Wall clock time and date at job start Tue Mar 31 2020 00:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46806 * 2 1 4 4 H 1.08994 * 109.47655 * 305.83057 * 3 2 1 5 5 C 1.50706 * 109.47079 * 185.83089 * 3 2 1 6 6 H 1.07993 * 120.00097 * 274.99672 * 5 3 2 7 7 C 1.37878 * 119.99620 * 94.99875 * 5 3 2 8 8 N 1.31515 * 119.99947 * 184.83517 * 7 5 3 9 9 Si 1.86799 * 120.00288 * 4.82829 * 7 5 3 10 10 H 1.48497 * 109.46931 * 84.86770 * 9 7 5 11 11 H 1.48495 * 109.47245 * 204.86564 * 9 7 5 12 12 H 1.48503 * 109.47223 * 324.86803 * 9 7 5 13 13 N 1.46903 * 109.47324 * 65.83589 * 3 2 1 14 14 C 1.46903 * 110.99651 * 274.99738 * 13 3 2 15 15 H 1.08997 * 115.55058 * 9.42104 * 14 13 3 16 16 C 1.52996 * 117.49749 * 223.74328 * 14 13 3 17 17 C 1.53005 * 117.49471 * 155.08407 * 14 13 3 18 18 H 1.08992 * 117.50173 * 0.02562 * 17 14 13 19 19 C 1.50707 * 117.49780 * 215.00326 * 17 14 13 20 20 C 1.38242 * 119.98429 * 299.73319 * 19 17 14 21 21 C 1.38215 * 120.01200 * 179.72699 * 20 19 17 22 22 C 1.38352 * 119.98364 * 0.54306 * 21 20 19 23 23 Cl 1.73601 * 120.01404 * 179.70591 * 22 21 20 24 24 C 1.38357 * 119.97388 * 359.72863 * 22 21 20 25 25 C 1.38215 * 119.98706 * 359.97438 * 24 22 21 26 26 H 1.08993 * 109.47415 * 299.99974 * 1 2 3 27 27 H 1.09003 * 109.46910 * 60.00471 * 1 2 3 28 28 H 1.09007 * 109.46638 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47415 * 240.00026 * 2 1 3 30 30 H 1.09003 * 109.46910 * 119.99529 * 2 1 3 31 31 H 0.96994 * 120.00158 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99938 * 38.94863 * 13 3 2 33 33 H 1.08994 * 117.50303 * 0.02562 * 16 14 13 34 34 H 1.09000 * 117.49630 * 145.02681 * 16 14 13 35 35 H 1.07999 * 119.99412 * 359.97438 * 20 19 17 36 36 H 1.07995 * 120.00960 * 180.26519 * 21 20 19 37 37 H 1.08002 * 120.00594 * 179.97438 * 24 22 21 38 38 H 1.07998 * 119.99327 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5939 1.9856 -0.8331 5 6 3.5400 1.4450 -0.1444 6 1 4.1666 1.3330 0.7280 7 6 4.1124 1.5905 -1.3903 8 7 5.4169 1.4976 -1.5295 9 14 3.0351 1.9192 -2.8805 10 1 2.7685 3.3761 -2.9868 11 1 3.7306 1.4525 -4.1067 12 1 1.7498 1.1902 -2.7326 13 7 1.6686 2.0932 1.2636 14 6 0.3073 2.6410 1.1935 15 1 -0.2696 2.3554 0.3139 16 6 0.0797 4.0426 1.7633 17 6 -0.4521 2.8167 2.5100 18 1 0.0584 2.5262 3.4282 19 6 -1.9407 2.5817 2.4914 20 6 -2.7516 3.3524 1.6793 21 6 -4.1162 3.1336 1.6575 22 6 -4.6717 2.1507 2.4571 23 17 -6.3864 1.8803 2.4360 24 6 -3.8601 1.3835 3.2738 25 6 -2.4950 1.5991 3.2901 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8195 1.5995 -2.4060 32 1 1.7621 1.4554 2.0399 33 1 0.9399 4.5583 2.1898 34 1 -0.6474 4.6789 1.2588 35 1 -2.3184 4.1229 1.0588 36 1 -4.7492 3.7328 1.0199 37 1 -4.2933 0.6163 3.8985 38 1 -1.8615 1.0006 3.9280 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:15 Heat of formation + Delta-G solvation = 36.592378 kcal Electronic energy + Delta-G solvation = -19162.874980 eV Core-core repulsion = 16224.407995 eV Total energy + Delta-G solvation = -2938.466985 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -39.86746 -37.83021 -36.58130 -35.09208 -32.14683 -31.25709 -30.85752 -29.46361 -26.94324 -23.91570 -22.94508 -22.70869 -20.77986 -20.47858 -19.75676 -17.45179 -16.99482 -15.94061 -15.41011 -15.02432 -14.65625 -14.21987 -13.82687 -13.71907 -13.66866 -13.58627 -12.84012 -12.51855 -12.14318 -11.94241 -11.82200 -11.77017 -11.46642 -11.27430 -10.95820 -10.93935 -10.86058 -10.61707 -10.39998 -10.21023 -9.85779 -9.74546 -9.20694 -9.13022 -8.61628 -8.47637 -7.34956 -6.08242 -4.05916 0.97341 1.13257 1.95543 3.27302 3.34984 3.35712 3.39136 4.20167 4.39988 4.50215 4.62890 4.70783 4.90343 5.05294 5.17452 5.19063 5.25067 5.41269 5.56397 5.71316 5.73713 5.78772 5.83839 5.95139 5.99984 6.02407 6.11950 6.17237 6.37619 6.44021 6.49364 6.50533 6.64891 6.75496 6.83729 7.12119 7.66788 7.91477 8.27394 8.62197 8.99562 9.54349 11.05244 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029145 B = 0.003775 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.479407 B = 7415.129727 C = 7574.633394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.148 4.148 3 C 0.188 3.812 4 H 0.039 0.961 5 C -0.494 4.494 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.640 5.640 14 C 0.049 3.951 15 H 0.098 0.902 16 C -0.168 4.168 17 C -0.149 4.149 18 H 0.115 0.885 19 C -0.030 4.030 20 C -0.112 4.112 21 C -0.106 4.106 22 C -0.046 4.046 23 Cl -0.080 7.080 24 C -0.107 4.107 25 C -0.105 4.105 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.264 0.736 32 H 0.332 0.668 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.899 1.574 8.052 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.188 4.188 3 C 0.080 3.920 4 H 0.057 0.943 5 C -0.532 4.532 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.270 5.270 14 C -0.062 4.062 15 H 0.116 0.884 16 C -0.206 4.206 17 C -0.169 4.169 18 H 0.133 0.867 19 C -0.031 4.031 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.073 4.073 23 Cl -0.052 7.052 24 C -0.126 4.126 25 C -0.123 4.123 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.556 2.138 7.738 21.140 hybrid contribution -1.216 -0.665 -0.829 1.615 sum -20.772 1.473 6.910 21.941 Atomic orbital electron populations 1.22095 0.98489 1.00288 1.00923 1.22501 0.92776 1.01813 1.01740 1.19746 0.96733 0.88239 0.87328 0.94286 1.20832 0.88746 1.48910 0.94748 0.90566 1.24963 0.94766 0.94739 0.98549 1.69886 1.09758 1.50167 1.23916 0.86927 0.81031 0.79165 0.82761 1.20083 1.21529 1.19192 1.60753 1.17832 1.41150 1.07217 1.22844 0.91240 0.98322 0.93839 0.88447 1.23352 1.02423 0.91422 1.03382 1.21559 0.90395 1.06387 0.98509 0.86721 1.19395 0.94241 0.94444 0.94975 1.21100 0.92419 0.99999 0.99501 1.21015 0.95378 0.97287 0.98788 1.20885 0.84505 1.00245 1.01637 1.98358 1.12840 1.96017 1.97939 1.21009 0.93341 0.99418 0.98802 1.20957 0.93961 0.97867 0.99551 0.92749 0.93782 0.94127 0.92191 0.92786 0.92622 0.84845 0.87782 0.89119 0.84822 0.85132 0.85123 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 8.60 37.16 0.32 -2.38 16 2 C -0.15 -2.97 5.38 -26.73 -0.14 -3.12 16 3 C 0.19 4.20 1.81 -68.86 -0.12 4.07 16 4 H 0.04 0.91 4.89 -51.93 -0.25 0.66 16 5 C -0.49 -13.48 9.19 -34.44 -0.32 -13.80 16 6 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 9 Si 0.87 21.21 26.99 -169.99 -4.59 16.63 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.17 6.82 56.52 0.39 -5.78 16 13 N -0.64 -12.32 6.44 -100.95 -0.65 -12.98 16 14 C 0.05 0.78 3.69 -67.71 -0.25 0.53 16 15 H 0.10 1.61 6.08 -51.93 -0.32 1.30 16 16 C -0.17 -2.30 9.79 -26.69 -0.26 -2.57 16 17 C -0.15 -1.91 5.84 -91.73 -0.54 -2.45 16 18 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 19 C -0.03 -0.36 5.61 -104.62 -0.59 -0.94 16 20 C -0.11 -1.26 9.30 -39.59 -0.37 -1.63 16 21 C -0.11 -1.13 9.83 -39.55 -0.39 -1.51 16 22 C -0.05 -0.50 6.32 -39.50 -0.25 -0.75 16 23 Cl -0.08 -0.80 28.96 -51.86 -1.50 -2.30 16 24 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 25 C -0.11 -1.14 9.74 -39.59 -0.39 -1.52 16 26 H 0.05 0.85 5.75 -51.93 -0.30 0.55 16 27 H 0.04 0.75 7.96 -51.93 -0.41 0.33 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.05 1.05 8.02 -51.93 -0.42 0.63 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.33 5.96 8.35 -39.29 -0.33 5.63 16 33 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.09 1.09 6.17 -51.93 -0.32 0.77 16 35 H 0.13 1.38 6.02 -52.49 -0.32 1.06 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -29.02 324.13 -10.06 -39.08 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.20 Total: 6.67 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -3.78 Total: -25.63 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.12 Total: -39.32 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.59 Total: 16.63 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.02 -10.06 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.669 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds