0.02562 * 21 15 14 35 35 H 1.09002 * 117.49583 * 359.97438 * 22 14 13 36 36 H 1.09002 * 117.50200 * 145.02017 * 22 14 13 37 37 H 1.08998 * 117.49955 * 214.97924 * 23 14 13 38 38 H 1.09005 * 117.49603 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5675 1.9949 0.8123 5 6 3.5346 1.4470 0.1921 6 1 4.1749 1.8792 -0.5627 7 6 4.0847 0.8992 1.3316 8 7 3.3051 0.3734 2.2510 9 14 5.9376 0.9041 1.5695 10 1 6.4330 2.3040 1.5691 11 1 6.2718 0.2616 2.8659 12 1 6.5807 0.1511 0.4629 13 7 1.7092 2.0788 -1.2821 14 6 1.6897 3.5421 -1.1541 15 6 0.3434 4.1506 -0.8570 16 6 -0.3694 4.7764 -1.8631 17 6 -1.6045 5.3343 -1.5915 18 6 -2.1275 5.2674 -0.3137 19 6 -1.4144 4.6424 0.6935 20 17 -2.0709 4.5574 2.2983 21 6 -0.1810 4.0782 0.4195 22 6 2.6468 4.3416 -2.0404 23 6 2.9196 4.2140 -0.5403 24 1 -0.3633 -0.8805 0.5302 25 1 -0.3634 0.8992 0.4975 26 1 -0.3634 -0.0190 -1.0274 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.6923 -0.0123 3.0524 30 1 0.8306 1.7354 -1.6402 31 1 0.0390 4.8292 -2.8614 32 1 -2.1610 5.8226 -2.3777 33 1 -3.0924 5.7037 -0.1015 34 1 0.3741 3.5859 1.2042 35 1 3.2912 3.7817 -2.7182 36 1 2.3028 5.3080 -2.4090 37 1 2.7551 5.0965 0.0780 38 1 3.7435 3.5703 -0.2319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:16 Heat of formation + Delta-G solvation = 25.937834 kcal Electronic energy + Delta-G solvation = -19969.041278 eV Core-core repulsion = 17030.112276 eV Total energy + Delta-G solvation = -2938.929001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86166 -38.75357 -37.37262 -36.29129 -33.87998 -31.86305 -31.43832 -31.32480 -28.46215 -24.85209 -24.14482 -23.98364 -22.66706 -21.36845 -20.56685 -18.70207 -17.89107 -16.87713 -16.68133 -16.28589 -15.97347 -15.78378 -15.08826 -14.77630 -14.65500 -14.50532 -14.29596 -13.59440 -13.43347 -13.14138 -12.82465 -12.67603 -12.61118 -12.50994 -12.45032 -12.21613 -12.02579 -11.89289 -11.62967 -11.52211 -11.31526 -10.95587 -10.60291 -10.36393 -9.89760 -9.67741 -8.93640 -8.03391 -6.11521 0.19145 0.29910 1.14201 1.42430 1.42984 1.49965 2.44607 2.65060 3.00969 3.21260 3.58621 3.64353 3.94518 4.13757 4.22047 4.32019 4.40559 4.50553 4.53524 4.59074 4.71508 4.75429 4.81251 4.90993 4.97410 5.13375 5.22191 5.26414 5.32253 5.36858 5.42295 5.57264 5.62512 5.66556 5.79618 5.87869 5.89352 6.38979 6.53933 6.95687 7.01383 7.53846 8.99969 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.006015 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.104031 B = 4653.816153 C = 5138.283000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.234 3.766 4 H -0.025 1.025 5 C -0.495 4.495 6 H 0.057 0.943 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.644 5.644 14 C 0.073 3.927 15 C -0.062 4.062 16 C -0.101 4.101 17 C -0.097 4.097 18 C -0.113 4.113 19 C -0.045 4.045 20 Cl -0.081 7.081 21 C -0.115 4.115 22 C -0.136 4.136 23 C -0.184 4.184 24 H 0.048 0.952 25 H 0.031 0.969 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.257 0.743 30 H 0.329 0.671 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 10.292 -7.735 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C 0.126 3.874 4 H -0.008 1.008 5 C -0.534 4.534 6 H 0.075 0.925 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.773 3.227 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.272 5.272 14 C -0.019 4.019 15 C -0.064 4.064 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.072 4.072 20 Cl -0.052 7.052 21 C -0.134 4.134 22 C -0.174 4.174 23 C -0.221 4.221 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.189 0.811 33 H 0.173 0.827 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.914 10.134 -7.639 16.104 hybrid contribution 0.364 -0.420 1.622 1.714 sum -9.550 9.713 -6.018 14.892 Atomic orbital electron populations 1.21731 0.96681 1.00208 1.00736 1.21639 0.93853 0.99607 1.01192 1.18937 0.94126 0.89844 0.84477 1.00795 1.21393 0.92723 1.36183 1.03100 0.92538 1.25602 1.01387 0.95692 0.96087 1.69999 1.35812 1.40652 1.09515 0.85797 0.81675 0.78276 0.76998 1.19869 1.21477 1.19906 1.60655 1.36031 1.01212 1.29331 1.19959 0.87593 0.87990 1.06373 1.19705 0.95798 0.98134 0.92761 1.21418 0.94759 0.96361 0.99433 1.21500 0.95125 0.98479 0.96403 1.21357 1.00745 0.99107 0.91991 1.21047 0.95418 1.03702 0.87000 1.98353 1.85614 1.97353 1.23919 1.20905 0.94969 1.00058 0.97504 1.23126 1.01065 1.00481 0.92684 1.23352 1.00395 1.01576 0.96754 0.93291 0.94988 0.92194 0.94401 0.91384 0.93333 0.85329 0.83178 0.81136 0.82682 0.88421 0.88804 0.86789 0.90046 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 9.31 71.98 0.67 -4.66 16 2 C -0.12 -5.90 5.37 30.60 0.16 -5.73 16 3 C 0.23 11.45 1.74 44.17 0.08 11.52 16 4 H -0.03 -1.41 6.15 -2.39 -0.01 -1.42 16 5 C -0.50 -26.60 6.58 25.60 0.17 -26.44 16 6 H 0.06 3.06 6.65 -2.91 -0.02 3.04 16 7 C 0.01 0.56 5.28 84.66 0.45 1.01 16 8 N -0.92 -52.94 11.29 21.45 0.24 -52.69 16 9 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.64 -26.50 6.49 -455.79 -2.96 -29.46 16 14 C 0.07 2.63 1.89 2.78 0.01 2.63 16 15 C -0.06 -1.95 5.09 -19.87 -0.10 -2.05 16 16 C -0.10 -2.37 9.25 22.27 0.21 -2.16 16 17 C -0.10 -1.83 10.05 22.27 0.22 -1.61 16 18 C -0.11 -2.48 9.83 22.29 0.22 -2.26 16 19 C -0.05 -1.31 6.32 22.33 0.14 -1.17 16 20 Cl -0.08 -2.33 28.96 -2.72 -0.08 -2.41 16 21 C -0.11 -3.99 9.32 22.29 0.21 -3.78 16 22 C -0.14 -4.20 9.70 30.59 0.30 -3.90 16 23 C -0.18 -7.06 9.31 30.60 0.28 -6.78 16 24 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.03 1.29 7.68 -2.39 -0.02 1.27 16 26 H 0.06 2.02 7.82 -2.39 -0.02 2.00 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 3.69 5.90 -2.39 -0.01 3.68 16 29 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.33 12.60 7.19 -89.69 -0.65 11.95 16 31 H 0.15 2.84 7.73 -2.91 -0.02 2.81 16 32 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.10 4.13 6.75 -2.91 -0.02 4.11 16 35 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.11 2.76 7.82 -2.39 -0.02 2.74 16 37 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.10 4.65 4.81 -2.38 -0.01 4.64 16 Total: -1.00 -60.56 322.15 2.66 -57.89 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.42 Total: 26.04 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 3.01 Total: -45.37 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -2.72 Total: -82.16 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.41 kcal Total: -60.56 2.66 -57.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.830 kcal (2) G-P(sol) polarization free energy of solvation -60.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds